Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold817

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5888
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:142 original size:16 final size:16

Alignment explanation


    Indices: 117--154  Score: 58
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        107 TTGATTTGCT

                 *          
        117 ATTACGCCTCTATTCC
          1 ATTACACCTCTATTCC

                            
        133 ATTACACCTCTATTCC
          1 ATTACACCTCTATTCC

             *    
        149 AATACA
          1 ATTACA

        155 GCGAACCAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34


Consensus pattern (16 bp):   
ATTACACCTCTATTCC
Done.