Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold85
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1711616
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 47147 characters in sequence are not A, C, G, or T
File 3 of 5
Found at i:698006 original size:38 final size:38
Alignment explanation
Indices: 697964--698037 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
697954 AACCTAATTA
697964 AATTAAAAACCCTAACCTAATTAAATAAAAAACCCTTT
1 AATTAAAAACCCTAACCTAATTAAATAAAAAACCCTTT
*
698002 AATTAAAAACCCTAACCTAATTAAATTAAAAACCCT
1 AATTAAAAACCCTAACCTAATTAAATAAAAAACCCT
698038 AACCTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.26
Consensus pattern (38 bp):
AATTAAAAACCCTAACCTAATTAAATAAAAAACCCTTT
Found at i:698128 original size:21 final size:21
Alignment explanation
Indices: 698097--698242 Score: 206
Period size: 21 Copynumber: 6.9 Consensus size: 21
698087 CTTAACCTAA
*
698097 TTAAATTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
698118 GTT-ACTTAAAAACCCTAACCC
1 -TTAACTTAAAAACCCTAACCC
698139 TTAACTT-AAAACCCTAACCCCC
1 TTAACTTAAAAACCCTAA--CCC
698161 TTAACTTAAAAACCCTAACCC
1 TTAACTTAAAAACCCTAACCC
698182 TTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AACCC
* *
698204 TTAACTTAAAAACACTTACCC
1 TTAACTTAAAAACCCTAACCC
*
698225 TTAACTTTAAAACCCTAA
1 TTAACTTAAAAACCCTAA
698243 ACTAAGTTAA
Statistics
Matches: 113, Mismatches: 6, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
20 12 0.11
21 59 0.52
22 32 0.28
23 10 0.09
ACGTcount: A:0.42, C:0.32, G:0.01, T:0.25
Consensus pattern (21 bp):
TTAACTTAAAAACCCTAACCC
Found at i:698169 original size:43 final size:42
Alignment explanation
Indices: 698105--698242 Score: 206
Period size: 43 Copynumber: 3.2 Consensus size: 42
698095 AATTAAATTA
*
698105 AAAACCCTAACCCGTT-ACTTAAAAACCCTAACCCTTAACTT
1 AAAACCCTAACCCCTTAACTTAAAAACCCTAACCCTTAACTT
698146 AAAACCCTAACCCCCTTAACTTAAAAACCCTAACCCTTAACTT
1 AAAACCCTAA-CCCCTTAACTTAAAAACCCTAACCCTTAACTT
* * *
698189 AAAAACCCTAAACCCTTAACTTAAAAACACTTACCCTTAACTTT
1 -AAAACCCTAACCCCTTAACTTAAAAACCCTAACCCTTAAC-TT
698233 AAAACCCTAA
1 AAAACCCTAA
698243 ACTAAGTTAA
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
41 10 0.11
42 5 0.06
43 62 0.70
44 12 0.13
ACGTcount: A:0.42, C:0.33, G:0.01, T:0.24
Consensus pattern (42 bp):
AAAACCCTAACCCCTTAACTTAAAAACCCTAACCCTTAACTT
Found at i:698170 original size:64 final size:63
Alignment explanation
Indices: 698097--698265 Score: 207
Period size: 64 Copynumber: 2.6 Consensus size: 63
698087 CTTAACCTAA
* *
698097 TTAAATTAAAAACCCTAACCCGTTACTTAAAAACCCTAACCCTTAACTT-AAAACCCTAACCCCC
1 TTAACTTAAAAACCCTAACCCGTTACTTAAAAACCCTAACCCTTAACTTAAAAACACTAA--CCC
*
698161 TTAACTTAAAAACCCTAACCC-TTAACTTAAAAACCCTAAACCCTTAACTTAAAAACACTTACCC
1 TTAACTTAAAAACCCTAACCCGTT-ACTTAAAAACCCT-AACCCTTAACTTAAAAACACTAACCC
* ** *
698225 TTAACTTTAAAACCCTAAACTAAGTTAATTAAAAACCCTAA
1 TTAACTTAAAAACCCT-AAC-CCGTTACTTAAAAACCCTAA
698266 ACTAAGTTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
63 2 0.02
64 51 0.55
65 17 0.18
66 20 0.22
67 2 0.02
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (63 bp):
TTAACTTAAAAACCCTAACCCGTTACTTAAAAACCCTAACCCTTAACTTAAAAACACTAACCC
Found at i:701489 original size:124 final size:126
Alignment explanation
Indices: 701268--701509 Score: 371
Period size: 124 Copynumber: 1.9 Consensus size: 126
701258 CAAACATGCT
* * *
701268 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTGCA
1 ACTGTAGCAAAAGCACGTCCACAAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTGCA
**
701333 AGAAGCGATTTTATACTATTTTCCCAGAAACGTCAA-AAAAAATTATTTCTTCCATGATCG
66 AGAAGCGATTTTATACTATTTGACCAGAAACGTCAACAAAAAATTATTTCTTCCATGATCG
* *
701393 ACTGTAGCAAAAGCACGTCCACAAGGGCACGATTTT-ACAAATTCTTCTCAAATATCATCCTGCT
1 ACTGTAGCAAAAGCACGTCCACAAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTGCA
* * **
701457 AGAAGCGATTTTATATTATTTGATCAGAAACGTCAACTCAAAATTATTTCTTC
66 AGAAGCGATTTTATACTATTTGACCAGAAACGTCAACAAAAAATTATTTCTTC
701510 AAAGACCTAA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
124 58 0.55
125 47 0.45
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (126 bp):
