Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1600

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 899

Length: 1499
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Found at i:266 original size:14 final size:14

Alignment explanation


    Indices: 246--283  Score: 58
    Period size: 14  Copynumber: 2.7  Consensus size: 14

        236 GTTTTCAGGA

                          
        246 CTGAATTGCTTCCT
          1 CTGAATTGCTTCCT

            *             
        260 TTGAATTGCTTCCT
          1 CTGAATTGCTTCCT

                *     
        274 CTGAGTTGCT
          1 CTGAATTGCT

        284 CCGAAAAGTG


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  14   21  1.00

ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45


Consensus pattern (14 bp):   
CTGAATTGCTTCCT
Done.