Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1307

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2077
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.26

Warning! 65 characters in sequence are not A, C, G, or T


Found at i:1167 original size:44 final size:44

Alignment explanation


    Indices: 1036--1159  Score: 194
    Period size: 44  Copynumber: 2.8  Consensus size: 44

       1026 NNNNNNNNNN

                                                     * *
       1036 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTA
          1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTG

                                                        
       1080 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTG
          1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTG

                          *    * *   *          
       1124 GCGTGAAGTAGATCAAAGATACCAGGTCTTGTCTTC
          1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTC

       1160 CCATACTGAT


Statistics
Matches: 74,  Mismatches: 6, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  44   74  1.00

ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28


Consensus pattern (44 bp):   
GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTG
Done.