ACTGTAGCAAAAGCACGTCCACAAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCCTGCA
AGAAGCGATTTTATACTATTTGACCAGAAACGTCAACAAAAAATTATTTCTTCCATGATCG
Found at i:703270 original size:3 final size:3
Alignment explanation
Indices: 703262--703288 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
703252 CATGGTTTAC
703262 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
703289 GTTGTTGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:703293 original size:3 final size:3
Alignment explanation
Indices: 703287--703327 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
703277 ATTATTATTA
703287 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
703328 ATTTATTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:717038 original size:51 final size:50
Alignment explanation
Indices: 716921--717107 Score: 198
Period size: 51 Copynumber: 3.7 Consensus size: 50
716911 ATCATTTGAC
* * * *
716921 ACACGTAGTAGCCTTCACATAGAACTACACACGTGATCAAACTTTTCGGT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTCTCGGT
* * *
716971 TCACGTAGTAGCCTGCATATAGTACTACGCACGTGACCAAAGCCTTCT-GGT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA--CTTCTCGGT
* * * * *
717022 ACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TCTATCGAT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACT-TCTCGGT
* *
717073 ACCCGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTG
717108 TTTATAGGAA
Statistics
Matches: 113, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
49 1 0.01
50 37 0.33
51 70 0.62
52 5 0.04
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTCTCGGT
Found at i:723524 original size:20 final size:20
Alignment explanation
Indices: 723494--723565 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
723484 TCACACTTCA
723494 ATCACATACTCATATTTGTTT
1 ATCA-ATACTCATATTTGTTT
**
723515 ATCAATACTCATA--T-TCC
1 ATCAATACTCATATTTGTTT
**
723532 ATTGA-ACTCATATTTGTTT
1 ATCAATACTCATATTTGTTT
723551 ATCAATACTCATATT
1 ATCAATACTCATATT
723566 CCATTGAACA
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
16 7 0.18
17 4 0.10
18 2 0.05
19 4 0.10
20 18 0.46
21 4 0.10
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.44
Consensus pattern (20 bp):
ATCAATACTCATATTTGTTT
Found at i:723548 original size:36 final size:36
Alignment explanation
Indices: 723501--723574 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
723491 TCAATCACAT
723501 ACTCATATTTGTTTATCAATACTCATATTCCATTGA
1 ACTCATATTTGTTTATCAATACTCATATTCCATTGA
723537 ACTCATATTTGTTTATCAATACTCATATTCCATTGA
1 ACTCATATTTGTTTATCAATACTCATATTCCATTGA
723573 AC
1 AC
723575 ACGTCGGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.20, G:0.05, T:0.43
Consensus pattern (36 bp):
ACTCATATTTGTTTATCAATACTCATATTCCATTGA
Found at i:723702 original size:50 final size:52
Alignment explanation
Indices: 723645--723783 Score: 185
Period size: 51 Copynumber: 2.7 Consensus size: 52
723635 TCATTAAATA
* * * *
723645 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAA-CTTTCTGGT-T
1 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCTAGTAT
* *
723695 CACGTAGTAGCCTGCATATAGTACTACGCACGTGACCAAAGCCTTCTAGTAT
1 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCTAGTAT
* *
723747 -ACATAGTAGCCTGCACATAGTACTACACATGTGACCA
1 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCA
723784 TTATCTATCG
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
50 36 0.47
51 40 0.52
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (52 bp):
CACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCTAGTAT
Found at i:732634 original size:51 final size:50
Alignment explanation
Indices: 732491--732785 Score: 294
Period size: 51 Copynumber: 5.8 Consensus size: 50
732481 ACTTTTATCA
*
732491 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAG-TT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* * *
732540 TTACGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGATACACATAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * * * *
732592 TTCGGTACACATAGTAGCCTTCACTTAGTAATACATATGTGACC-ATCATT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* *
