Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2640

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 534

Length: 890
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42


Found at i:449 original size:109 final size:107

Alignment explanation


    Indices: 258--487  Score: 370
    Period size: 109  Copynumber: 2.1  Consensus size: 107

        248 TACGCATACT

                                                  *                   *      
        258 AATATCCTTTTAAAAATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAGCGTGCC
          1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCAAGAAAACGTGCC

                                 *    *                 
        323 CTAATGTGCTAGGTTTCGATTTTTCTTGTTCGACCAAATAGCCA
         66 CTAATGTGCTAGGTTTCGA--CTTCTCGTTCGACCAAATAGCCA

                                         *                      *            
        367 AATATCCTTTTAAAAATTTCAAAATAAGGTAATATTTTACGTTTGGAAATTCGAGAAAACGTGCC
          1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCAAGAAAACGTGCC

                      *                               
        432 CTAATGTGCTGGGTTTCGACTTCTCGTTCGACCAAATAGCCA
         66 CTAATGTGCTAGGTTTCGACTTCTCGTTCGACCAAATAGCCA

                    *     
        474 AATATCCTCTTAAA
          1 AATATCCTTTTAAA

        488 TCTTAATCCA


Statistics
Matches: 113,  Mismatches: 8, Indels: 2
        0.92            0.07        0.02

Matches are distributed among these distances:
 107   34  0.30
 109   79  0.70

ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Consensus pattern (107 bp):   
AATATCCTTTTAAAAATTTCAAAATAAGGCAATATTTTACGTTTGGAAATTCAAGAAAACGTGCC
CTAATGTGCTAGGTTTCGACTTCTCGTTCGACCAAATAGCCA

Done.