Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold254
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 856998
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 28123 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:604445 original size:314 final size:313
Alignment explanation
Indices: 603848--604703 Score: 911
Period size: 314 Copynumber: 2.6 Consensus size: 313
603838 TAAAAGAAGT
* *
603848 AAAATAAGCATTTATAA-AGTACGATGAAATATAAACTTTAAGTATCGTTAAAAGATATATAATT
1 AAAATAAGCATTGATAATA-TACAATGAAATATAAACTTTAAGTATCGTTAAAAG-------A-T
* *
603912 CATTATAATTCAAAAATCATTATACTTATTAAAATAAAAACAAAAGTAAGCATCTATAATAAAAT
57 -A-TATAATTCGAAAATCATTCTACTTATT-AAA-AAAAACAAAA-TAAG---CTATAATAAAAT
* * *
603977 AGAGGTTTAGGTATAGTGAAAGGTGGATGATTCCGATAACGAAAGCAAAATTAA-CATTTATAGT
114 AGAGGTTTAGGTATAGTGAAAGGTGTATGATTCCGATAACCAAAG-AAAAATAAGCATTTATA-T
**
604041 ACACAATGAAATATAAACTTTAAGTATCGTTAAAAAATATATAATTCGAAAACCGTCTTACTTAT
177 A-AC-AT-CCATA-AAA---T-A-TATCGTTAAAAAATATATAATTCGAAAACCGTCTTACTTAT
* ** * * *
604106 TAAAACAGAAACAAAATAAGCATTTATAATGAAATAGAGGTTTAGGTATAGCGGAAGGTGTATGA
233 TAAAACAAAAACAAAATAAGCATTTATAACAAAATAGAGGTATAGATATAGCGAAAGGTGTATGA
*
604171 TTCCTATAACCAAAGC
298 TTCCGATAACCAAAGC
* * *
604187 AAAATAAGTATTGAT-ATA-ACACTCGTAAAATATAAACTTTAAGTATCGTTAAAAGATATCTAA
1 AAAATAAGCATTGATAATATACAAT-G--AAATATAAACTTTAAGTATCGTTAAAAGATATATAA
*
604250 TTTGAAAA-CAATT-TACTTATTGAAACAAAAACAAAATAAGC-ATAATAAAATAGAGGTTTAGG
63 TTCGAAAATC-ATTCTACTTATT-AAA-AAAAACAAAATAAGCTATAATAAAATAGAGGTTTAGG
*
604312 TATAGTGAAAGGTGTATGATTCCGATAACCAAAGAAAAATAAGCATTTATATAACATCCATGAAA
125 TATAGTGAAAGGTGTATGATTCCGATAACCAAAGAAAAATAAGCATTTATATAACATCCATAAAA
* * *
604377 TATATCGTTAAAAGATATATAATTCGAAAACCGAT-TTACTTATTAAAACAAAAACAAATTATGC
190 TATATCGTTAAAAAATATATAATTCGAAAACCG-TCTTACTTATTAAAACAAAAACAAAATAAGC
* *
604441 ATTTATAACAAAATAGAGGTATAGATATGGTGAAAGGTGTATGATTCCGATAACCAAAGC
254 ATTTATAACAAAATAGAGGTATAGATATAGCGAAAGGTGTATGATTCCGATAACCAAAGC
* * *
604501 AAAATAAGCATTTATAATATATAATGAAATATAAATTTTAAGTATCGTTAAAAGATATATAATTC
1 AAAATAAGCATTGATAATATACAATGAAATATAAACTTTAAGTATCGTTAAAAGATATATAATTC
* * * *
604566 GAAAATCGTTCTACTTATTAAAAAAAATAAAGTACGCATTTATAATAAAATAGAGGTATAGGTAT
66 GAAAATCATTCTACTTATTAAAAAAAACAAAATAAGC---TATAATAAAATAGAGGT-T---TA-
* * *
604631 GGTGAAAGGTGAAAGGTGTATGATTCCGATAACCAAAGCAAAACAAGCATTTATATAACA-CTCA
123 GGT-ATA-GTGAAAGGTGTATGATTCCGATAACCAAAGAAAAATAAGCATTTATATAACATC-CA
604695 TAAAATATA
185 TAAAATATA
604704 AACTTTAAGC
Statistics
Matches: 452, Mismatches: 42, Indels: 62
0.81 0.08 0.11
Matches are distributed among these distances:
312 12 0.03
313 46 0.10
314 130 0.29
315 6 0.01
316 20 0.04
317 1 0.00
319 3 0.01
320 4 0.01
321 5 0.01
322 5 0.01
323 69 0.15
324 61 0.13
325 1 0.00
328 4 0.01
329 22 0.05
330 13 0.03
331 1 0.00
332 1 0.00
333 1 0.00
337 3 0.01
338 2 0.00
339 14 0.03
340 28 0.06
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.29
Consensus pattern (313 bp):
AAAATAAGCATTGATAATATACAATGAAATATAAACTTTAAGTATCGTTAAAAGATATATAATTC
GAAAATCATTCTACTTATTAAAAAAAACAAAATAAGCTATAATAAAATAGAGGTTTAGGTATAGT
GAAAGGTGTATGATTCCGATAACCAAAGAAAAATAAGCATTTATATAACATCCATAAAATATATC
GTTAAAAAATATATAATTCGAAAACCGTCTTACTTATTAAAACAAAAACAAAATAAGCATTTATA
ACAAAATAGAGGTATAGATATAGCGAAAGGTGTATGATTCCGATAACCAAAGC
Found at i:604494 original size:154 final size:152
Alignment explanation
Indices: 604230--604703 Score: 521
Period size: 154 Copynumber: 3.0 Consensus size: 152
604220 AAACTTTAAG
* * *
604230 TATCGTTAAAAGATATCTAATTTGAAAACAATTTACTTATTGAAACAAAAACAAAATAAGC----
1 TATCGTTAAAAGATATATAATTCGAAAACGATTTACTTATT-AAACAAAAACAAAATAAGCATTT
* * * *
604291 ATAATAAAATAGAGGTTTAGGTATAGTGAAAGGTGTATGATTCCGATAACCAAAGAAAAATAAGC
65 ATAATAAAATAGAGGTATAGATATGGTGAAAGGTGTATGATTCCGATAACCAAAGCAAAATAAGC
*
604356 ATTTATATAACATCCATGAAATA
130 ATTTATATAACATCCATAAAATA
* *
604379 TATCGTTAAAAGATATATAATTCGAAAACCGATTTACTTATTAAAACAAAAACAAATTATGCATT
1 TATCGTTAAAAGATATATAATTCGAAAA-CGATTTACTTATT-AAACAAAAACAAAATAAGCATT
*
604444 TATAACAAAATAGAGGTATAGATATGGTGAAAGGTGTATGATTCCGATAACCAAAGCAAAATAAG
64 TATAATAAAATAGAGGTATAGATATGGTGAAAGGTGTATGATTCCGATAACCAAAGCAAAATAAG
* **
604509 CATTTATAATATATAATGAAATATAAATTTTAA
129 CATTTAT-ATA-A-CAT-CCATA-AAA---T-A
* * *
604542 GTATCGTTAAAAGATATATAATTCGAAAATCG-TTCTACTTATTAAA-AAAAATAAAGTACGCAT
1 -TATCGTTAAAAGATATATAATTCGAAAA-CGATT-TACTTATTAAACAAAAACAAAATAAGCAT
*
604605 TTATAATAAAATAGAGGTATAGGTATGGTGAAAGGTGAAAGGTGTATGATTCCGATAACCAAAGC
63 TTATAATAAAATAGAGGTATA-G-A---T--ATGGTGAAAGGTGTATGATTCCGATAACCAAAGC
*
604670 AAAACAAGCATTTATATAACA-CTCATAAAATA
121 AAAATAAGCATTTATATAACATC-CATAAAATA
604702 TA
1 TA
604704 AACTTTAAGC
Statistics
Matches: 276, Mismatches: 25, Indels: 38
0.81 0.07 0.11
Matches are distributed among these distances:
149 26 0.09
150 29 0.11
154 66 0.24
155 3 0.01
156 1 0.00
157 2 0.01
158 2 0.01
159 5 0.02
160 1 0.00
161 1 0.00
162 35 0.13
163 7 0.03
164 42 0.15
165 3 0.01
166 1 0.00
167 2 0.01
168 3 0.01
169 47 0.17
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (152 bp):
TATCGTTAAAAGATATATAATTCGAAAACGATTTACTTATTAAACAAAAACAAAATAAGCATTTA
TAATAAAATAGAGGTATAGATATGGTGAAAGGTGTATGATTCCGATAACCAAAGCAAAATAAGCA
TTTATATAACATCCATAAAATA
Found at i:604850 original size:65 final size:66
Alignment explanation
Indices: 604769--604904 Score: 256
Period size: 66 Copynumber: 2.1 Consensus size: 66
604759 GCAGATTTAA
*
604769 GTATAGTGAAAGGTGTATAATT-CCGATAATCAAAGTAAAATAAGTATTTATGTAACACCCACAA
1 GTATAGTGAAAGGTGTATAATTCCCGATAATCAAAGTAAAATAAGTATTCATGTAACACCCACAA
604833 C
66 C
604834 GTATAGTGAAAGGTGTATAATTCCCGATAATCAAAGTAAAATAAGTATTCATGTAACACCCACAA
1 GTATAGTGAAAGGTGTATAATTCCCGATAATCAAAGTAAAATAAGTATTCATGTAACACCCACAA
604899 C
66 C
604900 GTATA
1 GTATA
604905 AACCTTAAGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
65 22 0.32
66 47 0.68
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (66 bp):
GTATAGTGAAAGGTGTATAATTCCCGATAATCAAAGTAAAATAAGTATTCATGTAACACCCACAA
C
Found at i:605027 original size:29 final size:29
Alignment explanation
Indices: 604985--605043 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
604975 CTAACCAGAA
604985 AGTAAAAGAGGTAGTGAAATTAAATGCTT
1 AGTAAAAGAGGTAGTGAAATTAAATGCTT
605014 AGTAAAAGAGGTAGTGAAATTAAATGCTT
1 AGTAAAAGAGGTAGTGAAATTAAATGCTT
605043 A
1 A
605044 CCAAGAGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.03, G:0.24, T:0.27
Consensus pattern (29 bp):
AGTAAAAGAGGTAGTGAAATTAAATGCTT
Found at i:606964 original size:2 final size:2
Alignment explanation
Indices: 606957--606981 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
606947 GATGATCTAA
606957 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
606982 AATTACCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:611716 original size:41 final size:40
Alignment explanation
Indices: 611614--611771 Score: 190
Period size: 40 Copynumber: 3.9 Consensus size: 40
611604 CGTTTGTGGA
* * *
611614 AAAAAACGCTGCTATTGCTTTACCTTTAACGGCGTTTATG
1 AAAAAATGCCGCTATTGCTTTACCTTTTACGGCGTTTATG
* * *
611654 AAAAAATGCCGTTGTTGCTTTACCTTTTGCGGCGTTTATG
1 AAAAAATGCCGCTATTGCTTTACCTTTTACGGCGTTTATG
* * *
611694 AGAAAAATGCCACTATTACTTTACCTTTTACGGCGTTTACG
1 A-AAAAATGCCGCTATTGCTTTACCTTTTACGGCGTTTATG
* * * *
611735 CAAAAACGCTGCTAATGCTTTACCTTTTACGGCGTTT
1 AAAAAATGCCGCTATTGCTTTACCTTTTACGGCGTTT
611772 TCTATCCAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 66 0.67
41 33 0.33
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (40 bp):
AAAAAATGCCGCTATTGCTTTACCTTTTACGGCGTTTATG
Found at i:611718 original size:81 final size:82
Alignment explanation
Indices: 611597--611771 Score: 208
Period size: 81 Copynumber: 2.1 Consensus size: 82
611587 TAAAAAAATA
* ** * * *
611597 TTTGCGGCGTTTGTGGAAAAAAACGCTGCTATTGCTTTACCTTTAACGGCGTTTATGAAAAAATG
1 TTTGCGGCGTTTATGGAAAAAAACGCCACTATTACTTTACCTTTAACGGCGTTTACGAAAAAACG
* **
611662 CCGTTGTTGCTTTACCT
66 CCGCTAATGCTTTACCT
* * * *
611679 TTTGCGGCGTTTAT-GAGAAAAATGCCACTATTACTTTACCTTTTACGGCGTTTACGCAAAAACG
1 TTTGCGGCGTTTATGGAAAAAAACGCCACTATTACTTTACCTTTAACGGCGTTTACGAAAAAACG
*
611743 CTGCTAATGCTTTACCT
66 CCGCTAATGCTTTACCT
*
611760 TTTACGGCGTTT
1 TTTGCGGCGTTT
611772 TCTATCCAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
81 65 0.83
82 13 0.17
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (82 bp):
TTTGCGGCGTTTATGGAAAAAAACGCCACTATTACTTTACCTTTAACGGCGTTTACGAAAAAACG
CCGCTAATGCTTTACCT
Found at i:612682 original size:27 final size:26
Alignment explanation
Indices: 612643--612710 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
612633 TTTAATACTA
612643 TATTTTCTAAATAATTTTAATAATTTT
1 TATTTT-TAAATAATTTTAATAATTTT
* * *
612670 TATTTTTACAATATTTTTTATCATTTT
1 TATTTTTA-AATAATTTTAATAATTTT
*
612697 AATTTTTAAA-AATT
1 TATTTTTAAATAATT
612711 AATTAATTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.09
26 4 0.11
27 28 0.80
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
TATTTTTAAATAATTTTAATAATTTT
Found at i:617040 original size:25 final size:25
Alignment explanation
Indices: 616995--617042 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
616985 CTAATATTTT
*
616995 ATATTTGTAAAATTATGTTCCATTG
1 ATATTTGTAAAATAATGTTCCATTG
*
617020 ATATTTGATTAAATAAT-TTCCAT
1 ATATTTG-TAAAATAATGTTCCAT
617043 ATCATCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.48
Consensus pattern (25 bp):
ATATTTGTAAAATAATGTTCCATTG
Found at i:623690 original size:9 final size:10
Alignment explanation
Indices: 623664--623689 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
623654 TTCTTTATAT
623664 ATTTTTTAGA
1 ATTTTTTAGA
623674 ATTTTTTAGA
1 ATTTTTTAGA
623684 ATTTTT
1 ATTTTT
623690 AAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (10 bp):
ATTTTTTAGA
Found at i:623719 original size:18 final size:19
Alignment explanation
Indices: 623696--623732 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
623686 TTTTAAAAAA
623696 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
623714 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
623733 AAAATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:628307 original size:17 final size:16
Alignment explanation
Indices: 628273--628308 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
628263 GTTGTGGTGG
*
628273 AAACAATAAAAATTTC
1 AAACAATAAAAATATC
628289 AAACAATAAAAACTATC
1 AAACAATAAAAA-TATC
628306 AAA
1 AAA
628309 ACATATTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (16 bp):
AAACAATAAAAATATC
Found at i:633540 original size:40 final size:41
Alignment explanation