732642 TATCGATTCACATAGTAGCCCTT-ACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATACACATAGTAG-CCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * * * *
732694 CTCTG-TACACATTGTAGCCTCCACTTAGTACTACACATGTGACC-ATCATT
1 TTC-GATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* *
732744 TATCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 T-TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
732786 TTCATCGATA
Statistics
Matches: 199, Mismatches: 34, Indels: 24
0.77 0.13 0.09
Matches are distributed among these distances:
49 6 0.03
50 47 0.24
51 133 0.67
52 11 0.06
53 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (50 bp):
TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
Found at i:732679 original size:102 final size:102
Alignment explanation
Indices: 732491--732785 Score: 414
Period size: 102 Copynumber: 2.9 Consensus size: 102
732481 ACTTTTATCA
* * * * *** *
732491 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTTCACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
*
732555 TAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
66 TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
* * *
732592 TTCGGTACACATAGTAGCCTTCACTTAGTAATACATATGTGACCATCATTTATCGATTCACATAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
732657 TAGCCCTT-ACACAGTACTACACACGTGACCAAAGCTT
66 TAG-CCTTCACACAGTACTACACACGTGACCAAAGCTT
* * * * *
732694 CTCTGTACACATTGTAGCCTCCACTTAGTACTACACATGTGACCATCATTTATCGATACACGTAG
1 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
732759 TAGCCTTCACACAGTACTACACACGTG
66 TAGCCTTCACACAGTACTACACACGTG
732786 TTCATCGATA
Statistics
Matches: 171, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
101 47 0.27
102 120 0.70
103 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (102 bp):
TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAG
TAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
Found at i:740252 original size:50 final size:50
Alignment explanation
Indices: 740188--740364 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
740178 TCGATACACG
* **
740188 TAGTAGCCTTCACATAGTACTACACATGTGATCAAGTTTTACGGTTCATG
1 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACA
*
740238 TAGTAGCCTTCACATAGTACTACAAACGTGATCAAGTTTTACGGTTCACA
1 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACA
* * *
740288 TAGTAGCATTCACATAGTACTACACACGTGACCAAAGCTTTT-CGGTACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGTTCACA
*
740339 TAGTAGCCTTCACTTAGTACTACACA
1 TAGTAGCCTTCACATAGTACTACACA
740365 TATAACCATC
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 76 0.66
51 35 0.30
52 4 0.03
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (50 bp):
TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACA
Found at i:740358 original size:51 final size:50
Alignment explanation
Indices: 740177--740516 Score: 274
Period size: 51 Copynumber: 6.7 Consensus size: 50
740167 ACTTTTATCA
* * * *
740177 TTCGATACACGTAGTAGCCTTCACATAGTACTACACATGTGATCAAG-TT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* ** * *
740226 TTACGGTTCATGTAGTAGCCTTCACATAGTACTACAAACGTGATCAAG-TT
1 TT-CGGTACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* *
740276 TTACGGTTCACATAGTAGCATTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGGTACACATAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* ** * *
740328 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATATAACC-ATCATT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* * * * * * * *
740378 TATTGATTCACGTAGTAGGCTTCACACAGTACTGCACACGTGACGAAAGCTT
1 T-TCGGTACACATAGTAGCCTTCACATAGTACTACACACGTGAC-CAAGCTT
* * * * * *
740430 CTCTGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACC-ATCATT
1 TTCGGTACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* * * *
740480 TATTGATACACGTAGTAGCCTTCACACAGTACTACAC
1 T-TCGGTACACATAGTAGCCTTCACATAGTACTACAC
740517 TAATGTTCAT
Statistics
Matches: 230, Mismatches: 52, Indels: 16
0.77 0.17 0.05
Matches are distributed among these distances:
49 6 0.03
50 87 0.38
51 129 0.56
52 6 0.03
