Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4411

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 322

Length: 537
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41


Found at i:343 original size:26 final size:27

Alignment explanation


    Indices: 298--349  Score: 70
    Period size: 26  Copynumber: 2.0  Consensus size: 27

        288 AAACCCCAAA

                           *           
        298 TTTTCTTTCCTTCCTTCCCT-TTTTCT
          1 TTTTCTTTCCTTCCTCCCCTGTTTTCT

                    *   *             
        324 TTTTCTTTTCTTTCTCCCCTGTTTTC
          1 TTTTCTTTCCTTCCTCCCCTGTTTTC

        350 GTTTGCCTAT


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  26   17  0.77
  27    5  0.23

ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65


Consensus pattern (27 bp):   
TTTTCTTTCCTTCCTCCCCTGTTTTCT

Done.