Indices: 633452--633546 Score: 111
Period size: 40 Copynumber: 2.3 Consensus size: 41
633442 CATTTTCCTT
* * * *
633452 TAAATTGCGTCCACGTCAGCGCGATGTCAGGGGACGTGTCAG
1 TAAATCGCGTCCACGTCAGCGCGA-GTCAGCGAACGTGGCAG
* * *
633494 CAAATCGCGTCCACGTCAGCGCG-GTTAGCTAACGTGGCAG
1 TAAATCGCGTCCACGTCAGCGCGAGTCAGCGAACGTGGCAG
633534 TAAATCGCGTCCA
1 TAAATCGCGTCCA
633547 TATCAGCATG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
40 24 0.53
42 21 0.47
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (41 bp):
TAAATCGCGTCCACGTCAGCGCGAGTCAGCGAACGTGGCAG
Found at i:633762 original size:11 final size:11
Alignment explanation
Indices: 633740--633808 Score: 102
Period size: 11 Copynumber: 6.2 Consensus size: 11
633730 AACTAATCCT
633740 CTCTCAAATTTC
1 CTCTC-AATTTC
633752 CTCTCAATTTC
1 CTCTCAATTTC
633763 CTCTCAATTTC
1 CTCTCAATTTC
*
633774 CTCTAAATTTC
1 CTCTCAATTTC
*
633785 CTCTCAATTTG
1 CTCTCAATTTC
*
633796 CTCTCAAATTC
1 CTCTCAATTTC
633807 CT
1 CT
633809 TCCAAATTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
11 47 0.90
12 5 0.10
ACGTcount: A:0.22, C:0.33, G:0.01, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:633783 original size:33 final size:33
Alignment explanation
Indices: 633740--633817 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 33
633730 AACTAATCCT
*
633740 CTCTCAAATTTCCTCTCAATTTCCTCTCAATTTC
1 CTCT-AAATTTCCTCTCAATTTCCTCTCAAATTC
*
633774 CTCTAAATTTCCTCTCAATTTGCTCTCAAATTC
1 CTCTAAATTTCCTCTCAATTTCCTCTCAAATTC
*
633807 CTTCCAAATTT
1 C-TCTAAATTT
633818 ATCTGAAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 28 0.70
34 12 0.30
ACGTcount: A:0.23, C:0.32, G:0.01, T:0.44
Consensus pattern (33 bp):
CTCTAAATTTCCTCTCAATTTCCTCTCAAATTC
Found at i:633885 original size:51 final size:51
Alignment explanation
Indices: 633786--633885 Score: 112
Period size: 51 Copynumber: 2.0 Consensus size: 51
633776 CTAAATTTCC
* * *
633786 TCTCAATTTGCTCTCAAATTCCTTCCAAATTTATCTGAAATCTATATTTAA
1 TCTCAATTTACTCTCAAATTCCTTCCAAATTCATCTGAAATCCATATTTAA
* * * * *
633837 TCTCAATTTACTCTCAAGTTCC-TCTTAAATTCCTCTTAAATCCCTATTT
1 TCTCAATTTACTCTCAAATTCCTTC-CAAATTCATCTGAAATCCATATTT
633886 TTAAATAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
50 2 0.05
51 38 0.95
ACGTcount: A:0.28, C:0.25, G:0.03, T:0.44
Consensus pattern (51 bp):
TCTCAATTTACTCTCAAATTCCTTCCAAATTCATCTGAAATCCATATTTAA
Found at i:636258 original size:15 final size:15
Alignment explanation
Indices: 636238--636275 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
636228 TTTAATTGAC
*
636238 AAACCTTAAACCCTT
1 AAACCTAAAACCCTT
636253 AAACCTAAAACCC-T
1 AAACCTAAAACCCTT
*
636267 AACCCTAAA
1 AAACCTAAA
636276 CCTTAACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.18
Consensus pattern (15 bp):
AAACCTAAAACCCTT
Found at i:636294 original size:27 final size:28
Alignment explanation
Indices: 636239--636299 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
636229 TTAATTGACA
*
636239 AACCTTAAACCCTTAAACCTAAAACCCT
1 AACCCTAAACCCTTAAACCTAAAACCCT
*
636267 AACCCTAAA-CCTT-AACTTAAAACTCCT
1 AACCCTAAACCCTTAAACCTAAAAC-CCT
*
636294 ACCCCT
1 AACCCT
636300 TAAATTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.31
27 12 0.41
28 8 0.28
ACGTcount: A:0.39, C:0.38, G:0.00, T:0.23
Consensus pattern (28 bp):
AACCCTAAACCCTTAAACCTAAAACCCT
Found at i:636321 original size:22 final size:22
Alignment explanation
Indices: 636267--636597 Score: 365
Period size: 22 Copynumber: 15.4 Consensus size: 22
636257 CTAAAACCCT
636267 AACCCTAAA-CCTTAACTT-AA
1 AACCCTAAACCCTTAACTTAAA
* *
636287 AACTCCT-ACCCCTTAAATTAAA
1 AAC-CCTAAACCCTTAACTTAAA
636309 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
* * * *
636331 AATCATAAACCCGTAACCTAAA
1 AACCCTAAACCCTTAACTTAAA
*
636353 AA-CCT-AACTCATTAACTTAAA
1 AACCCTAAAC-CCTTAACTTAAA
* * *
636374 AATCTTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAA
*
636396 AACTCTAAACCCTTAACTT-AA
1 AACCCTAAACCCTTAACTTAAA
636417 AACCCT-AACCCTTAACTT-AA
1 AACCCTAAACCCTTAACTTAAA
** * *
636437 AACTTTAAACCCTTAAATTTAA
1 AACCCTAAACCCTTAACTTAAA
* *
636459 AACCCTAAACCCTTAAATTTAA
1 AACCCTAAACCCTTAACTTAAA
** *
636481 AACAGT-AACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAA
*
636502 ACCCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
*
636524 AACCCTAAACCTTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
* *
636546 AACCTTAACCCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
636568 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
636590 AACCCTAA
1 AACCCTAA
636598 NNNNNNNNNN
Statistics
Matches: 260, Mismatches: 41, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
20 25 0.10
21 60 0.23
22 172 0.66
23 3 0.01
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.26
Consensus pattern (22 bp):
AACCCTAAACCCTTAACTTAAA
Found at i:636329 original size:43 final size:43
Alignment explanation
Indices: 636267--636597 Score: 343
Period size: 43 Copynumber: 7.7 Consensus size: 43
636257 CTAAAACCCT
* *
636267 AACCCTAAA-CCTTAACTTAAAACTCCT-ACCCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAC-CCTAAACCCTTAACTTAAA
* * * *
636309 AACCCTAAACCCTTAACTTAAAAATCATAAACCCGTAACCTAAA
1 AACCCTAAACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
* * * *
636353 AA-CCT-AACTCATTAACTTAAAAATCTTAAACCCTTAAATTAAA
1 AACCCTAAAC-CCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
*
636396 AACTCTAAACCCTTAACTTAAAACCCT-AACCCTTAACTT-AA
1 AACCCTAAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAA
** * * *
636437 AACTTTAAACCCTTAAATTTAAAACCCTAAACCCTTAAATTTAA
1 AACCCTAAACCCTT-AACTTAAAACCCTAAACCCTTAACTTAAA
** *
636481 AACAGT-AACCCTTAACCTAAAACCCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAA-CCCTAAACCCTTAACTTAAA
* * *
636524 AACCCTAAACCTTTAACTTAAAAACCTTAACCCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
636568 AACCCTAAACCCTTAACTTAAAAACCCTAA
1 AACCCTAAACCCTTAACTT-AAAACCCTAA
636598 NNNNNNNNNN
Statistics
Matches: 244, Mismatches: 33, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
41 15 0.06
42 42 0.17
43 91 0.37
44 89 0.36
45 7 0.03
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.26
Consensus pattern (43 bp):
AACCCTAAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAA
Found at i:636383 original size:65 final size:64
Alignment explanation
Indices: 636267--636597 Score: 396
Period size: 65 Copynumber: 5.1 Consensus size: 64
636257 CTAAAACCCT
* * *
636267 AACCCTAAA-CCTTAACTTAAAACTCCTACCCCTTAAATTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAA-ACCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * * * * *
636331 AATCATAAACCCGTAACCTAAAAACCTAACTCATTAACTTAAAAATCTTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCTAAC-CCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * ** * *
636396 AACTCTAAACCCTTAACTTAAAACCCTAACCCTTAACTT-AAAACTTTAAACCCTTAAATTTAA
1 AACCCTAAACCCTTAACTTAAAAACCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * *
636459 AACCCTAAACCCTTAAATTTAAAACAGTAACCCTTAACCTAAAACCCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAAC-CTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
636524 AACCCTAAACCTTTAACTTAAAAACCTTAACCCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
1 AACCCTAAACCCTTAACTTAAAAACC-TAA-CCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
636589 A
64 A
636590 AACCCTAA
1 AACCCTAA
636598 NNNNNNNNNN
Statistics
Matches: 223, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
63 42 0.19
64 32 0.14
65 108 0.48
66 41 0.18
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.26
Consensus pattern (64 bp):
AACCCTAAACCCTTAACTTAAAAACCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
Found at i:636450 original size:150 final size:151
Alignment explanation
Indices: 636267--636590 Score: 426
Period size: 150 Copynumber: 2.1 Consensus size: 151
636257 CTAAAACCCT
* * *
636267 AACCCTAAACCTTAACTTAAAACTCCTACCCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAA
1 AACCCTAACCCTTAACTTAAAACTCCTAACCCTTAAATTAAAAACCCTAAACCCTTAAATTAAAA
* *
636332 ATCA-TAAACCCGTAACCTAAAA-ACCT-AACTCATTAACTTAAAAATCTTAAACCCTTAAATTA
66 A-CAGT-AACCCGTAACCTAAAACACCTAAAC-CATTAACTTAAAAACCCTAAACCCTTAAATTA
636394 AAAA-CTCTAAACCCTTAACTT-AA
128 AAAACCT-TAAACCCTTAACTTAAA
* * *
636417 AACCCTAACCCTTAACTTAAAACT-TTAAACCCTTAAATTTAAAACCCTAAACCCTTAAATTTAA
1 AACCCTAACCCTTAACTTAAAACTCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAAATTAAA
* * * * *
636481 AACAGTAACCCTTAACCTAAAACCCCTAAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAA
65 AACAGTAACCCGTAACCTAAAACACCTAAACCATTAACTTAAAAACCCTAAACCCTTAAATTAAA
*
636546 AACCTTAACCCCTTAACTTAAA
130 AACCTTAAACCCTTAACTTAAA
636568 AACCCTAAACCCTTAACTTAAAA
1 AACCCT-AACCCTTAACTTAAAA
636591 ACCCTAANNN
Statistics
Matches: 153, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
149 18 0.12
150 106 0.69
151 13 0.08
152 16 0.10
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.26
Consensus pattern (151 bp):
AACCCTAACCCTTAACTTAAAACTCCTAACCCTTAAATTAAAAACCCTAAACCCTTAAATTAAAA
ACAGTAACCCGTAACCTAAAACACCTAAACCATTAACTTAAAAACCCTAAACCCTTAAATTAAAA
ACCTTAAACCCTTAACTTAAA
Found at i:638517 original size:19 final size:19
Alignment explanation
Indices: 638493--638531 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
638483 ATTCATCCTC
638493 TAATTCAATCTCTAAAATT
1 TAATTCAATCTCTAAAATT
638512 TAATTCAATCTCTAAAATT
1 TAATTCAATCTCTAAAATT
638531 T
1 T
638532 TTGGTGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATTCAATCTCTAAAATT
Found at i:639699 original size:21 final size:20
Alignment explanation
Indices: 639677--639837 Score: 178
Period size: 21 Copynumber: 7.7 Consensus size: 20
639667 ATTACATAAC
639677 CCCTTAACTTAAAACCCTAA
1 CCCTTAACTTAAAACCCTAA
639697 CCCTTAACTTAAAAACCCTAAA
1 CCCTTAACTT-AAAACCCT-AA
* *
639719 CCCTTAACTTTAAAATCGTAA
1 CCCTTAAC-TTAAAACCCTAA
* *
639740 CACTTAAATTAAGAACCCTAAA
1 CCCTTAACTTAA-AACCCT-AA
*
639762 CCCTTAACTTTAAAACCGTAA
1 CCCTTAAC-TTAAAACCCTAA
* *
639783 CCCTTAAATAAAAAACCCTAA
1 CCCTTAACT-TAAAACCCTAA
*
639804 CACTTAACTTAAAAACCCTAA
1 CCCTTAACTT-AAAACCCTAA
639825 CCCTTAACTTAAA
1 CCCTTAACTTAAA
639838 TATAATTTGG
Statistics
Matches: 117, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
20 18 0.15
21 64 0.55
22 29 0.25
23 6 0.05
ACGTcount: A:0.44, C:0.29, G:0.02, T:0.25
Consensus pattern (20 bp):
CCCTTAACTTAAAACCCTAA
Found at i:639732 original size:43 final size:43
Alignment explanation
Indices: 639677--639837 Score: 218
Period size: 43 Copynumber: 3.8 Consensus size: 43
639667 ATTACATAAC
*