53 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (50 bp):
TTCGGTACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
Found at i:740410 original size:102 final size:102
Alignment explanation
Indices: 740184--740516 Score: 393
Period size: 102 Copynumber: 3.3 Consensus size: 102
740174 TCATTCGATA
* * * * **
740184 CACGTAGTAGCCTTCACATAGTACTACACATGTGATC-AAG-TTTTACGGTTCATGTAGTAGCCT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAGTAGCCT
* * * * *** * *
740247 TCACATAGTACTACAAACGTGATCAAGTTTTA-CGGTT
65 TCACTTAGTACTACACATGTGACCATCATTTATTGATT
* * *
740284 CACATAGTAGCATTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTAGCCTT
* *
740349 CACTTAGTACTACACATATAACCATCATTTATTGATT
66 CACTTAGTACTACACATGTGACCATCATTTATTGATT
* * * * * *
740386 CACGTAGTAGGCTTCACACAGTACTGCACACGTGACGAAAGCTTCTCTGTACACATTGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTAGCCTT
*
740451 CACTTAGTACTACACATGTGACCATCATTTATTGATA
66 CACTTAGTACTACACATGTGACCATCATTTATTGATT
740488 CACGTAGTAGCCTTCACACAGTACTACAC
1 CACGTAGTAGCCTTCACACAGTACTACAC
740517 TAATGTTCAT
Statistics
Matches: 198, Mismatches: 32, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
100 33 0.17
101 41 0.21
102 124 0.63
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (102 bp):
CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGTAGCCTT
CACTTAGTACTACACATGTGACCATCATTTATTGATT
Found at i:742338 original size:20 final size:20
Alignment explanation
Indices: 742313--742381 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
742303 AGCATACTTG
742313 AACATAATTCATATGAATTT
1 AACATAATTCATATGAATTT
* *
742333 AACATAGATAACCAT-T-ACACTTG
1 AACATA-AT--TCATATGA-A-TTT
742356 AACATAATTCATATGAATTT
1 AACATAATTCATATGAATTT
742376 AACATA
1 AACATA
742382 GATAACCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 17 0.45
21 5 0.13
22 5 0.13
23 11 0.29
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.33
Consensus pattern (20 bp):
AACATAATTCATATGAATTT
Found at i:742359 original size:23 final size:23
Alignment explanation
Indices: 742333--742404 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
742323 ATATGAATTT
742333 AACATAGATAACCATTACACTTG
1 AACATAGATAACCATTACACTTG
* *
742356 AACATA-AT--TCATATGA-A-TTT
1 AACATAGATAACCAT-T-ACACTTG
742376 AACATAGATAACCATTACACTTG
1 AACATAGATAACCATTACACTTG
742399 AACATA
1 AACATA
742405 ATTCAATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 11 0.29
21 5 0.13
22 5 0.13
23 17 0.45
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (23 bp):
AACATAGATAACCATTACACTTG
Found at i:742419 original size:43 final size:43
Alignment explanation
Indices: 742308--742409 Score: 204
Period size: 43 Copynumber: 2.4 Consensus size: 43
742298 ATGTTAGCAT
742308 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
1 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
742351 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
1 ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
742394 ACTTGAACATAATTCA
1 ACTTGAACATAATTCA
742410 ATTTGATTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (43 bp):
ACTTGAACATAATTCATATGAATTTAACATAGATAACCATTAC
Found at i:745825 original size:27 final size:27
Alignment explanation
Indices: 745787--745842 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
745777 ATACTTCAAT
*
745787 TTGGTCATTTTTAATATATTTTTTGAA
1 TTGGTCATTTTTAATATACTTTTTGAA
*
745814 TTGGTCCA-TTTTAATTTACTTTTTGAA
1 TTGGT-CATTTTTAATATACTTTTTGAA
745841 TT
1 TT
745843 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.23, C:0.07, G:0.11, T:0.59
Consensus pattern (27 bp):
TTGGTCATTTTTAATATACTTTTTGAA
Found at i:749180 original size:1 final size:1
Alignment explanation
Indices: 749174--749212 Score: 78
Period size: 1 Copynumber: 39.0 Consensus size: 1
749164 AGCCAATTGG
749174 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
749213 GCATCATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:751386 original size:30 final size:31
Alignment explanation
Indices: 751325--751386 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
751315 TTAGGTAGGA
* ** *
