Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold538
Parameters: 2 7 7 80 10 50 1000
Length:  178739

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5051--5078
14
2.0
14
100
0
56
14
14
0
71
1.15
5075--5125
6
9.2
6
83
12
56
31
3
13
50
1.60
5075--5125
11
4.6
12
72
18
56
31
3
13
50
1.60
5067--5122
27
2.1
27
100
0
112
28
7
10
53
1.62
8256--8305
20
2.4
22
87
9
70
56
16
6
22
1.62
10351--10432
30
2.8
30
80
7
87
21
19
7
51
1.71
13781--13830
20
2.4
22
87
9
70
56
16
6
22
1.62
15707--15784
29
2.6
29
80
6
84
23
17
6
52
1.67
17728--17763
18
2.0
18
94
0
63
47
5
11
36
1.63
31254--31329
26
2.9
26
86
9
109
38
11
23
26
1.89
31256--31346
27
3.4
27
85
8
107
34
14
25
26
1.94
33061--33188
35
3.6
35
84
5
143
14
11
32
41
1.82
35425--35464
21
1.9
21
89
0
62
55
0
7
37
1.29
35510--35619
54
2.0
54
89
0
166
40
7
23
28
1.81
36290--36318
14
2.0
15
93
6
51
34
0
27
37
1.57
37295--37335
11
3.7
11
96
0
73
19
9
21
48
1.77
37365--37404
14
2.9
15
82
14
50
42
0
22
35
1.54
43217--43282
25
2.6
25
82
0
78
33
16
19
30
1.94
43208--43290
25
3.3
25
77
3
69
32
20
18
28
1.96
55727--55893
45
3.7
45
81
4
194
19
18
16
44
1.86
88674--88728
22
2.5
22
78
0
65
27
30
5
36
1.79
93641--93678
20
1.9
20
84
10
51
13
2
23
60
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95772--95816
20
2.3
19
84
7
54
24
33
11
31
1.90
97106--97168
21
3.0
21
88
2
90
30
3
33
33
1.74
104383--104443
10
6.1
10
74
12
54
32
11
24
31
1.91
104384--104444
20
3.0
20
81
9
70
32
11
26
29
1.91
104388--104464
30
2.5
30
81
6
84
29
14
29
25
1.95
117765--117834
20
3.5
20
78
3
79
24
22
18
34
1.96
117749--117843
20
4.8
20
74
0
73
25
22
15
36
1.93
117749--117844
40
2.4
40
80
3
113
25
21
15
37
1.93
119322--119422
51
2.0
51
100
0
202
42
9
9
37
1.72

Tables:   1

The End!