Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2330

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 591

Length: 985
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36


Found at i:277 original size:9 final size:9

Alignment explanation


    Indices: 263--299  Score: 65
    Period size: 9  Copynumber: 4.1  Consensus size: 9

        253 TATAGTTTGA

                     
        263 TATTCGAAT
          1 TATTCGAAT

                     
        272 TATTCGAAT
          1 TATTCGAAT

                   * 
        281 TATTCGAGT
          1 TATTCGAAT

                     
        290 TATTCGAAT
          1 TATTCGAAT

             
        299 T
          1 T

        300 CGAAAACTCA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46


Consensus pattern (9 bp):   
TATTCGAAT

Done.