639677 CCCTTAAC-TTAAAACCCTAACCCTTAACTTAAAAACCCTAAA
1 CCCTTAACTTTAAAACCCTAACCCTTAAATTAAAAACCCTAAA
* * * *
639719 CCCTTAACTTTAAAATCGTAACACTTAAATTAAGAACCCTAAA
1 CCCTTAACTTTAAAACCCTAACCCTTAAATTAAAAACCCTAAA
* *
639762 CCCTTAACTTTAAAACCGTAACCCTTAAATAAAAAACCCT-AA
1 CCCTTAACTTTAAAACCCTAACCCTTAAATTAAAAACCCTAAA
* * *
639804 CACTTAACTTAAAAACCCTAACCCTTAACTTAAA
1 CCCTTAACTTTAAAACCCTAACCCTTAAATTAAA
639838 TATAATTTGG
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
42 39 0.38
43 65 0.62
ACGTcount: A:0.44, C:0.29, G:0.02, T:0.25
Consensus pattern (43 bp):
CCCTTAACTTTAAAACCCTAACCCTTAAATTAAAAACCCTAAA
Found at i:639805 original size:64 final size:63
Alignment explanation
Indices: 639679--639837 Score: 212
Period size: 64 Copynumber: 2.5 Consensus size: 63
639669 TACATAACCC
* ** * *
639679 CTTAACTTAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTTAAAATCGTAACA
1 CTTAACTTAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAATAAAAAACCCTAACA
* * *
639742 CTTAAATTAAGAACCCTAAACCCTTAACTTTAAAACCGT-AACCCTTAAATAAAAAACCCTAACA
1 CTTAACTTAA-AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAATAAAAAACCCTAACA
639806 CTTAACTTAAAAACCCTAACCCTTAACTTAAA
1 CTTAACTT-AAAACCCTAACCCTTAACTTAAA
639838 TATAATTTGG
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
63 23 0.28
64 39 0.47
65 21 0.25
ACGTcount: A:0.45, C:0.28, G:0.02, T:0.26
Consensus pattern (63 bp):
CTTAACTTAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAATAAAAAACCCTAACA
Found at i:643159 original size:124 final size:124
Alignment explanation
Indices: 642994--643559 Score: 713
Period size: 124 Copynumber: 4.5 Consensus size: 124
642984 CCCAAACATG
* * * *
642994 CTACTGTAGCAAAAGTGTGTCCATGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * * * *
643059 TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAAGTCGAAATTATTTTTCCAGAAC
66 TTGAAGCGTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * *
643118 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGTGATTTCACAAATTCTTCT-AAAATAGCATCCTA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * *
643182 CTTGCAGCGTTTTTATACTATTTGCTCAAAAACGTTAACTCGAAATTATTTTTTCAGGAC
65 CTTGAAGCGTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGAC
*
643242 CTACTGTAGCAAAAGTGCGTCCAC-ATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
* *
643306 ATTGAAGCGTTTTTTAAACTATGTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGAC
65 CTTGAAGCG-TTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGAC
* *
643368 CAACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * * * * *
643433 TTGAAGCTTTTTTTAAACTATTTGCTTAGAAACGTTAACTCAAAATTATTTTTCTAGGAT
66 TTGAAGC-GTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * * * * * * * *
643493 CTACTGTAGCAAAAGCGCGTACACGTGGGAGTGACTTCAAAAATCCTTTTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
643558 TT
66 TT
643560 TGATTTTATC
Statistics
Matches: 385, Mismatches: 50, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
123 4 0.01
124 165 0.43
125 104 0.27
126 111 0.29
127 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:643892 original size:42 final size:40
Alignment explanation
Indices: 643792--643869 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
643782 GACATGGCCA
* * *
643792 CAAAGCGCGCTGACGTGGACGCGATTTGCTGCCACGTCAG
1 CAAATCGCGCTGACGTGGACGCGATTTGCTGACACATCAG
* *
643832 CAAATCGCGCTGATGTGGATGCGATTTGCTGACACATC
1 CAAATCGCGCTGACGTGGACGCGATTTGCTGACACATC
643870 CCTTGACATC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (40 bp):
CAAATCGCGCTGACGTGGACGCGATTTGCTGACACATCAG
Found at i:647639 original size:3 final size:3
Alignment explanation
Indices: 647631--647684 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
647621 TGATTCACCG
* * * * * *
647631 TCA TCA TCA CCA TCA TCA TCA TCG TCA TCA TCG TCG TCG TCG TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
647679 TCA TCA
1 TCA TCA
647685 CTTTCTCGAC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.24, C:0.35, G:0.09, T:0.31
Consensus pattern (3 bp):
TCA
Found at i:647646 original size:12 final size:12
Alignment explanation
Indices: 647625--647662 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
647615 ATTGTTTGAT
647625 TCACCGTCATCA
1 TCACCGTCATCA
*
647637 TCACCATCATCA
1 TCACCGTCATCA
*
647649 TCATCGTCATCA
1 TCACCGTCATCA
647661 TC
1 TC
647663 GTCGTCGTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.39, G:0.05, T:0.29
Consensus pattern (12 bp):
TCACCGTCATCA
Found at i:649196 original size:72 final size:72
Alignment explanation
Indices: 649073--649243 Score: 231
Period size: 72 Copynumber: 2.4 Consensus size: 72
649063 AAAATCATAT
* ** * * *
649073 ATAAACAACTATTGATAAAATTA-ATTTAGTATAAATCAGTAGAACATAAATTTAATATCCAAAT
1 ATAAACAACTATTGATAAAACTAGATTTAACATAAATAAGTAGAACATAAATTCAATATCCAAAA
649137 ACCAAAC
66 ACCAAAC
*
649144 ATAAACAACTATTAATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGATTTA-ACATAAATAAGTAGAACATAAATTCAATATCCAAA
649208 AACCAAAC
65 AACCAAAC
* *
649216 GTAAATAACTATTGATAAAACTAG-TTTA
1 ATAAACAACTATTGATAAAACTAGATTTA
649244 GCATTGTTGT
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
71 24 0.28
72 63 0.72
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.27
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTTAACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:649689 original size:18 final size:18
Alignment explanation
Indices: 649668--649712 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
649658 TCCATCAATT
*
649668 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
*
649686 TGAATATCATTTAAAATG
1 TGAACATCATTTAAAATG
649704 TGAACATCA
1 TGAACATCA
649713 ATTCTCACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:662360 original size:36 final size:37
Alignment explanation
Indices: 662277--662361 Score: 91
Period size: 39 Copynumber: 2.3 Consensus size: 37
662267 GCAGTAAAGC
* *
662277 AAAGCAGTAATCTAGAATTTTCCCTGAAAATTCTAATAA
1 AAAGCAGTAAGCCAGAATTTTCCCT--AAATTCTAATAA
* * **
662316 AAAACAGTAAGCCAGAATTTTCCCT-CATTCTAATCG
1 AAAGCAGTAAGCCAGAATTTTCCCTAAATTCTAATAA
662352 AAAGCAGTAA
1 AAAGCAGTAA
662362 AGTAGTAAGG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
36 17 0.44
39 22 0.56
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (37 bp):
AAAGCAGTAAGCCAGAATTTTCCCTAAATTCTAATAA
Found at i:671177 original size:21 final size:21
Alignment explanation
Indices: 671153--671195 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
671143 ATTATATATT
*
671153 ATTTATGAACTATTATGGTCA
1 ATTTATGAACTATTATAGTCA
*
671174 ATTTATTAACTATTATAGTCA
1 ATTTATGAACTATTATAGTCA
671195 A
1 A
671196 ACTAACCCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (21 bp):
ATTTATGAACTATTATAGTCA
Found at i:672638 original size:3 final size:3
Alignment explanation
Indices: 672632--672656 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
672622 AACTTAAAAA
672632 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
672657 GTGCATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:673812 original size:43 final size:43
Alignment explanation
Indices: 673746--674035 Score: 367
Period size: 43 Copynumber: 6.8 Consensus size: 43
673736 GCGTCGCTAA
673746 CTTTAGCGGCGCTT-TTCCAACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTCTTCC-ACAAACGCCGCTAAAGACCAAGAC
* * *
673789 CTTTAGCGGCGCTTTTTCCACAAATGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGACCAAGAC
*
673832 CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGACCAAGAC
*
673875 CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGACCAAGAC
* *
673918 CTTTAGC-GCGCTTCTTCCAAAAACGCCGCTAAAGACTCTA-AC
1 CTTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGAC-CAAGAC
* * * **
673960 CTTTAGCGGCACTT-TTATCACAAATGCCGCTAAAGAATAA-AC
1 CTTTAGCGGCGCTTCTT-CCACAAACGCCGCTAAAGACCAAGAC
* * *
674002 CTTTACCGGCGCTTC-TCGCAAAAACGCTGCTAAA
1 CTTTAGCGGCGCTTCTTC-CACAAACGCCGCTAAA
674036 AACATAACCT
Statistics
Matches: 219, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
42 67 0.31
43 148 0.68
44 4 0.02
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCGCTTCTTCCACAAACGCCGCTAAAGACCAAGAC
Found at i:673982 original size:85 final size:85
Alignment explanation
Indices: 673746--674035 Score: 383
Period size: 85 Copynumber: 3.4 Consensus size: 85
673736 GCGTCGCTAA
673746 CTTTAGCGGCGCTT-TTCCAACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
1 CTTTAGCGGCGCTTCTTCCAA-AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTT-CAC
*
673810 AAATGCCGCTAAAGACCATGAC
64 AAATGCCGCTAAAGACCAAGAC
* * **
673832 CTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCCCACA
1 CTTTAGCGGCGCTTCTTCCAAAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTT-TTTCACA
*
673897 AACGCCGCTAAAGACCAAGAC
65 AATGCCGCTAAAGACCAAGAC
* *
673918 CTTTAGC-GCGCTTCTTCCAAAAACGCCGCTAAAGACTCTA-ACCTTTAGCGGCACTTTTATCAC
1 CTTTAGCGGCGCTTCTTCCAAAAACGCCGCTAAAGAC-CAAGACCTTTAGCGGCGCTTTT-TCAC
**
673981 AAATGCCGCTAAAGAATAA-AC
64 AAATGCCGCTAAAGACCAAGAC
* *
674002 CTTTACCGGCGCTTC-TCGCAAAAACGCTGCTAAA
1 CTTTAGCGGCGCTTCTTC-CAAAAACGCCGCTAAA
674036 AACATAACCT
Statistics
Matches: 181, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
84 11 0.06
85 83 0.46
86 82 0.45
87 5 0.03
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (85 bp):
CTTTAGCGGCGCTTCTTCCAAAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCACAA
ATGCCGCTAAAGACCAAGAC
Found at i:683466 original size:8 final size:7
Alignment explanation
Indices: 683426--683484 Score: 55
Period size: 7 Copynumber: 7.9 Consensus size: 7
683416 ACCTCTGAAT
683426 CCCTAAC
1 CCCTAAC
* *
683433 TCTTAAC
1 CCCTAAC
683440 CCCTAAC
1 CCCTAAC
*
683447 ACATCTAAC
1 -C-CCTAAC
683456 CCCTAAAC
1 CCCT-AAC
683464 CCCTAAC
1 CCCTAAC
683471 CCTCTAAC
1 CC-CTAAC
683479 CCCTAA
1 CCCTAA
683485 ACATTAAATC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
7 21 0.50
8 16 0.38
9 5 0.12
ACGTcount: A:0.32, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:683471 original size:15 final size:15
Alignment explanation
Indices: 683436--683484 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
683426 CCCTAACTCT
**
683436 TAACCCCTAACACATC
1 TAACCCCTAA-ACCCC
683452 TAACCCCTAAACCCC
1 TAACCCCTAAACCCC
683467 TAACCCTCT-AACCCC
1 TAACCC-CTAAACCCC
683482 TAA
1 TAA
683485 ACATTAAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 18 0.60
16 12 0.40
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (15 bp):
TAACCCCTAAACCCC
Found at i:683476 original size:23 final size:24
Alignment explanation