751325 TGGGAGGGAAGTAAAAGTTTTGGGGGGAAAG
1 TGGGAGGGAAGTAAAAGTATTGAAGGAAAAG
751356 TGGGAGGG-AGTAAAAGTATTGAAGGAAAAG
1 TGGGAGGGAAGTAAAAGTATTGAAGGAAAAG
751386 T
1 T
751387 AAAAAGACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.44, T:0.19
Consensus pattern (31 bp):
TGGGAGGGAAGTAAAAGTATTGAAGGAAAAG
Found at i:751539 original size:18 final size:18
Alignment explanation
Indices: 751513--751547 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
751503 ATTTGAGTTG
* *
751513 ACTCGAATAATTCGATTA
1 ACTCAAATAACTCGATTA
751531 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
751548 CATTTTAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:751558 original size:15 final size:15
Alignment explanation
Indices: 751538--751612 Score: 58
Period size: 15 Copynumber: 5.5 Consensus size: 15
751528 TTAACTCAAA
*
751538 TAACTCGATTCATTT
1 TAACTCGATTCAGTT
751553 TAACTCGATTC-GTT
1 TAACTCGATTCAGTT
**
751567 T-A----ATTCAAAT
1 TAACTCGATTCAGTT
*
751577 -AACTCGATTCATTT
1 TAACTCGATTCAGTT
751591 TAACTCGATTC-GTT
1 TAACTCGATTCAGTT
751605 TAACTCGA
1 TAACTCGA
751613 ATTTTTTTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 15
0.69 0.09 0.22
Matches are distributed among these distances:
9 4 0.09
10 2 0.04
13 1 0.02
14 19 0.40
15 21 0.45
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.41
Consensus pattern (15 bp):
TAACTCGATTCAGTT
Found at i:751575 original size:38 final size:38
Alignment explanation
Indices: 751522--751610 Score: 160
Period size: 38 Copynumber: 2.3 Consensus size: 38
751512 GACTCGAATA
*
751522 ATTCGATTAACTCAAATAACTCGATTCATTTTAACTCG
1 ATTCGTTTAACTCAAATAACTCGATTCATTTTAACTCG
*
751560 ATTCGTTTAATTCAAATAACTCGATTCATTTTAACTCG
1 ATTCGTTTAACTCAAATAACTCGATTCATTTTAACTCG
751598 ATTCGTTTAACTC
1 ATTCGTTTAACTC
751611 GAATTTTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.40
Consensus pattern (38 bp):
ATTCGTTTAACTCAAATAACTCGATTCATTTTAACTCG
Found at i:757120 original size:24 final size:24
Alignment explanation
Indices: 757093--757144 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
757083 GAGTGTGAGA
*
757093 GAAA-AGAAAAAAAAGATTGAGAAT
1 GAAAGAGAAAAAAAA-ATTGAAAAT
**
757117 GAAAGAGAAATTAAAATTGAAAAT
1 GAAAGAGAAAAAAAAATTGAAAAT
757141 GAAA
1 GAAA
757145 TTGAGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.15
Consensus pattern (24 bp):
GAAAGAGAAAAAAAAATTGAAAAT
Found at i:771884 original size:20 final size:20
Alignment explanation
Indices: 771837--771885 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
771827 AAAATTCATC
771837 TAAAAATAATGACAAAATAT
1 TAAAAATAATGACAAAATAT
* * ** *
771857 TCAGAATAATTTCAAAATTT
1 TAAAAATAATGACAAAATAT
771877 TAAAAATAA
1 TAAAAATAA
771886 AATTATTTTT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (20 bp):
TAAAAATAATGACAAAATAT
Found at i:773350 original size:17 final size:17
Alignment explanation
Indices: 773297--773351 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
773287 AAATAAATTC
773297 AATTAAGTTTCTCCATT
1 AATTAAGTTTCTCCATT
*** * *
773314 AATTTTTTTTGT-CTTT
1 AATTAAGTTTCTCCATT
773330 AATTAAGTTTCTCCATT
1 AATTAAGTTTCTCCATT
773347 AATTA
1 AATTA
773352 TTAAAATCAA
Statistics
Matches: 27, Mismatches: 10, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.27, C:0.13, G:0.05, T:0.55
Consensus pattern (17 bp):
AATTAAGTTTCTCCATT
Found at i:773518 original size:18 final size:18
Alignment explanation
Indices: 773490--773533 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
773480 ACTAAAAGTT
773490 TATAT-AAACTTATAAAAA
1 TATATAAAACTTA-AAAAA
773508 -ATATAAAACTTAAAAAA
1 TATATAAAACTTAAAAAA
773525 TATATAAAA
1 TATATAAAA
773534 TATTCATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
TATATAAAACTTAAAAAA
Found at i:775317 original size:3 final size:3
Alignment explanation
Indices: 775309--775372 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
775299 CTCAACATTC
775309 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
775357 TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT T
775373 TATTAAAGAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:776273 original size:25 final size:25
