Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2858

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 834
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32


Found at i:539 original size:30 final size:30

Alignment explanation


    Indices: 500--556  Score: 96
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        490 GATCCACACG

                                          
        500 TCGAACCGACCCGGACCCAAGATCCGCGCA
          1 TCGAACCGACCCGGACCCAAGATCCGCGCA

                *              *       
        530 TCGACCCGACCCGGACCCAGGATCCGC
          1 TCGAACCGACCCGGACCCAAGATCCGC

        557 ATCCTTTTCA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   25  1.00

ACGTcount: A:0.23, C:0.46, G:0.25, T:0.07


Consensus pattern (30 bp):   
TCGAACCGACCCGGACCCAAGATCCGCGCA
Done.