Indices: 683437--683486 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
683427 CCTAACTCTT
683437 AACCCCTAACACATCTAACCCCTA
1 AACCCCTAACACATCTAACCCCTA
*
683461 AACCCCTAAC-CCTCTAACCCCTA
1 AACCCCTAACACATCTAACCCCTA
683484 AAC
1 AAC
683487 ATTAAATCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (24 bp):
AACCCCTAACACATCTAACCCCTA
Found at i:683514 original size:14 final size:14
Alignment explanation
Indices: 683497--683550 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
683487 ATTAAATCCC
*
683497 AATCCTTAAACCAT
1 AATCCCTAAACCAT
683511 AATCCCTAAACCCAT
1 AATCCCTAAA-CCAT
* * *
683526 ACTCCCTAAACTAA
1 AATCCCTAAACCAT
*
683540 AAACCCTAAAC
1 AATCCCTAAAC
683551 TATAGTGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 20 0.61
15 13 0.39
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.20
Consensus pattern (14 bp):
AATCCCTAAACCAT
Found at i:683531 original size:15 final size:15
Alignment explanation
Indices: 683497--683536 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
683487 ATTAAATCCC
*
683497 AATCCTTAAA-CCAT
1 AATCCCTAAACCCAT
683511 AATCCCTAAACCCAT
1 AATCCCTAAACCCAT
*
683526 ACTCCCTAAAC
1 AATCCCTAAAC
683537 TAAAAACCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.23
Consensus pattern (15 bp):
AATCCCTAAACCCAT
Found at i:683883 original size:41 final size:41
Alignment explanation
Indices: 683822--684016 Score: 309
Period size: 41 Copynumber: 4.8 Consensus size: 41
683812 TAAAATGTTT
* * * **
683822 TTAGCGGCGCTTCTTAAAAAACGCCGCGAAAGTCCTTAGCA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
*
683863 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCGGAGCA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
*
683904 TTAGCGGCGCTTCTTCAAAAACGCCTCTAAAGACCAGAGCA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
683945 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
* *
683986 TTAGCGACGCTTCTTAAAAAACGCCGCTAAA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAA
684017 TCCCCAAAAA
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 144 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.19
Consensus pattern (41 bp):
TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
Found at i:684127 original size:39 final size:39
Alignment explanation
Indices: 684074--684189 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 39
684064 GCGCTTTTTG
684074 GAAAA-CGCCGCTAATGCTCATTTTTAGCGGCATTTTCA
1 GAAAAGCGCCGCTAATGCTCATTTTTAGCGGCATTTTCA
* * * *
684112 GAAAAGCGCCGCTAATACTCGATCTTTAGCGGCGTTTTTTA
1 GAAAAGCGCCGCTAATGCTC-ATTTTTAGCGGC-ATTTTCA
** * * *
684153 G-ATTGCGCCGCTAATGATTGATTTTTAGCGGCGTTTT
1 GAAAAGCGCCGCTAATG-CTCATTTTTAGCGGCATTTT
684190 TTATCCAAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
38 5 0.08
39 17 0.27
40 34 0.54
41 7 0.11
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.34
Consensus pattern (39 bp):
GAAAAGCGCCGCTAATGCTCATTTTTAGCGGCATTTTCA
Found at i:684161 original size:40 final size:40
Alignment explanation
Indices: 684117--684192 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
684107 TTTCAGAAAA
684117 GCGCCGCTAAT-ACTCGATCTTTAGCGGCGTTTTTTAGATT
1 GCGCCGCTAATGA-TCGATCTTTAGCGGCGTTTTTTAGATT
* *
684157 GCGCCGCTAATGATTGATTTTTAGCGGCGTTTTTTA
1 GCGCCGCTAATGATCGATCTTTAGCGGCGTTTTTTA
684193 TCCAAACGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (40 bp):
GCGCCGCTAATGATCGATCTTTAGCGGCGTTTTTTAGATT
Found at i:686264 original size:2 final size:2
Alignment explanation
Indices: 686259--686304 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
686249 ATAATAAAGT
686259 TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
686299 TG TA TA
1 TA TA TA
686305 GGCATCTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:686268 original size:17 final size:19
Alignment explanation
Indices: 686259--686304 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
686249 ATAATAAAGT
686259 TATATATATATATAATATA
1 TATATATATATATAATATA
686278 TATATATATATAT-ATATA
1 TATATATATATATAATATA
*
686296 -ATATGTATA
1 TATATATATA
686305 GGCATCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 8 0.31
18 5 0.19
19 13 0.50
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATATATATATATAATATA
Found at i:686285 original size:23 final size:23
Alignment explanation
Indices: 686259--686304 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
686249 ATAATAAAGT
686259 TATATATATATATAATATATATA
1 TATATATATATATAATATATATA
*
686282 TATATATATATATAATATGTATA
1 TATATATATATATAATATATATA
686305 GGCATCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATATATATATATAATATATATA
Found at i:686345 original size:15 final size:17
Alignment explanation
Indices: 686327--686363 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
686317 ATATAGAAAT
*
686327 AAATACAAATA-AA-CA
1 AAATAAAAATATAAGCA
686342 AAATAAAAATATAAGCA
1 AAATAAAAATATAAGCA
686359 AAATA
1 AAATA
686364 TATTAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 2 0.11
17 7 0.37
ACGTcount: A:0.73, C:0.08, G:0.03, T:0.16
Consensus pattern (17 bp):
AAATAAAAATATAAGCA
Found at i:690657 original size:4 final size:4
Alignment explanation
Indices: 690638--690706 Score: 59
Period size: 4 Copynumber: 16.0 Consensus size: 4
690628 CTCATTTTCC
* *
690638 CTTT TTTT CTTTT CTTT CTTT CTTCT CCTTT -TTT CTTT CTTT CTTT TTTT
1 CTTT CTTT C-TTT CTTT CTTT CTT-T -CTTT CTTT CTTT CTTT CTTT CTTT
690688 CTTT GCTTTT CTTTT CTTT
1 CTTT -C-TTT C-TTT CTTT
690707 TTCTTTTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
3 3 0.05
4 33 0.60
5 13 0.24
6 6 0.11
ACGTcount: A:0.00, C:0.22, G:0.01, T:0.77
Consensus pattern (4 bp):
CTTT
Found at i:690672 original size:17 final size:16
Alignment explanation
Indices: 690638--690712 Score: 71
Period size: 17 Copynumber: 4.5 Consensus size: 16
690628 CTCATTTTCC
* *
690638 CTTTTTTTCTTTTCTTT
1 CTTTCTTTCCTTT-TTT
690655 CTTTCTTCTCCTTTTTT
1 CTTTCTT-TCCTTTTTT
*
690672 CTTTCTTTCTTTTTTT
1 CTTTCTTTCCTTTTTT
*
690688 CTTTGCTTTTCTTTTCTT
1 CTTT-CTTTCCTTTT-TT
690706 -TTTCTTT
1 CTTTCTTT
690713 TTTTTAAGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
16 16 0.32
17 27 0.54
18 7 0.14
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.77
Consensus pattern (16 bp):
CTTTCTTTCCTTTTTT
Found at i:690674 original size:26 final size:25
Alignment explanation
Indices: 690632--690706 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 25
690622 TGGCCTCTCA
690632 TTTTC-CCTTTTTTTCTTTTCTTTCT
1 TTTTCTCC-TTTTTTCTTTTCTTTCT
690657 TTCTTCTCCTTTTTTC-TTTCTTTCT
1 TT-TTCTCCTTTTTTCTTTTCTTTCT
* *
690682 TTTTTTCTTTGCTTTTCTTTTCTTT
1 TTTTCTCCTT--TTTTCTTTTCTTT
690707 TTCTTTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
24 6 0.14
25 13 0.30
26 15 0.35
27 9 0.21
ACGTcount: A:0.00, C:0.23, G:0.01, T:0.76
Consensus pattern (25 bp):
TTTTCTCCTTTTTTCTTTTCTTTCT
Found at i:690696 original size:21 final size:20
Alignment explanation
Indices: 690638--690712 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 20
690628 CTCATTTTCC
690638 CTTTTTTTCTTTTCTTTCTTT
1 CTTTTTTTC-TTTCTTTCTTT
*
690659 CTTCTCCTTT-TTTCTTTCTTT
1 CTT-T-TTTTCTTTCTTTCTTT
690680 CTTTTTTTCTTTGCTTTTCTTT
1 CTTTTTTTCTTT-C-TTTCTTT
*
690702 -TCTTTTTCTTT
1 CTTTTTTTCTTT
690713 TTTTTAAGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
19 3 0.07
20 4 0.09
21 28 0.61
22 8 0.17
23 3 0.07
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.77
Consensus pattern (20 bp):
CTTTTTTTCTTTCTTTCTTT
Found at i:690713 original size:26 final size:27
Alignment explanation
Indices: 690642--690713 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 27
690632 TTTTCCCTTT
690642 TTTTCTTTTC--TTTC-TTTCTTCTCC
1 TTTTCTTTTCTTTTTCTTTTCTTCTCC
* * *
690666 TTTTTTCTTTCTTTCTTTTTTTCTT-TGC
1 TTTTCT-TTTCTTT-TTCTTTTCTTCTCC
690694 TTTTCTTTTCTTTTTCTTTT
1 TTTTCTTTTCTTTTTCTTTT
690714 TTTTAAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
24 5 0.13
25 4 0.11
26 6 0.16
27 8 0.21
28 9 0.24
29 6 0.16
ACGTcount: A:0.00, C:0.21, G:0.01, T:0.78
Consensus pattern (27 bp):
TTTTCTTTTCTTTTTCTTTTCTTCTCC
Found at i:690713 original size:29 final size:29
Alignment explanation
Indices: 690639--690716 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
690629 TCATTTTCCC
*
690639 TTTTTTTC-TTTTCTTTCTTTCTTCTCCT
1 TTTTTTTCTTTTTCTTTTTTTCTTCTCCT
* *
690667 TTTTTCTT-TCTTTCTTTTTTTCTT-TGCT
1 TTTTT-TTCTTTTTCTTTTTTTCTTCTCCT
690695 TTTCTTTTCTTTTTCTTTTTTT
1 TTT-TTTTCTTTTTCTTTTTTT
690717 TAAGAAAAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 13 0.31
29 29 0.69
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.79
Consensus pattern (29 bp):
TTTTTTTCTTTTTCTTTTTTTCTTCTCCT
Found at i:705219 original size:25 final size:24
Alignment explanation
Indices: 705191--705237 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
705181 AACATAACAA
*
705191 TGATCGATAATACTAAAAATAATGG
1 TGATAGATAATAC-AAAAATAATGG
* *
705216 TGATATATAATACAATAATAAT
1 TGATAGATAATACAAAAATAAT
705238 AATAAAAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (24 bp):
TGATAGATAATACAAAAATAATGG
Found at i:706927 original size:127 final size:127
Alignment explanation
Indices: 706773--707075 Score: 453
Period size: 127 Copynumber: 2.4 Consensus size: 127
706763 GATTTGTTTT
* * ** ** ** *
706773 TTAATCCACTCCACTGAAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGTTCCACTGCAACT
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATCTGCCCCACTACAACT
* * * * *
706838 TCAGAGAGATAAGACTGTATGCGATCTGTTCTTTTGCAACTTCAGAGAGATAAGATCTGATG
66 TCAGAGAGATAAAACTGGATGCGATCTGCTATTCTGCAACTTCAGAGAGATAAGATCTGATG
*
706900 TTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTATTTTCTTCAATCTGCCCCACTACAACT
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATCTGCCCCACTACAACT
*
706965 TCAGAGAGATAAAACTGGATGCGATCTGCTATTCTGCAACTTCAGAGAGATAAGATCTGATT
66 TCAGAGAGATAAAACTGGATGCGATCTGCTATTCTGCAACTTCAGAGAGATAAGATCTGATG
*
707027 TTAATCCGCTCTACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAAT
1 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAAT
707076 TTGTTTAATT
Statistics
Matches: 158, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
127 158 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (127 bp):
TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTTTCTTCAATCTGCCCCACTACAACT
TCAGAGAGATAAAACTGGATGCGATCTGCTATTCTGCAACTTCAGAGAGATAAGATCTGATG
Found at i:706931 original size:42 final size:42
Alignment explanation
Indices: 706826--707058 Score: 159
Period size: 42 Copynumber: 5.5 Consensus size: 42
706816 TTCTGTCTGT