Alignment explanation
Indices: 776245--776364 Score: 116
Period size: 25 Copynumber: 4.8 Consensus size: 25
776235 GAAAACTCTT
* *
776245 TGTAACGCCTTTATGGCGAATATTC
1 TGTAAAGCCTTTGTGGCGAATATTC
* *
776270 TGTAAAACCTTTGTGGCGAACT-CTC
1 TGTAAAGCCTTTGTGGCGAA-TATTC
* * *
776295 TATAAGGCCTTTGTGGCGAATATTT
1 TGTAAAGCCTTTGTGGCGAATATTC
** * * *
776320 TGTAAATACTTTTTGGTGAATATTT
1 TGTAAAGCCTTTGTGGCGAATATTC
776345 TGTAAAGCCTTTGTGGCGAA
1 TGTAAAGCCTTTGTGGCGAA
776365 CTCTCTATAA
Statistics
Matches: 74, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
24 1 0.01
25 72 0.97
26 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (25 bp):
TGTAAAGCCTTTGTGGCGAATATTC
Found at i:776355 original size:50 final size:50
Alignment explanation
Indices: 776238--776364 Score: 141
Period size: 50 Copynumber: 2.5 Consensus size: 50
776228 CTTTATGGAA
* *
776238 AACTCTTTGTAACGCCTTTATGGCGAATATTCTGTAAAACCTTTGTGGCG
1 AACTCTTTGTAAAGCCTTTGTGGCGAATATTCTGTAAAACCTTTGTGGCG
* * * * * *
776288 AACTCTCTATAAGGCCTTTGTGGCGAATATTTTGTAAATA-CTTTTTGGTG
1 AACTCTTTGTAAAGCCTTTGTGGCGAATATTCTGTAAA-ACCTTTGTGGCG
*
776338 AA-TATTTTGTAAAGCCTTTGTGGCGAA
1 AACT-CTTTGTAAAGCCTTTGTGGCGAA
776365 CTCTCTATAA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.02
50 62 0.97
51 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (50 bp):
AACTCTTTGTAAAGCCTTTGTGGCGAATATTCTGTAAAACCTTTGTGGCG
Found at i:801973 original size:24 final size:24
Alignment explanation
Indices: 801944--802028 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
801934 TTATCTGTTT
* *
801944 TGGACAGCATTCATATGCTCAAAC
1 TGGACAGCATTAATATGCTCAAAA
* *
801968 TTGACATCATTAATATGCTCAAAA
1 TGGACAGCATTAATATGCTCAAAA
*
801992 TGGACAGCATTAATATTCTCAAAA
1 TGGACAGCATTAATATGCTCAAAA
*
802016 TGGATAGCATTAA
1 TGGACAGCATTAA
802029 AACATGTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (24 bp):
TGGACAGCATTAATATGCTCAAAA
Found at i:802831 original size:41 final size:41
Alignment explanation
Indices: 802785--802898 Score: 192
Period size: 41 Copynumber: 2.8 Consensus size: 41
802775 TGCCAATCAT
*
802785 ATAGCCGAAGCTATTATAATTCTGCACACTAAGTGCCTTAC
1 ATAGCCGAAGCTATTATAATTCCGCACACTAAGTGCCTTAC
*
802826 CTAGCCGAAGCTATTATAATTCCGCACACTAAGTGCCTTAC
1 ATAGCCGAAGCTATTATAATTCCGCACACTAAGTGCCTTAC
* *
802867 ATAGCCGAAGCTATTATAATTTCACACACTAA
1 ATAGCCGAAGCTATTATAATTCCGCACACTAA
802899 CACTACACCA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (41 bp):
ATAGCCGAAGCTATTATAATTCCGCACACTAAGTGCCTTAC
Found at i:803197 original size:114 final size:114
Alignment explanation
Indices: 802998--803257 Score: 371
Period size: 114 Copynumber: 2.3 Consensus size: 114
802988 AAAAAAAGCA
* * * *
802998 TTAGCGGCGTTTTTGAGAAAGCGCCTC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAACTT
* ** * *
803062 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGTTCGGGGTT
66 TCAGGGATTTAGCGGCGTTTTT-AGTAAAGCGCCGCTAATGCCCAGGGCT
*
803111 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAACTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAACTT
* *
803176 TTAGGGATTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGCCCAGGGCT
66 TCAGGGATTTAGCGGCGTTTTTAGTAAAGCGCCGCTAATGCCCAGGGCT
* *
803225 TTAGCGGCGTTTTTGGAAAAACGCCGCAAAAAA
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAA
803258 TAAATCAACT
Statistics
Matches: 130, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
113 25 0.19
114 105 0.81
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAACTT
TCAGGGATTTAGCGGCGTTTTTAGTAAAGCGCCGCTAATGCCCAGGGCT
Found at i:803397 original size:145 final size:145
Alignment explanation
Indices: 803241--804279 Score: 1919
Period size: 145 Copynumber: 7.3 Consensus size: 145
803231 GCGTTTTTGG
*
803241 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATTTTAGAACAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
803306 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
803371 AGCGGCGTTTCCTAT
131 AGCGGCGTTTCCTAT
803386 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
803451 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
803516 AGCGGCGTTTCCTAT
131 AGCGGCGTTTCCTAT
