genome.fa.s3360.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold76
Parameters: 2 7 7 80 10 50 1000
Length:  1973630

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 564 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414992--415188	41	4.8	40	84	5	241	31	28	19	20	1.97
421068--421205	50	2.7	50	83	5	172	28	25	17	28	1.97
424028--424162	49	2.8	49	75	2	146	25	28	16	28	1.97
424539--424563	2	12.5	2	100	0	50	52	0	0	48	1.00
425097--425138	20	2.2	20	86	4	59	40	4	16	38	1.70
425184--425297	20	5.7	20	71	10	72	38	7	11	42	1.70
425884--425934	16	3.1	16	77	5	57	43	0	1	54	1.11
436623--436647	1	25.0	1	100	0	50	0	100	0	0	0.00
444116--444145	12	2.4	13	94	5	53	33	13	0	53	1.40
445279--445376	40	2.5	40	96	0	178	23	29	24	22	1.99
447677--447715	20	2.0	20	90	5	62	35	12	12	38	1.82
447814--447852	20	2.0	20	94	0	69	48	2	0	48	1.15
448931--448991	32	1.9	32	93	0	104	52	18	3	26	1.60
448931--449004	32	2.5	30	85	10	91	52	18	2	25	1.59
448964--449018	27	2.0	27	86	6	76	50	18	3	27	1.63
462354--462417	6	10.8	6	78	9	51	76	3	7	12	1.11
462391--462426	16	2.3	15	90	9	54	83	5	2	8	0.89
469235--469505	97	2.6	103	89	6	401	31	15	21	31	1.94
471362--471883	265	2.0	257	93	3	882	26	17	22	33	1.96
480154--480194	21	2.0	21	85	9	57	58	2	0	39	1.11
482147--482231	33	2.5	33	79	7	91	15	8	37	38	1.77
485264--485298	11	3.2	11	87	0	52	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485506--485548	22	2.0	22	81	9	52	58	9	11	20	1.61
490727--490802	36	2.1	36	97	0	143	28	14	15	40	1.87
490734--490817	36	2.3	35	86	8	98	30	14	15	39	1.87
496612--496726	60	1.9	60	100	0	230	20	15	23	40	1.90
496626--496733	32	3.5	32	64	14	91	21	13	22	42	1.88
496763--496814	22	2.4	22	93	0	86	40	3	3	51	1.38
504248--504279	15	2.1	15	94	0	55	68	9	6	15	1.36
508476--508719	27	9.1	27	78	3	190	35	15	22	26	1.94
508479--508719	54	4.5	55	76	4	224	34	15	22	26	1.95
524652--525178	109	4.8	109	88	1	691	30	17	19	33	1.94
526351--526401	7	7.4	7	75	4	50	13	1	33	50	1.53
526526--526603	7	11.0	7	70	8	50	16	0	38	44	1.48
531971--532060	21	4.3	21	86	0	99	35	17	42	4	1.70
532045--532072	12	2.3	12	100	0	56	39	17	42	0	1.50
532447--532721	42	6.4	41	74	14	207	25	19	23	32	1.98
534836--535058	26	8.6	26	80	2	216	19	15	28	36	1.92
541255--541452	70	3.0	63	79	12	218	34	16	6	42	1.74
541255--541482	70	3.4	66	78	11	205	34	16	5	43	1.71
541568--541789	94	2.4	93	77	9	236	35	17	8	39	1.79
542328--542358	9	3.4	9	90	0	53	25	12	22	38	1.90
542412--542448	9	4.1	9	92	0	65	45	13	10	29	1.77
543248--543273	5	5.2	5	100	0	52	19	19	19	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547030--547064	18	1.9	18	94	0	61	28	31	14	25	1.95
558654--558703	24	2.1	24	96	0	91	28	12	28	32	1.92
560662--560834	43	4.0	43	90	1	258	30	26	19	24	1.98
561005--561067	21	3.2	21	69	17	62	52	6	1	39	1.37
562514--562609	42	2.3	43	81	1	113	27	17	25	30	1.97
563215--563240	2	13.0	2	100	0	52	50	0	0	50	1.00
563420--563585	44	3.8	44	91	0	253	27	10	19	42	1.85
563417--563589	22	7.9	22	81	3	197	27	10	19	42	1.84
565638--565678	3	13.7	3	94	0	73	29	0	2	68	1.03
566356--566397	21	2.0	21	90	0	66	21	2	50	26	1.61
566356--566405	22	2.3	21	86	3	64	20	2	50	28	1.59
567307--567460	7	21.6	7	69	15	66	46	34	0	18	1.55
567263--567368	50	2.1	50	82	3	124	43	36	0	18	1.57
567349--567465	14	8.2	14	77	14	87	49	29	0	20	1.55
567882--567987	40	2.6	41	86	4	144	30	24	17	27	1.98