** * *
706826 TCCACTGCAACTTCAGAGAGATAAGA-CTGTATG-CGATCTGT
1 TCCACTGCAACTTCAGAGAGATAAGATCTG-ATGTTAATCCGC
***
706867 TCTTTTGCAACTTCAGAGAGATAAGATCTGATGTTAATCCGC
1 TCCACTGCAACTTCAGAGAGATAAGATCTGATGTTAATCCGC
* * * * ** * *
706909 TCCACTGCAACTTTAGGGAGATAGGATTATTTTCTTCAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGA-TCTGATGTT-AATCCGC
* * * ** *
706953 CCCACTACAACTTCAGAGAGATAA-AACTGGATG-CGATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATCT-GATGTTAATCCGC
*** *
706994 TATTCTGCAACTTCAGAGAGATAAGATCTGATTTTAATCCGC
1 TCCACTGCAACTTCAGAGAGATAAGATCTGATGTTAATCCGC
* *
707036 TCTACTGCAACTTCAGGGAGATA
1 TCCACTGCAACTTCAGAGAGATA
707059 GGATTATTTT
Statistics
Matches: 142, Mismatches: 43, Indels: 13
0.72 0.22 0.07
Matches are distributed among these distances:
41 54 0.38
42 56 0.39
43 7 0.05
44 25 0.18
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (42 bp):
TCCACTGCAACTTCAGAGAGATAAGATCTGATGTTAATCCGC
Found at i:707173 original size:50 final size:50
Alignment explanation
Indices: 707119--707384 Score: 196
Period size: 50 Copynumber: 5.3 Consensus size: 50
707109 GCCGTCATGA
* * *
707119 CTTCAATCTATTCCACTACACCACCAGGGAGGTAAGATTCACAGTTGTGG
1 CTTCAATCTATTCCACTACAACACCAGGGAAGTAAGATTCACCGTTGTGG
* ** * * *** *** * *
707169 CTTCAATCTTTTTAATTGCAATGTC-GAGGAAACCAGATTCACCGTCGTAG
1 CTTCAATCTATTCCACTACAACACCAG-GGAAGTAAGATTCACCGTTGTGG
* * * * **
707219 CTTCAATCTGTTCCACCACACCACTAGGGAAGTAAGATTTGCCGTTGTGG
1 CTTCAATCTATTCCACTACAACACCAGGGAAGTAAGATTCACCGTTGTGG
** * * * * *
707269 CTTCAATCTATTCCACTGTAATATC-GAGGAAAT-AGATTCACCGTCGTGA
1 CTTCAATCTATTCCACTACAACACCAG-GGAAGTAAGATTCACCGTTGTGG
* * * *
707318 CTTCAATTTGTTCCACTACATCGCCAGGGAAGTAAGATTCACCGTTGTGG
1 CTTCAATCTATTCCACTACAACACCAGGGAAGTAAGATTCACCGTTGTGG
707368 CTTCAATCTATTCCACT
1 CTTCAATCTATTCCACT
707385 GTAATGCCAA
Statistics
Matches: 151, Mismatches: 60, Indels: 10
0.68 0.27 0.05
Matches are distributed among these distances:
49 36 0.24
50 114 0.75
51 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (50 bp):
CTTCAATCTATTCCACTACAACACCAGGGAAGTAAGATTCACCGTTGTGG
Found at i:707242 original size:100 final size:100
Alignment explanation
Indices: 707069--707376 Score: 388
Period size: 100 Copynumber: 3.1 Consensus size: 100
707059 GGATTATTTT
* * * *
707069 CTTCAAT-TTGTTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTCATGACTTCAATCTATTCC
1 CTTCAATCTT-TTTAATTGCAATGTCGAGGAAACAAGATTCACCGTCGTGACTTCAATCTGTTCC
* *
707133 ACTACACCACCAGGGAGGTAAGATTCACAGTTGTGG
65 ACTACACCACCAGGGAAGTAAGATTCACCGTTGTGG
*
707169 CTTCAATCTTTTTAATTGCAATGTCGAGGAAACCAGATTCACCGTCGT-AGCTTCAATCTGTTCC
1 CTTCAATCTTTTTAATTGCAATGTCGAGGAAACAAGATTCACCGTCGTGA-CTTCAATCTGTTCC
* * **
707233 ACCACACCACTAGGGAAGTAAGATTTGCCGTTGTGG
65 ACTACACCACCAGGGAAGTAAGATTCACCGTTGTGG
* ** * * * * *
707269 CTTCAATCTATTCCACTGTAATATCGAGGAAA-TAGATTCACCGTCGTGACTTCAATTTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGAGGAAACAAGATTCACCGTCGTGACTTCAATCTGTTCCA
* *
707333 CTACATCGCCAGGGAAGTAAGATTCACCGTTGTGG
66 CTACACCACCAGGGAAGTAAGATTCACCGTTGTGG
707368 CTTCAATCT
1 CTTCAATCT
707377 ATTCCACTGT
Statistics
Matches: 180, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
99 67 0.37
100 111 0.62
101 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTCGAGGAAACAAGATTCACCGTCGTGACTTCAATCTGTTCCA
CTACACCACCAGGGAAGTAAGATTCACCGTTGTGG
Found at i:707514 original size:50 final size:50
Alignment explanation
Indices: 707454--707593 Score: 210
Period size: 50 Copynumber: 2.8 Consensus size: 50
707444 TCCAAGCCTT
* * *
707454 AATGCTAGGG-AGATAAGATTCGCCGTCGTGGCTTCAATCTGCTCTGCTAC
1 AATGCCAGGGAAG-TAAGATTCGCCGTTGTGGCTTCAATCTGCTCCGCTAC
*
707504 AATGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGCTCCGCTAC
1 AATGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTGCTCCGCTAC
* *
707554 AATGCCAGGGAAGTAAGACTCGCCGTTGTGGCTTTAATCT
1 AATGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT
707594 ATTCCATTGC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 80 0.98
51 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (50 bp):
AATGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTGCTCCGCTAC
Found at i:727330 original size:26 final size:26
Alignment explanation
Indices: 727294--727357 Score: 119
Period size: 26 Copynumber: 2.5 Consensus size: 26
727284 TACCTTTTTC
*
727294 TAAATTTGAGTCTAGACTAAAAATAT
1 TAAATCTGAGTCTAGACTAAAAATAT
727320 TAAATCTGAGTCTAGACTAAAAATAT
1 TAAATCTGAGTCTAGACTAAAAATAT
727346 TAAATCTGAGTC
1 TAAATCTGAGTC
727358 CAATTCGACT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (26 bp):
TAAATCTGAGTCTAGACTAAAAATAT
Found at i:731023 original size:17 final size:17
Alignment explanation
Indices: 730988--731020 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
730978 TTAAGATAAG
*
730988 TATTAAATTTAATTTAA
1 TATTAAATTTAATTAAA
731005 TATTAAATTT-ATTAAA
1 TATTAAATTTAATTAAA
731021 ATAATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTAAATTTAATTAAA
Found at i:735857 original size:41 final size:41
Alignment explanation
Indices: 735800--736041 Score: 254
Period size: 41 Copynumber: 5.9 Consensus size: 41
735790 ACGAGTTTTT
* * *
735800 GGGCTTTTAGCAGCATTTTTAAAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
* * ** *
735841 TGGG-GTTTAACGGCATTTTTGAAAAAGCGTTGCTACTGCTC
1 -GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
* *
735882 GGGGCTTTAGCGGCATTTTTGAAAAAGTGCCGCTAATGCTC
1 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
* * * *
735923 GGGCCTTTAGCTGCGTTTTTGAAATAGCGCCGCTAATGCTT
1 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
* * * ** * *
735964 GGGCCTTTAACGTCGTTTTTGAAGTAGCGCCACTAATGTTC
1 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
*
736005 GGGCCTTTAGTGG-AGTTTTTGAAAAAGCGCCGCTAAT
1 GGGCCTTTAGCGGCA-TTTTTGAAAAAGCGCCGCTAAT
736042 AATAATAAAA
Statistics
Matches: 165, Mismatches: 33, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
40 3 0.02
41 159 0.96
42 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (41 bp):
GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:736024 original size:123 final size:123
Alignment explanation
Indices: 735800--736041 Score: 290
Period size: 123 Copynumber: 2.0 Consensus size: 123
735790 ACGAGTTTTT
* *
735800 GGGCTTTTAGCAGCATTTTTAAAAAAGCGCCGCTAATGCTCTGGGGTTTAACGGCATTTTTGAAA
1 GGGCCTTTAGCAGCATTTTTAAAAAAGCGCCGCTAATGCTCTGGGCTTTAACGGCATTTTTGAAA
*** * * *
735865 AAGCGTTGCTACTGCTCGGGGCTTTAGCGGCATTTTTGAAAAAGTGCCGCTAATGCTC
66 AAGCGCCACTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
* * * * * *
735923 GGGCCTTTAGCTGCGTTTTTGAAATAGCGCCGCTAATGCT-TGGGCCTTTAACGTCGTTTTTGAA
1 GGGCCTTTAGCAGCATTTTTAAAAAAGCGCCGCTAATGCTCTGGG-CTTTAACGGCATTTTTGAA
** * *
735987 GTAGCGCCACTAATGTTCGGGCCTTTAGTGG-AGTTTTTGAAAAAGCGCCGCTAAT
65 AAAGCGCCACTAATGCTCGGGCCTTTAGCGGCA-TTTTTGAAAAAGCGCCGCTAAT
736042 AATAATAAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
122 5 0.05
123 94 0.95
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (123 bp):
GGGCCTTTAGCAGCATTTTTAAAAAAGCGCCGCTAATGCTCTGGGCTTTAACGGCATTTTTGAAA
AAGCGCCACTAATGCTCGGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:736614 original size:15 final size:13
Alignment explanation
Indices: 736592--736648 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 13
736582 GGGGTTAGAA
736592 GGTTTAGGTGTTAG
1 GGTTTAGGT-TTAG
*
736606 GGATTTAGGATTTAA
1 GG-TTTAGG-TTTAG
736621 GGTTTAGGGTTTTAG
1 GGTTTA-GG-TTTAG
736636 GGTTTAGGGTTTA
1 GGTTTA-GGTTTA
736649 AGTTTAGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
14 10 0.27
15 26 0.70
16 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (13 bp):
GGTTTAGGTTTAG
Found at i:736624 original size:29 final size:28
Alignment explanation
Indices: 736590--736655 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
736580 TAGGGGTTAG
736590 AAGGTTTAGGTGTTAGGGATTTAGGATTT
1 AAGGTTTAGGTGTTAGGG-TTTAGGATTT
* *
736619 AAGGTTTAGGGTTTTAGGGTTTAGGGTTT
1 AAGGTTTA-GGTGTTAGGGTTTAGGATTT
736648 AA-GTTTAG
1 AAGGTTTAG
736656 CTTAATTAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 5 0.15
29 19 0.56
30 9 0.26
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (28 bp):
AAGGTTTAGGTGTTAGGGTTTAGGATTT
Found at i:736627 original size:22 final size:22
Alignment explanation
Indices: 736597--736648 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
736587 TAGAAGGTTT
736597 AGGTGTTAGGGATTTAGGATTTA
1 AGGT-TTAGGGATTTAGGATTTA
* *
736620 AGGTTTAGGGTTTTAGGGTTTA
1 AGGTTTAGGGATTTAGGATTTA
*
736642 GGGTTTA
1 AGGTTTA
736649 AGTTTAGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (22 bp):
AGGTTTAGGGATTTAGGATTTA
Found at i:739688 original size:47 final size:49
Alignment explanation
Indices: 739617--739751 Score: 202
Period size: 47 Copynumber: 2.8 Consensus size: 49
739607 AAAACTAATC
*
739617 TCGAGCCGATGCCATGTCCTAGACATGGTCTTACACTGACTCT-C-ATA
1 TCGAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTATA
* *
739664 TCGAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTCTG
1 TCGAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTATA
* *
739713 TCCGTGACGATGCCATGTCCCAGACATGGTCTTACACTG
1 T-CGAGCCGATGCCATGTCCCAGACATGGTCTTACACTG
739752 GCACACTCAC
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
47 42 0.52
48 1 0.01
49 2 0.03
50 35 0.44
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.27
Consensus pattern (49 bp):
TCGAGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTATA
Found at i:744565 original size:111 final size:112
Alignment explanation
Indices: 744422--744629 Score: 364
Period size: 112 Copynumber: 1.9 Consensus size: 112
744412 ATAAAATTTT
*
744422 TTTCTTTTTTTTCGTGTCAGAATCAGATATAAATATAC-GAAAAAATAAAAAAAAATTTTGGGTG
1 TTTCTTTTTTTTCGTGTCAGAATCAGATATAAATATACGGAAAAAAGAAAAAAAAATTTTGGGTG
** * *
744486 TTGGTCTGTCAATGGCCGGCACCCAGTACAAATTTTTTTAAAAAAAA
66 CCGGCCTGTCAATGGCCGGCACCCAATACAAATTTTTTTAAAAAAAA
744533 TTTCTTTTTTTTCGTGTCAGAATCAGATATAAATATACGGAAAAAAGAAAAAAAAATTTTGGGTG
1 TTTCTTTTTTTTCGTGTCAGAATCAGATATAAATATACGGAAAAAAGAAAAAAAAATTTTGGGTG
744598 CCGGCCTGTCAATGGCCGGCACCCAATACAAA
66 CCGGCCTGTCAATGGCCGGCACCCAATACAAA
744630 ATTAAAATTT
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
111 38 0.42
112 53 0.58
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (112 bp):
TTTCTTTTTTTTCGTGTCAGAATCAGATATAAATATACGGAAAAAAGAAAAAAAAATTTTGGGTG
CCGGCCTGTCAATGGCCGGCACCCAATACAAATTTTTTTAAAAAAAA
Found at i:745388 original size:105 final size:106
Alignment explanation
Indices: 744817--745643 Score: 804
Period size: 97 Copynumber: 8.1 Consensus size: 106
