Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3284

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 463

Length: 772
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.14

Warning! 324 characters in sequence are not A, C, G, or T


Found at i:173 original size:15 final size:15

Alignment explanation


    Indices: 154--206  Score: 65
    Period size: 15  Copynumber: 3.6  Consensus size: 15

        144 TAGGTACGTA

                            
        154 AAAAAAAGTTTG-AA-
          1 AAAAAAA-TTTGAAAG

                     *     
        168 AAAAAAATTCGAAAG
          1 AAAAAAATTTGAAAG

                   *       
        183 AAAAAAAATTGAAAG
          1 AAAAAAATTTGAAAG

                     
        198 AAAAAAATT
          1 AAAAAAATT

        207 GCATACGGTC


Statistics
Matches: 33,  Mismatches: 4, Indels: 3
        0.82            0.10        0.08

Matches are distributed among these distances:
  13    3  0.09
  14    9  0.27
  15   21  0.64

ACGTcount: A:0.70, C:0.02, G:0.11, T:0.17


Consensus pattern (15 bp):   
AAAAAAATTTGAAAG

Found at i:207 original size:14 final size:15

Alignment explanation


    Indices: 167--204  Score: 67
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        157 AAAAGTTTGA

                            
        167 AAAAAAAATTCGAAAG
          1 AAAAAAAATT-GAAAG

                           
        183 AAAAAAAATTGAAAG
          1 AAAAAAAATTGAAAG

                   
        198 AAAAAAA
          1 AAAAAAA

        205 TTGCATACGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   12  0.55
  16   10  0.45

ACGTcount: A:0.76, C:0.03, G:0.11, T:0.11


Consensus pattern (15 bp):   
AAAAAAAATTGAAAG
Done.