567809--568102	154	1.9	155	81	4	362	30	21	19	29	1.97
568032--568122	40	2.3	39	81	3	101	24	19	24	31	1.98
577370--577429	30	2.0	30	100	0	120	36	10	16	36	1.82
583967--584085	37	3.2	37	73	11	109	36	31	14	16	1.89
593526--593566	20	2.0	21	86	13	59	31	7	12	48	1.68
593542--593593	27	1.9	27	84	0	68	32	3	11	51	1.56
604731--604779	25	2.0	25	83	0	62	36	14	16	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613209--613253	23	1.9	24	90	4	74	44	2	0	53	1.13
615721--615750	14	2.2	13	94	5	51	60	0	0	40	0.97
620568--620599	5	6.4	5	100	0	64	78	0	0	21	0.76
621383--621616	121	1.9	121	100	0	468	39	9	12	38	1.77
624815--624961	43	3.4	43	75	10	149	30	14	22	32	1.93
626821--626854	14	2.4	14	100	0	68	26	8	20	44	1.81
632755--632789	10	3.5	10	88	0	52	48	22	2	25	1.64
635052--635184	27	5.0	27	79	9	103	36	18	22	22	1.95
635119--635319	27	7.4	27	88	0	276	34	18	23	23	1.96
635119--635319	81	2.5	81	90	0	312	34	18	23	23	1.96
635336--635444	24	4.6	24	79	3	96	28	7	21	43	1.79
635508--635578	27	2.7	27	83	12	85	19	25	22	32	1.98
635593--635779	32	5.8	32	84	0	221	22	20	19	37	1.94
635593--635778	64	2.9	64	88	1	266	22	20	19	37	1.94
635593--635792	96	2.1	95	83	2	249	22	20	19	38	1.94
635784--635857	22	3.3	21	77	5	67	17	20	18	43	1.88
637187--637324	50	2.8	50	75	7	145	21	28	21	28	1.98
644468--644524	27	2.1	27	100	0	114	36	28	15	19	1.92
645370--645465	49	1.9	50	93	2	167	34	13	29	22	1.93
645643--645677	10	3.5	10	92	0	61	51	22	0	25	1.48
646081--646129	21	2.4	21	80	10	57	36	26	0	36	1.57
649490--649589	50	2.0	50	94	0	173	36	5	13	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670997--671203	41	5.0	41	82	2	245	34	17	28	19	1.95
671102--671166	21	3.2	20	70	12	60	33	20	26	20	1.96
673365--673433	25	2.8	25	81	14	81	31	23	17	27	1.97
674787--674835	19	2.5	20	77	12	57	53	22	6	18	1.66
676440--676708	137	2.0	136	81	2	315	34	23	20	22	1.97
676847--676914	30	2.3	30	100	0	136	41	19	5	33	1.75
678419--678485	26	2.6	26	90	0	107	25	26	26	20	1.99
678916--679440	260	2.0	260	94	0	924	33	7	21	37	1.81
685118--685306	51	3.7	50	80	3	209	31	25	15	26	1.96
692785--692962	51	3.5	51	79	5	173	30	28	16	24	1.96
694551--694604	28	2.0	27	85	7	74	40	18	3	37	1.69
702023--702047	8	3.1	8	100	0	50	84	0	0	16	0.63
705468--705501	16	2.1	16	88	0	50	11	32	0	55	1.36
709469--709506	15	2.5	15	91	4	58	65	2	0	31	1.06
710219--710489	133	2.0	135	98	1	528	37	17	14	30	1.90
714803--714883	27	3.0	26	84	12	94	45	9	19	24	1.81
725957--725981	9	2.8	9	100	0	50	20	0	0	80	0.72
728239--728271	17	1.9	17	93	0	57	18	15	12	54	1.71
730000--730032	13	2.6	13	85	4	50	18	6	9	66	1.40
757501--757530	15	2.0	15	93	0	51	56	6	3	33	1.42
758715--758800	42	2.0	43	90	2	138	23	25	2	48	1.62
767074--767119	19	2.4	19	92	0	74	28	30	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774287--774314	14	2.0	14	100	0	56	14	14	28	42	1.84
777036--777092	21	2.8	20	71	12	53	17	29	17	35	1.93
777009--777156	41	3.6	41	85	0	206	22	29	14	33	1.94
780962--781048	4	21.8	4	97	0	165	51	0	22	25	1.48
781609--781652	16	2.8	15	86	10	61	34	22	15	27	1.95
784796--784836	21	2.0	21	85	9	57	36	17	7	39	1.77
786666--786698	6	5.7	6	89	3	50	12	21	15	51	1.75
798202--798325	66	1.9	66	86	6	180	27	17	21	33	1.96
817629--817688	18	3.3	18	81	6	68	31	0	1	66	1.01
822391--822435	20	2.3	20	84	3	56	28	6	6	57	1.50

Tables:   1   2   3   4   5