744807 GCAAAATTTA
* * *
744817 ACCCAAATTTTTTTTTTATTTTTTCGTATATTTATATCTGATTCTGACATGAAAAAATAA-AGAA
1 ACCCAAATTTTTTTTTT-TTTTTTCATATATCTATATCTGATTCTGACACGAAAAAA-AAGA-AA
* *
744881 TTTTTTTTAA-TTAGTACTGGGTGTCGGCCATTGACAGGCCAGC
63 TTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
* * * * **
744924 ACTCAAAAATTTTTTTTATTTTTTTT-GTATATTTATATCTGATTCT-A-AC-----ACAA-ATT
1 AC-C-CAAATTTTTTTT-TTTTTTTTCATATATCTATATCTGATTCTGACACGAAAAAAAAGAAA
* *
744980 TTTTTTTTAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAAC
63 TTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
* * * * *
745024 ACCCAAATTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTAACACGAAAAAAAAGAAAATT
1 ACCCAAATTTTTTTTTTTTTTTTCATATATCTATATCTGATTCTGACACGAAAAAAAAG-AAATT
*
745089 TTTTTTAATTTTGTATTGGGTGCCGGCCATTGACA-GCCAGC
65 TTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
* * * * * *
745130 ACCCAAAATTTTTTTATTTTTTTCGTATATTTATATCTGATTTTG--AC-------ATG-AATTT
1 ACCCAAATTTTTTTTTTTTTTTTCATATATCTATATCTGATTCTGACACGAAAAAAAAGAAATTT
745185 TTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
66 TTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
* * * * * *
745226 ACCCAAAAATTTTTTTATTTTTTTCGTATATTTATATCTGATTTTG--AC-------ATG-AATT
1 ACCC-AAATTTTTTTTTTTTTTTTCATATATCTATATCTGATTCTGACACGAAAAAAAAGAAATT
745281 TTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGG-CAGC
65 TTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
*
745322 ACCCAAATTTTTTTTTATTTTTTTCATATATCTATATCTGATTCTGATACGAAAAAAAAG-AATT
1 ACCCAAATTTTTTTTT-TTTTTTTCATATATCTATATCTGATTCTGACACGAAAAAAAAGAAATT
*
745386 TTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAAC
65 TTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
* *
745428 ACCCAATATTTTTTTTCTTTTTTT-ATATATTTATATCTGATTCTGACACGAAAAAAAAAGAAAT
1 ACCCAA-ATTTTTTTTTTTTTTTTCATATATCTATATCTGATTCTGACACG-AAAAAAAAGAAA-
* *
745492 TTTTTTTTAAAATTTGTACTAGGTGCCGGCCATTGACAGGCCAGC
63 TTTTTTTT-AATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
* * *
745537 ACCCAAA-----ATTTTTTTTTTCGTAT-TCTGATATCTGATTCTGACAC-AAAAAAAAGAAAAA
1 ACCCAAATTTTTTTTTTTTTTTTCATATATCT-ATATCTGATTCTGACACGAAAAAAAAG-AAAT
*** * * *
745595 AAATTTT-ACTGTGTATTGGGTGCCGGCCATTGACAGGCCAGC
64 TTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
745637 ACCCAAA
1 ACCCAAA
745644 AAAATTTTTT
Statistics
Matches: 637, Mismatches: 48, Indels: 77
0.84 0.06 0.10
Matches are distributed among these distances:
95 48 0.08
96 44 0.07
97 96 0.15
98 32 0.05
99 12 0.02
100 75 0.12
101 1 0.00
102 13 0.02
103 14 0.02
104 22 0.03
105 70 0.11
106 72 0.11
107 50 0.08
108 30 0.05
109 56 0.09
110 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (106 bp):
ACCCAAATTTTTTTTTTTTTTTTCATATATCTATATCTGATTCTGACACGAAAAAAAAGAAATTT
TTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGC
Found at i:745388 original size:202 final size:199
Alignment explanation
Indices: 744879--745552 Score: 737
Period size: 202 Copynumber: 3.3 Consensus size: 199
744869 AAAAATAAAG
* * *
744879 AATTTTTTTTAA-TTAGTACTGGGTGTCGGCCATTGACAGGCCAGCACTCAAAAATTTTTTTTAT
1 AATTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGCAC-C-CAAATTTTTTTTAT
* * * ** *
744943 TTTTTTTGTATATTTATATCTGATTCTA-ACACAAA-TTTTTTTTTTAAATTTGTACTGGGTGCC
64 TTTTTTCGTATATCTATATCTGATTCTATACAAAAAGAATTTTTTTTAATTTTGTACTGGGTGCC
*
745006 GGCCATTGACAGGCCAACACCC-AAATTTTTTTTATTTTTTTCGTATATTTATATCTGACTCTAA
129 GGCCATTGACAGGCCAACACCCAAAAATTTTTTTATTTTTTTCGTATATTTATATCTGA-T-T--
* *
745070 CACGAAAAAAAAGAA
190 -ATG---AACAAG-A
* *
745085 AATTTTTTTTAATTTTGTATTGGGTGCCGGCCATTGACA-GCCAGCACCCAAAATTTTTTTATTT
1 AATTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTATTT
* *
745149 TTTTCGTATATTTATATCTGATT-T-TGAC---ATGAATTTTTTTTAATTTTGTACTGGGTGCCG
66 TTTTCGTATATCTATATCTGATTCTAT-ACAAAAAGAATTTTTTTTAATTTTGTACTGGGTGCCG
* *
745209 GCCATTGACAGGCCAGCACCCAAAAATTTTTTTATTTTTTTCGTATATTTATATCTGATTTTG-A
130 GCCATTGACAGGCCAACACCCAAAAATTTTTTTATTTTTTTCGTATATTTATATCTGATTATGAA
*
745273 CATG-
195 CAAGA
745277 AATTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGG-CAGCACCCAAATTTTTTTTTATT
1 AATTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAA-TTTTTTTTATT
*
745341 TTTTTCATATATCTATATCTGATTCTGATACGAAAAAAAAGAATTTTTTTTAATTTTGTACTGGG
65 TTTTTCGTATATCTATATCTGATTCT-ATAC----AAAAAGAATTTTTTTTAATTTTGTACTGGG
* * * *
745406 TGCCGGCCATTGACAGGCCAACACCCAATATTTTTTTTCTTTTTTT-ATATATTTATATCTGATT
125 TGCCGGCCATTGACAGGCCAACACCCAAAAATTTTTTTATTTTTTTCGTATATTTATATCTGATT
*
745470 CTGACACGAAAAAAAAAGA
190 ATGA-AC--------AAGA
* *
745489 AATTTTTTTTTAAAATTTGTACTAGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTT
1 AA-TTTTTTTT-AATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAATTTTTTTT
745553 TTCGTATTCT
Statistics
Matches: 406, Mismatches: 30, Indels: 55
0.83 0.06 0.11
Matches are distributed among these distances:
192 49 0.12
193 33 0.08
194 4 0.01
195 2 0.00
196 1 0.00
198 1 0.00
201 21 0.05
202 115 0.28
203 38 0.09
204 38 0.09
205 1 0.00
206 20 0.05
207 23 0.06
211 2 0.00
212 2 0.00
213 8 0.02
214 29 0.07
215 16 0.04
216 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (199 bp):
AATTTTTTTTAATTTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTTATTT
TTTTCGTATATCTATATCTGATTCTATACAAAAAGAATTTTTTTTAATTTTGTACTGGGTGCCGG
CCATTGACAGGCCAACACCCAAAAATTTTTTTATTTTTTTCGTATATTTATATCTGATTATGAAC
AAGA
Found at i:747219 original size:15 final size:15
Alignment explanation
Indices: 747195--747227 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
747185 GAACTGTTGA
747195 CAAACCTTTCAGGCT
1 CAAACCTTTCAGGCT
*
747210 CAAACTTTTCAGGCT
1 CAAACCTTTCAGGCT
747225 CAA
1 CAA
747228 CCCAATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.27
Consensus pattern (15 bp):
CAAACCTTTCAGGCT
Found at i:750207 original size:116 final size:118
Alignment explanation
Indices: 750075--750324 Score: 477
Period size: 116 Copynumber: 2.1 Consensus size: 118
750065 TAGAGGATTA
750075 AAATAAAATTTTATTATTATTAATTTAAAATTATATAAATTAGAAGTTTTCCATTATTCAGATGA
1 AAATAAAATTTTATTATTATTAATTTAAAATTATATAAATTAGAAGTTTTCCATTATTCAGATGA
750140 CATTAATATTTCCCTCTTTTCTGTTTTTCCCCTAATAACCTA-TTTT-TCAAC
66 CATTAATATTTCCCTCTTTTCTGTTTTTCCCCTAATAACCTATTTTTCTCAAC
*
750191 AAATAAAATTTTATTATTATTAATTTAAAATTTTATAAATTAGAAGTTTTCCATTATTCAGATGA
1 AAATAAAATTTTATTATTATTAATTTAAAATTATATAAATTAGAAGTTTTCCATTATTCAGATGA
750256 CATTAATATTTCCCTCTTTTCTGTTTTTCCCCTAATAACCTATTTTTCTCAAC
66 CATTAATATTTCCCTCTTTTCTGTTTTTCCCCTAATAACCTATTTTTCTCAAC
750309 AAATAAAATTTTATTA
1 AAATAAAATTTTATTA
750325 ATAAAGGTAC
Statistics
Matches: 131, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
116 106 0.81
117 4 0.03
118 21 0.16
ACGTcount: A:0.35, C:0.14, G:0.04, T:0.47
Consensus pattern (118 bp):
AAATAAAATTTTATTATTATTAATTTAAAATTATATAAATTAGAAGTTTTCCATTATTCAGATGA
CATTAATATTTCCCTCTTTTCTGTTTTTCCCCTAATAACCTATTTTTCTCAAC
Found at i:751856 original size:2 final size:2
Alignment explanation
Indices: 751849--751886 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
751839 GAGGGTTCCC
* *
751849 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
751887 TTCACACTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:756732 original size:15 final size:15
Alignment explanation
Indices: 756712--756744 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
756702 GATAATCTAT
756712 GTCAACTTTTTTTAC
1 GTCAACTTTTTTTAC
756727 GTCAACTTTTTTTAC
1 GTCAACTTTTTTTAC
756742 GTC
1 GTC
756745 GTCCTAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.09, T:0.52
Consensus pattern (15 bp):
GTCAACTTTTTTTAC
Found at i:757042 original size:9 final size:9
Alignment explanation
Indices: 757028--757057 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
757018 GTTAAATGAA
757028 TCGAGTTAT
1 TCGAGTTAT
*
757037 TCGAGTTAA
1 TCGAGTTAT
757046 TCGAGTTAT
1 TCGAGTTAT
757055 TCG
1 TCG
757058 GATCAACTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:757381 original size:30 final size:31
Alignment explanation
Indices: 757347--757406 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
757337 AAACCTTTTA
* * *
757347 TTTTCCCCCAAAATTTTTATTTCC-TCCCAC
1 TTTTCCCCAAAAACTTTTATTCCCTTCCCAC
757377 TTTTCCCCAAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCAAAAACTTTTATTCCCTTCCCA
757407 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.22, C:0.37, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCAAAAACTTTTATTCCCTTCCCAC
Found at i:759839 original size:108 final size:110
Alignment explanation
Indices: 759644--759915 Score: 394
Period size: 108 Copynumber: 2.5 Consensus size: 110
759634 GAAGTTCAAG
* * ** * * *
759644 AGGATATTTAGCTATTTGGTCAAACGAG--AAATCGAAACCCAGCACATTAGGACACGTTCCTCG
1 AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCG
759707 AATTTCCAAACGCAAAACACTGCCTTA-TTTTGAAAATTTTTTAAA
66 AATTTCCAAACGCAAAACACTGCCTTATTTTTGAAAA-TTTTTAAA
* *
759752 AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACG-TTCCTC
*
759817 GAATTTCCAAACGC-AAA-A-TGCCTTATTTTTTAAAATTTTTAAA
65 GAATTTCCAAACGCAAAACACTGCCTTATTTTTGAAAATTTTTAAA
759860 AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCA
1 AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCA
759916 NNNNNNNNNN
Statistics
Matches: 150, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
108 95 0.63
109 9 0.06
110 27 0.18
111 19 0.13
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (110 bp):
AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCG
AATTTCCAAACGCAAAACACTGCCTTATTTTTGAAAATTTTTAAA
Found at i:760352 original size:3 final size:3
Alignment explanation
Indices: 760344--760391 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
760334 ATGAACTAGT
760344 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
760392 GTTTGAAAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:760552 original size:3 final size:3
Alignment explanation
Indices: 760544--760590 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
760534 AATATCAAGC
*
760544 AAT AAT AAT AAT AAT AAT AAT AAT AGAT AAT AAT -AT ATT AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
760588 AAT
1 AAT
760591 GAAGAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:765278 original size:15 final size:15
Alignment explanation
Indices: 765254--765286 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
765244 GAACTGCTGA
765254 CAAACCTTTCAGGCT
1 CAAACCTTTCAGGCT
*
765269 CAAACTTTTCAGGCT
1 CAAACCTTTCAGGCT
765284 CAA
1 CAA
765287 CCCAATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.27