803531 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
803596 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
803661 AGCGGCGTTTCCTAT
131 AGCGGCGTTTCCTAT
803676 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
803741 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
803806 AGCGGCGTTTCCTAT
131 AGCGGCGTTTCCTAT
803821 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
803886 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
803951 AGCGGCGTTTCCTAT
131 AGCGGCGTTTCCTAT
803966 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
804031 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
804096 AGCGGCGTTTCCTAT
131 AGCGGCGTTTCCTAT
*
804111 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAAAAAAT-TTAGAATAGCAAAACGG
1 AAAAACGCCGCAAAAAATAAATCAACTTAT-AAAAAAT-AAAAAAATGTTAGAACAGCAAAACGG
804175 CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGC--T-T-----------CTAAAGGTAAGCA
64 CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
*
804226 ATTGCGGCGTTTCCTAT
129 ATAGCGGCGTTTCCTAT
*
804243 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAT
1 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAT
804280 TTCCCAAAAT
Statistics
Matches: 888, Mismatches: 4, Indels: 18
0.98 0.00 0.02
Matches are distributed among these distances:
131 7 0.01
132 58 0.07
143 1 0.00
144 1 0.00
145 754 0.85
146 59 0.07
147 8 0.01
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (145 bp):
AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAATAAAAAAATGTTAGAACAGCAAAACGGCG
TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
AGCGGCGTTTCCTAT
Found at i:804591 original size:14 final size:15
Alignment explanation
Indices: 804563--804595 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
804553 AAGTTTTATA
804563 GATTATGGAATTAGG
1 GATTATGGAATTAGG
804578 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
804592 GATT
1 GATT
804596 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:804797 original size:28 final size:28
Alignment explanation
Indices: 804749--804819 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
804739 ATATATTAAA
*
804749 TAAGGTTTAGGGGTTAGGGGTTAGGGGT
1 TAAGGGTTAGGGGTTAGGGGTTAGGGGT
*
804777 TAAGGGTTAGGGATTTA-GGGTTAGGGGT
1 TAAGGGTTAGGG-GTTAGGGGTTAGGGGT
*
804805 T-A-GGTTATGGGTTAG
1 TAAGGGTTAGGGGTTAG
804820 ATGTTAAGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
25 3 0.08
26 7 0.19
27 1 0.03
28 23 0.62
29 3 0.08
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (28 bp):
TAAGGGTTAGGGGTTAGGGGTTAGGGGT
Found at i:804816 original size:12 final size:12
Alignment explanation
Indices: 804755--804819 Score: 58
Period size: 14 Copynumber: 4.9 Consensus size: 12
804745 TAAATAAGGT
804755 TTAGGGGTTAGGGG
1 TTAGGGGTTA--GG
804769 TTAGGGGTTAAGGG
1 TTAGGGGTT-A-GG
*
804783 TTAGGGATTTAGGG
1 TTAGGG-GTTA-GG
804797 TTAGGGGTTAGG
1 TTAGGGGTTAGG
*
804809 TTATGGGTTAG
1 TTAGGGGTTAG
804820 ATGTTAAGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
12 12 0.26
13 3 0.07
14 28 0.61
15 3 0.07
ACGTcount: A:0.18, C:0.00, G:0.48, T:0.34
Consensus pattern (12 bp):
TTAGGGGTTAGG
Found at i:804818 original size:7 final size:7
Alignment explanation
Indices: 804755--804808 Score: 74
Period size: 7 Copynumber: 7.7 Consensus size: 7
804745 TAAATAAGGT
804755 TTAGGGG
1 TTAGGGG
804762 TTAGGGG
1 TTAGGGG
804769 TTAGGGG
1 TTAGGGG
*
804776 TTAAGGG
1 TTAGGGG
*
804783 TTAGGGAT
1 TTAGGG-G
804791 TTA-GGG
1 TTAGGGG
804797 TTAGGGG
1 TTAGGGG
804804 TTAGG
1 TTAGG
804809 TTATGGGTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 3 0.07
7 35 0.85
8 3 0.07
ACGTcount: A:0.19, C:0.00, G:0.50, T:0.31
Consensus pattern (7 bp):
TTAGGGG
Found at i:804826 original size:165 final size:166
Alignment explanation
Indices: 804624--804943 Score: 588
Period size: 165 Copynumber: 1.9 Consensus size: 166
804614 TGATTTAAGG
804624 TTTATGGGTTAAGGGTTAGGTTAGGGGTTAGATGTTAAGAGTTAGGGATTTAGGGTTTATAAAAT
1 TTTATGGGTTAAGGGTTAGGTTAGGGGTTAGATGTTAAGAGTTAGGGATTTAGGGTTTATAAAAT
*
804689 CAGTGTTAGGTTAGAGTTTAGGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAGG
