Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1461

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1709
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27


Found at i:678 original size:7 final size:6

Alignment explanation


    Indices: 658--696  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        648 TTAGCCATCG

                              *              *    *      
        658 AAATAA AAATAA AAATGA AAATAA AAATAC AAACAA AAA
          1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA

        697 ATTGACAAAA


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13


Consensus pattern (6 bp):   
AAATAA

Done.