Consensus pattern (15 bp):
CAAACCTTTCAGGCT
Found at i:777543 original size:78 final size:77
Alignment explanation
Indices: 777450--777698 Score: 295
Period size: 78 Copynumber: 3.2 Consensus size: 77
777440 GAATAACTTT
* * *
777450 ATAAGTTGTGTATCAGCAAAGCTCCTCCATGAGCTAAGGAGAAGTCGTGTATCAGCGAAACTCCC
1 ATAAGTTGTGTATCAGCAAAGCTCCTCCGTGAGCTAAGGACAAGTTGTGTATCAG-GAAACTCCC
* *
777515 TTTAAGCTTATGG
65 TGTGAGCTTATGG
*
777528 ATAAGTTGTGTATCAGCAAAGCT-CTCCGTGAGCTAAGGACAAGTTGTGTATCAGAAAATCTCCC
1 ATAAGTTGTGTATCAGCAAAGCTCCTCCGTGAGCTAAGGACAAGTTGTGTATCAGGAAA-CT-CC
*
777592 CTGTGAGCTTATGA
64 CTGTGAGCTTATGG
* * * * * * *
777606 ATAAGCTGTGTATCACCAAAGCTCCTGCGTGAGCGAAGGATAAGTTGT-TATAAGGGAAGCTCCT
1 ATAAGTTGTGTATCAGCAAAGCTCCTCCGTGAGCTAAGGACAAGTTGTGTATCA-GGAAACTCC-
*
777670 CTGTGATCTTATGG
64 CTGTGAGCTTATGG
*
777684 ATAACTTGTGTATCA
1 ATAAGTTGTGTATCA
777699 ACGAAGATCC
Statistics
Matches: 147, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
76 3 0.02
77 32 0.22
78 88 0.60
79 24 0.16
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (77 bp):
ATAAGTTGTGTATCAGCAAAGCTCCTCCGTGAGCTAAGGACAAGTTGTGTATCAGGAAACTCCCT
GTGAGCTTATGG
Found at i:777619 original size:40 final size:39
Alignment explanation
Indices: 777450--777698 Score: 175
Period size: 39 Copynumber: 6.4 Consensus size: 39
777440 GAATAACTTT
* * *
777450 ATAAGTTGTGTATCAGCAAAGCTCCTCCATGAGC-TAAGG
1 ATAAGTTGTGTATCAGAAAAGCTCC-CCGTGAGCTTATGG
* * * ** *
777489 AGAAGTCGTGTATCAGCGAAA-CTCCCTTTAAGCTTATGG
1 ATAAGTTGTGTATCAG-AAAAGCTCCCCGTGAGCTTATGG
* * *
777528 ATAAGTTGTGTATCAGCAAAGCTCTCCGTGAGC-TAAGG
1 ATAAGTTGTGTATCAGAAAAGCTCCCCGTGAGCTTATGG
* * *
777566 ACAAGTTGTGTATCAGAAAATCTCCCCTGTGAGCTTATGA
1 ATAAGTTGTGTATCAGAAAAGCTCCCC-GTGAGCTTATGG
* ** * * *
777606 ATAAGCTGTGTATCACCAAAGCTCCTGCGTGAGC-GAAGG
1 ATAAGTTGTGTATCAGAAAAGCTCC-CCGTGAGCTTATGG
* ** * *
777645 ATAAGTTGT-TATAAGGGAAGCTCCTCTGTGATCTTATGG
1 ATAAGTTGTGTATCAGAAAAGCTCC-CCGTGAGCTTATGG
*
777684 ATAACTTGTGTATCA
1 ATAAGTTGTGTATCA
777699 ACGAAGATCC
Statistics
Matches: 160, Mismatches: 42, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
38 52 0.32
39 71 0.44
40 36 0.22
41 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (39 bp):
ATAAGTTGTGTATCAGAAAAGCTCCCCGTGAGCTTATGG
Found at i:777765 original size:43 final size:42
Alignment explanation
Indices: 777686--777769 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
777676 TCTTATGGAT
* * *
777686 AACTTGTGTATCAACGAAGATCCCATGTAAGCTTAAGTGATG
1 AACTTGTGTACCAACAAAGATCCCATGCAAGCTTAAGTGATG
* *
777728 AACTTGTGTCCCAACAAAGCTCCCTATGCAAGCTTAAGTGAT
1 AACTTGTGTACCAACAAAGATCCC-ATGCAAGCTTAAGTGAT
777770 AGTGCCCTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.56
43 16 0.44
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
AACTTGTGTACCAACAAAGATCCCATGCAAGCTTAAGTGATG
Found at i:781674 original size:20 final size:19
Alignment explanation
Indices: 781645--781684 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
781635 GGGTTGAATT
781645 ATGAGAAATGAGATATGAA
1 ATGAGAAATGAGATATGAA
*
781664 ATGATGAAATGAGATGTGAA
1 ATGA-GAAATGAGATATGAA
781684 A
1 A
781685 CTTGAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.23
Consensus pattern (19 bp):
ATGAGAAATGAGATATGAA
Found at i:782500 original size:31 final size:31
Alignment explanation
Indices: 782462--782527 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
782452 CTGACACACG
782462 GTCATTTGTCACACACGAGCATGTGACCCAA
1 GTCATTTGTCACACACGAGCATGTGACCCAA
*
782493 GTCATTTGTCACATACGAGCATGTGACCCAA
1 GTCATTTGTCACACACGAGCATGTGACCCAA
782524 GTCA
1 GTCA
782528 GCCACACTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (31 bp):
GTCATTTGTCACACACGAGCATGTGACCCAA
Found at i:783445 original size:18 final size:19
Alignment explanation
Indices: 783412--783447 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
783402 AAGCTGTAAG
783412 AAACTAAACATAATTAAAT
1 AAACTAAACATAATTAAAT
*
783431 AAACTAAA-GTAATTAAA
1 AAACTAAACATAATTAAA
783448 ACGTCTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.25
Consensus pattern (19 bp):
AAACTAAACATAATTAAAT
Found at i:785403 original size:19 final size:19
Alignment explanation
Indices: 785379--785416 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
785369 TACGTTTTTG
*
785379 AGATCGTTACTTTGTGTAC
1 AGATCGTTACTTTGAGTAC
*
785398 AGATCGTTGCTTTGAGTAC
1 AGATCGTTACTTTGAGTAC
785417 TACAAGACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (19 bp):
AGATCGTTACTTTGAGTAC
Found at i:787062 original size:41 final size:41
Alignment explanation
Indices: 787005--787118 Score: 158
Period size: 41 Copynumber: 2.8 Consensus size: 41
786995 TTATTGCCAG
* * *
787005 TGAAATAATTCAGACTTTATGTCTAGCAGGCTTGATGTCGC
1 TGAAATATTTCAGACTTTATGTCTAGCAGGCTCGATGCCGC
*
787046 TGAAATATTTCAGACTTTATGTCTAGCAGGCTCGATGCCGG
1 TGAAATATTTCAGACTTTATGTCTAGCAGGCTCGATGCCGC
* *
787087 TGAAATGTTTC-GAGCTTTACGTCTAGCAGGCT
1 TGAAATATTTCAGA-CTTTATGTCTAGCAGGCT
787119 AATTGCCGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 2 0.03
41 64 0.97
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (41 bp):
TGAAATATTTCAGACTTTATGTCTAGCAGGCTCGATGCCGC
Found at i:787126 original size:41 final size:40
Alignment explanation
Indices: 786999--787129 Score: 156
Period size: 41 Copynumber: 3.2 Consensus size: 40
786989 TTAGATTTAT
* *
786999 TGCCAGTGAAATAATTCAGACTTTATGTCTAGCAGGCTTGA
1 TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGC-TGA
* *
787040 TGTCGCTGAAATATTTCAGACTTTATGTCTAGCAGGCTCGA
1 TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGCT-GA
* * *
787081 TGCCGGTGAAATGTTTC-GAGCTTTACGTCTAGCAGGCTAA
1 TGCCGGTGAAATATTTCAGA-CTTTATGTCTAGCAGGCTGA
787121 TTGCCGGTG
1 -TGCCGGTG
787130 TATTGAAACA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.95
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (40 bp):
TGCCGGTGAAATATTTCAGACTTTATGTCTAGCAGGCTGA
Found at i:796679 original size:15 final size:15
Alignment explanation
Indices: 796659--796687 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
796649 AAAACAACAT
796659 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
796674 AACTCTTGACCTTT
1 AACTCTTGACCTTT
796688 TACTTACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:800924 original size:15 final size:15
Alignment explanation
Indices: 800904--800934 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
800894 AAAACAACAT
800904 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
800919 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
800934 A
1 A
800935 CTTACATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:803516 original size:44 final size:44
Alignment explanation
Indices: 803463--803581 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 44
803453 GATACGATCT
* *
803463 GCTCT-CTGCAACTTTAGAGAGATAAGATTTGTGATTTTAATCC
1 GCTCTACTGCAACTTCAGAGAGATAAGATTTGTGACTTTAATCC
* * *
803506 GCTCTACTGCAACTTCAGTGAGATATGATTAT-TGACTTTAATCT
1 GCTCTACTGCAACTTCAGAGAGATAAGATT-TGTGACTTTAATCC
* * *
803550 ACTCCACTGCAACTTCAGGGAGATAAGATTTG
1 GCTCTACTGCAACTTCAGAGAGATAAGATTTG
803582 CCGTCTTCAG
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 6 0.09
44 57 0.89
45 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (44 bp):
GCTCTACTGCAACTTCAGAGAGATAAGATTTGTGACTTTAATCC
Found at i:803908 original size:51 final size:51
Alignment explanation
Indices: 803781--803922 Score: 149
Period size: 51 Copynumber: 2.8 Consensus size: 51
803771 TAACGCGAGG
* * * **
803781 GAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCCCCACTACAATGCTAGG
1 GAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTACAATGCCAAA
* * * * * *
803832 GAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAATGCCAAA
1 GAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTACAATGCCAAA
* * * *
803883 GAGATAGGATTCGCTTCCCACAGCTTTAATCCGCTCCACT
1 GAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACT
803923 TCAGCTATTT
Statistics
Matches: 71, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (51 bp):
GAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTACAATGCCAAA
Found at i:804077 original size:51 final size:51
Alignment explanation
Indices: 803945--804091 Score: 150
Period size: 51 Copynumber: 2.9 Consensus size: 51
803935 AGTCTTAACA
* * * *
803945 CCAATGAGATAAGATTCGCTGCCCTCAGCTTTAATTTGCTCCGCTACAATG
1 CCAAAGAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTACAATG
* ** * * * * * *
803996 CTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAATG
1 CCAAAGAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTACAATG
* * *
804047 CCAAAGAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCACT
1 CCAAAGAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACT
804092 TTAGCTTTTT
Statistics
Matches: 73, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (51 bp):
CCAAAGAGATAAGATTCGCTACCCTCAGCTTTAATCTGCTCCACTACAATG
Found at i:804156 original size:169 final size:168
Alignment explanation
Indices: 803688--804159 Score: 766
Period size: 169 Copynumber: 2.8 Consensus size: 168
803678 CATTGTGGCC
* * * * *
803688 TTAATCTGCTCCACTTTAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTTAATCTGCTCCGC
1 TTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCAC
* *
803753 TTTAGCTATTTCAAGTCTTAA-CGCGAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCCC
66 TTTAGCTATTTCAAGTCTTAACCCCGA--GAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTC
*
803817 CACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCT
129 CGCTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCT
*
803857 TTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTTCCCACAGCTTTAATCCGCTCCAC
1 TTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCAC
* * * *
803922 TTCAGCTATTTCAAGTCTTAACACCAATGAGATAAGATTCGCTGCCCTCAGCTTTAATTTGCTCC
66 TTTAGCTATTTCAAGTCTTAACCCCGA-GAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCC
803987 GCTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCT
130 GCTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCT
804026 TTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCAC
1 TTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCAC
* *
804091 TTTAGCTTTTTCAAGTCTTAACTCCCGAGAGATAAGATTCGCTGCCCTTAGCTTTAATCTGCTCC
66 TTTAGCTATTTCAAGTCTTAAC-CCCGAGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCC
804156 GCTA
130 GCTA
804160 TAACGTTATG
Statistics
Matches: 281, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
169 276 0.98
170 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (168 bp):
