Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1850

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1246
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39


Found at i:1062 original size:60 final size:61

Alignment explanation


    Indices: 943--1077  Score: 148
    Period size: 60  Copynumber: 2.2  Consensus size: 61

        933 TCAATTCAAT

                 *                         *     *    *     *  *  *      
        943 TCTAAATCTAAAAAATTCAACAAATTTAACCTTCAACGTTTATAAAATTTGTCATTTTAG-
          1 TCTAATTCTAAAAAATTCAACAAATTTAACCCTCAACATTTACAAAATATGACAATTTAGC

             *                   *       *               *                
       1003 TTTGAATTCTAAAAAATT-AATAAATTTAGCCCTCAACATTTACATAATATGACAATTTAGC
          1 TCT-AATTCTAAAAAATTCAACAAATTTAACCCTCAACATTTACAAAATATGACAATTTAGC

                          
       1064 TCTAATTCTAAAAA
          1 TCTAATTCTAAAAA

       1078 TTTTAAAAAG


Statistics
Matches: 61,  Mismatches: 12, Indels: 4
        0.79            0.16        0.05

Matches are distributed among these distances:
  60   46  0.75
  61   15  0.25

ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37


Consensus pattern (61 bp):   
TCTAATTCTAAAAAATTCAACAAATTTAACCCTCAACATTTACAAAATATGACAATTTAGC
Done.