Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3880

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 380

Length: 634
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31


Found at i:199 original size:5 final size:5

Alignment explanation


    Indices: 191--219  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

        181 TTTGTATTGA

                                              
        191 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
          1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA

        220 CAGAAAAGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (5 bp):   
AAAAT

Done.