TTAATCTGTTCCACTATAATGCCAAAGAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCAC
TTTAGCTATTTCAAGTCTTAACCCCGAGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCG
CTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCT
Found at i:804244 original size:43 final size:44
Alignment explanation
Indices: 804178--804268 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 44
804168 TGAAAGTAAA
*
804178 ATTCGCAATCTTCAACCTATTCCACTGCTAACCAGGGACATAGG
1 ATTCGCAATCGTCAACCTATTCCACTGCTAACCAGGGACATAGG
* * **
804222 ATTC-CAATCGTCAACCTATTCCAGTGCTGACCAGGGAGGTAGG
1 ATTCGCAATCGTCAACCTATTCCACTGCTAACCAGGGACATAGG
804265 ATTC
1 ATTC
804269 ACCTATTCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 38 0.90
44 4 0.10
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (44 bp):
ATTCGCAATCGTCAACCTATTCCACTGCTAACCAGGGACATAGG
Found at i:804343 original size:78 final size:77
Alignment explanation
Indices: 804192--804345 Score: 209
Period size: 78 Copynumber: 2.0 Consensus size: 77
804182 GCAATCTTCA
* * * * **
804192 ACCTATTCCACTGCTAACCAGGGACATAGGATTCCAATCGTCAACCTATTCCAGTGCTGACCAGG
1 ACCTATTCCACTGCTAACCAGGGACATAAGATTACAATCGTCAACCTATTCCACTACTGACCAAC
*
804257 GAGGTAGGATTC
66 GAGATAGGATTC
* * *
804269 ACCTATTCCACTGCTGACCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTACTGACCAA
1 ACCTATTCCACTGCTAACCAGGGACATAAGA-TTACAATCGTCAACCTATTCCACTACTGACCAA
804334 CGAGATAGGATT
65 CGAGATAGGATT
804346 ATTGGCTTCA
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
77 28 0.42
78 38 0.58
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (77 bp):
ACCTATTCCACTGCTAACCAGGGACATAAGATTACAATCGTCAACCTATTCCACTACTGACCAAC
GAGATAGGATTC
Found at i:808502 original size:9 final size:9
Alignment explanation
Indices: 808483--808515 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
808473 ATACAAAGCT
808483 AATGC-ATG
1 AATGCAATG
808491 AATGCAATG
1 AATGCAATG
*
808500 AATGCCATG
1 AATGCAATG
808509 AATGCAA
1 AATGCAA
808516 AAGAAGAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (9 bp):
AATGCAATG
Found at i:818946 original size:5 final size:5
Alignment explanation
Indices: 818927--818969 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
818917 CAAGTGCAGG
818927 AAATA AGAA-A AAATA AAATA AAATA AAATA AAATA AATATA AA
1 AAATA A-AATA AAATA AAATA AAATA AAATA AAATA AA-ATA AA
818970 GAATATAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 2 0.06
5 26 0.74
6 7 0.20
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:827563 original size:110 final size:110
Alignment explanation
Indices: 827380--827588 Score: 364
Period size: 110 Copynumber: 1.9 Consensus size: 110
827370 TGATATTCAA
*
827380 GTTTTAAAAATGATACCTCCATGATTTTTGAAAGTGCAGGAAGTCAGTAACGTAATTTGATATTG
1 GTTTTAAAAATGATACCTCCATGATTTTTGAAAGTGCAGGAAGTCAGTAACATAATTTGATATTG
*
827445 ATATCATAGCACGAGCATCAATACTTGGGGTAAATTGATATATAG
66 ATACCATAGCACGAGCATCAATACTTGGGGTAAATTGATATATAG
* *
827490 GTTTTAAAAATGATACCTCCATGATTTTTGAAAGTGCAGGAAGTCGGTATCATAATTTGATATTG
1 GTTTTAAAAATGATACCTCCATGATTTTTGAAAGTGCAGGAAGTCAGTAACATAATTTGATATTG
* *
827555 ATACCATAGCATGAGTATCAATACTTGGGGTAAA
66 ATACCATAGCACGAGCATCAATACTTGGGGTAAA
827589 ATAATCGATA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 93 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (110 bp):
GTTTTAAAAATGATACCTCCATGATTTTTGAAAGTGCAGGAAGTCAGTAACATAATTTGATATTG
ATACCATAGCACGAGCATCAATACTTGGGGTAAATTGATATATAG
Found at i:833746 original size:16 final size:18
Alignment explanation
Indices: 833727--833764 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
833717 ATTTATATCA
833727 ATATGAAA-A-AATATAT
1 ATATGAAACATAATATAT
*
833743 ATATGAAACATGATATAT
1 ATATGAAACATAATATAT
833761 ATAT
1 ATAT
833765 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (18 bp):
ATATGAAACATAATATAT
Found at i:833760 original size:2 final size:2
Alignment explanation
Indices: 833755--833779 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
833745 ATGAAACATG
833755 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
833780 CACAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:836770 original size:21 final size:20
Alignment explanation
Indices: 836738--836776 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
836728 TTTAAAAATT
*
836738 TTAAAAATTCTATAAAAACA
1 TTAAAAAATCTATAAAAACA
836758 TTAAAGAAATCTATAAAAA
1 TTAAA-AAATCTATAAAAA
836777 TTAGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.28
Consensus pattern (20 bp):
TTAAAAAATCTATAAAAACA
Found at i:837300 original size:21 final size:21
Alignment explanation
Indices: 837276--837318 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
837266 ATTATATATT
837276 ATTTATGAACTATTATAGTCA
1 ATTTATGAACTATTATAGTCA
* *
837297 ATTTATTAATTATTATAGTCA
1 ATTTATGAACTATTATAGTCA
837318 A
1 A
837319 ACTAACCCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (21 bp):
ATTTATGAACTATTATAGTCA
Found at i:838777 original size:3 final size:3
Alignment explanation
Indices: 838771--838795 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
838761 AACTTAAAAA
838771 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
838796 GTGCATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:839373 original size:3 final size:3
Alignment explanation
Indices: 839365--839401 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
839355 NNNNNNNNNN
839365 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
839402 GTGCATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:840341 original size:28 final size:28
Alignment explanation
Indices: 840301--840360 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
840291 TGCCTTTCCT
*
840301 ATATGTTTACTTCTTAAGTTTATACACC
1 ATATATTTACTTCTTAAGTTTATACACC
840329 ATATATTTACTTCTTAAGTTTATACACC
1 ATATATTTACTTCTTAAGTTTATACACC
840357 ATAT
1 ATAT
840361 GACATTTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.05, T:0.47
Consensus pattern (28 bp):
ATATATTTACTTCTTAAGTTTATACACC
Found at i:842700 original size:18 final size:19
Alignment explanation
Indices: 842677--842712 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
842667 NNNNNNNNNN
842677 AAGAAAGAAAA-AGAAAGA
1 AAGAAAGAAAAGAGAAAGA
842695 AAGAAAGAAAAGAGAAAG
1 AAGAAAGAAAAGAGAAAG
842713 GAGAACGACG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (19 bp):
AAGAAAGAAAAGAGAAAGA
Found at i:843105 original size:72 final size:73
Alignment explanation
Indices: 843023--843167 Score: 283
Period size: 72 Copynumber: 2.0 Consensus size: 73
843013 TGAAAATAGG
843023 GAGCTAAAATTTAGCTTAGAGTGAAATTAGTATAAAATTTGACTTTAAATATGGAAA-TAAAATT
1 GAGCTAAAATTTAGCTTAGAGTGAAATTAGTATAAAATTTGACTTTAAATATGGAAATTAAAATT
843087 AGTCATGA
66 AGTCATGA
843095 GAGCTAAAATTTAGCTTAGAGTGAAATTAGTATAAAATTTGACTTTAAATATGGAAATTAAAATT
1 GAGCTAAAATTTAGCTTAGAGTGAAATTAGTATAAAATTTGACTTTAAATATGGAAATTAAAATT
843160 AGTCATGA
66 AGTCATGA
843168 TTTAGGGACT
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
72 57 0.79
73 15 0.21
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.34
Consensus pattern (73 bp):
GAGCTAAAATTTAGCTTAGAGTGAAATTAGTATAAAATTTGACTTTAAATATGGAAATTAAAATT
AGTCATGA
Found at i:852629 original size:36 final size:36
Alignment explanation
Indices: 852574--852669 Score: 149
Period size: 36 Copynumber: 2.7 Consensus size: 36
852564 AATTATCACT
* * *
852574 CTTA-AATAACACAACTATATCATTAGGCCGAATCA
1 CTTATAATATCACAAGTATATCAATAGGCCGAATCA
852609 CTTATAATATCACAAGTATATCAATAGGCCGAATCA
1 CTTATAATATCACAAGTATATCAATAGGCCGAATCA
*
852645 CTTATAATATCACAAGTACATCAAT
1 CTTATAATATCACAAGTATATCAAT
852670 TCAAATATAC
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
35 4 0.07
36 52 0.93
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (36 bp):
CTTATAATATCACAAGTATATCAATAGGCCGAATCA
Found at i:852921 original size:41 final size:42
Alignment explanation
Indices: 852876--852978 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
852866 CCGCTTTCCT
*
852876 AGACAGGGTCTTACACGAAACA-AA-TACAATGCCAATGTCCC
1 AGACAGGGTCTTACACGAAACATAAGT-CAATGCCAACGTCCC
* * **
852917 AGACATGGTCTTACACGTAACATAAGTTGATGCCAACGTCCC
1 AGACAGGGTCTTACACGAAACATAAGTCAATGCCAACGTCCC
852959 AGAC-GTGGTCTTACACGAAA
1 AGACAG-GGTCTTACACGAAA
852979 ACACATATCG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
41 20 0.38
42 31 0.60
43 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.20
Consensus pattern (42 bp):
AGACAGGGTCTTACACGAAACATAAGTCAATGCCAACGTCCC
Found at i:854136 original size:91 final size:91
Alignment explanation
Indices: 854024--854233 Score: 402
Period size: 91 Copynumber: 2.3 Consensus size: 91
854014 TACTGCTGTT
*
854024 TTAATACACCAAACAATAGTCCTTAAAACAATATAAATACAGTCACTTAGACAACATTAATTGAC
1 TTAATACACCAAACAACAGTCCTTAAAACAATATAAATACAGTCACTTAGACAACATTAATTGAC
*
854089 GACTAAACAAGAATTTTTCTGTTGCA
66 GACTAAACAAGAATTTTTCTGCTGCA
854115 TTAATACACCAAACAACAGTCCTTAAAACAATATAAATACAGTCACTTAGACAACATTAATTGAC
1 TTAATACACCAAACAACAGTCCTTAAAACAATATAAATACAGTCACTTAGACAACATTAATTGAC
854180 GACTAAACAAGAATTTTTCTGCTGCA
66 GACTAAACAAGAATTTTTCTGCTGCA
854206 TTAATACACCAAACAACAGTCCTTAAAA
1 TTAATACACCAAACAACAGTCCTTAAAA
854234 TAACATATTT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 117 1.00
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (91 bp):
TTAATACACCAAACAACAGTCCTTAAAACAATATAAATACAGTCACTTAGACAACATTAATTGAC
GACTAAACAAGAATTTTTCTGCTGCA
Found at i:855033 original size:13 final size:13
Alignment explanation
Indices: 855015--855039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
855005 TATTTTAATA
855015 TTATTTTGTGTGT
1 TTATTTTGTGTGT
855028 TTATTTTGTGTG
1 TTATTTTGTGTG
855040 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:856497 original size:41 final size:41
Alignment explanation
Indices: 856448--856723 Score: 500
Period size: 41 Copynumber: 6.8 Consensus size: 41
856438 GACTTTAAGT
*
856448 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
856489 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
856530 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
856571 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
856612 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
* * *
856653 CTAGCAGGCTACGTGCCGGTGATTTGAATCAGGTTACAAAC
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
*
856694 CTAGCAGGCTACGTG-CGGTGATCTGAATCA
1 CTAGCAGGCTACGCGCCGGTGATCTGAATCA
856724 TGCTATAAGT
Statistics
Matches: 230, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
40 14 0.06
41 216 0.94
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTACGCGCCGGTGATCTGAATCAGGTTATAAAC
Done.