Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3118

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 477

Length: 796
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39


Found at i:753 original size:31 final size:29

Alignment explanation


    Indices: 718--793  Score: 71
    Period size: 29  Copynumber: 2.5  Consensus size: 29

        708 ATCTCAAAAT

                                    *     *
        718 TATACGTGAACTTTGATTTAACGTGCAATTG
          1 TATACGTGAACTTT-ATTTAA-GTACAATTA

                 **           *          
        749 TATACACGAACTTTATTTTAGTACAATTA
          1 TATACGTGAACTTTATTTAAGTACAATTA

               *            
        778 TATGCGTGAAACTTTA
          1 TATACGTG-AACTTTA

        794 ATT


Statistics
Matches: 36,  Mismatches: 8, Indels: 3
        0.77            0.17        0.06

Matches are distributed among these distances:
  29   12  0.33
  30   12  0.33
  31   12  0.33

ACGTcount: A:0.33, C:0.13, G:0.14, T:0.39


Consensus pattern (29 bp):   
TATACGTGAACTTTATTTAAGTACAATTA
Done.