66 CAGTGTTAGGTTAGAGTTTAGGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAG
* *
804754 TTTAGGGGTTAGGGGTTAGGGGTTAAGGGTTAGGGA
131 TTTAGGGATTAGGGGTTAAGGGTTAAGGGTTAGGGA
* *
804790 TTTA-GGGTTAGGGGTTAGGTTATGGGTTAGATGTTAAGAGTTAGGGATTTAGGGTTTATAAAAT
1 TTTATGGGTTAAGGGTTAGGTTAGGGGTTAGATGTTAAGAGTTAGGGATTTAGGGTTTATAAAAT
804854 CAGTGTTAGGTTAGAGTTTAGGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAG
66 CAGTGTTAGGTTAGAGTTTAGGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAG
804919 TTTAGGGATTAGGGGTTAAGGGTTA
131 TTTAGGGATTAGGGGTTAAGGGTTA
804944 GGGATCGGGT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
165 145 0.97
166 4 0.03
ACGTcount: A:0.29, C:0.01, G:0.31, T:0.39
Consensus pattern (166 bp):
TTTATGGGTTAAGGGTTAGGTTAGGGGTTAGATGTTAAGAGTTAGGGATTTAGGGTTTATAAAAT
CAGTGTTAGGTTAGAGTTTAGGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAG
TTTAGGGATTAGGGGTTAAGGGTTAAGGGTTAGGGA
Found at i:805050 original size:76 final size:76
Alignment explanation
Indices: 804957--805163 Score: 290
Period size: 76 Copynumber: 2.6 Consensus size: 76
804947 ATCGGGTTAT
*
804957 GGTTTAGGGTTTAGATTAATTAGTATTTTTTAAGTTATATATTAAATAAAATTTAGGGGTTAGGG
1 GGTTTAGGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAAATTTAGGGGTTAGGG
805022 ATTTGGGGTCG
66 ATTTGGGGTCG
* * * *
805033 GGTTTAAGGTTTAGATTAATTAGTGTTTTTTAATTTTTATATTAAATAAAGTTTAGGGGTTAGGG
1 GGTTTAGGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAAATTTAGGGGTTAGGG
805098 ATTTGGGGTCG
66 ATTTGGGGTCG
*
805109 GG-TTAGGGTTTAAGATTTGAATTAATTAGTACTTTTTAATTTATATATTAAATAA
1 GGTTTAGGGTTT---A---G-ATTAATTAGTATTTTTTAATTTATATATTAAATAA
805164 GATTAATTAG
Statistics
Matches: 115, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
75 8 0.07
76 73 0.63
78 1 0.01
81 1 0.01
82 32 0.28
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.45
Consensus pattern (76 bp):
GGTTTAGGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATAAAATTTAGGGGTTAGGG
ATTTGGGGTCG
Found at i:805093 original size:158 final size:160
Alignment explanation
Indices: 804869--805163 Score: 393
Period size: 158 Copynumber: 1.8 Consensus size: 160
804859 TTAGGTTAGA
*
804869 GTTTAGGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAGTTTAGGGATTAGGGG
1 GTTTAAGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAG-TT---G-TTAGGGG
* * * *
804934 TTAAGGG-TTAGGGATCGGGTTATGGTTTAGGGTTT-AGATTAATTAGTATTTTTTAAGTTATAT
61 TT-AGGGATTAGGGATCGGGTTAGGGTTTAAGATTTGA-ATTAATTAGTACTTTTTAAGTTATAT
804997 ATTAAATAAAATTTAGGGGTTAGGGATTTGGGGTCGG
124 ATTAAATAAAATTTAGGGGTTAGGGATTTGGGGTCGG
* *
805034 GTTTAAGG-TTTAGATTAATTAGTGTTTTTTAATTTTTATATTAAATAAAG-T-TTAGGGGTTAG
1 GTTTAAGGATTTAGATTAATTAGTGTATTTTAA-TTATATATTAAATAAAGTTGTTAGGGGTTAG
* * *
805096 GGATTTGGGGTCGGGTTAGGGTTTAAGATTTGAATTAATTAGTACTTTTTAATTTATATATTAAA
65 GGATTAGGGATCGGGTTAGGGTTTAAGATTTGAATTAATTAGTACTTTTTAAGTTATATATTAAA
805161 TAA
130 TAA
805164 GATTAATTAG
Statistics
Matches: 117, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
157 4 0.03
158 65 0.56
159 1 0.01
163 1 0.01
164 23 0.20
165 23 0.20
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.44
Consensus pattern (160 bp):
GTTTAAGGATTTAGATTAATTAGTGTATTTTAATTATATATTAAATAAAGTTGTTAGGGGTTAGG
GATTAGGGATCGGGTTAGGGTTTAAGATTTGAATTAATTAGTACTTTTTAAGTTATATATTAAAT
AAAATTTAGGGGTTAGGGATTTGGGGTCGG
Found at i:805158 original size:82 final size:80
Alignment explanation
Indices: 804927--805163 Score: 288
Period size: 76 Copynumber: 3.0 Consensus size: 80
804917 AGTTTAGGGA
* * * * * *
804927 TTAGGGGTTAAGGG-TTAGGGATCGGGTTATGGTTTAGGGTTTAGATTAATTAGTATTTTTTAAG
1 TTAGGGGTT-AGGGATTTGGGGTCGGGTTAAGGTTTAAGATTTA-ATTAATTAGTA-TTTTTAAT
804991 TTATATATTAAATAAAAT
63 TTATATATTAAATAAAAT
*
805009 TTAGGGGTTAGGGATTTGGGGTCGGGTTTAAGGTTT-AGA-TTAATT-AGT-GT-TTTTTAATTT
1 TTAGGGGTTAGGGATTTGGGGTCGGG-TTAAGGTTTAAGATTTAATTAATTAGTATTTTTAATTT
* *
805069 TTATATTAAATAAAGT
65 ATATATTAAATAAAAT
*
805085 TTAGGGGTTAGGGATTTGGGGTCGGGTTAGGGTTTAAGATTTGAATTAATTAGTACTTTTTAATT
1 TTAGGGGTTAGGGATTTGGGGTCGGGTTAAGGTTTAAGATTT-AATTAATTAGTA-TTTTTAATT
805150 TATATATTAAATAA
64 TATATATTAAATAA
805164 GATTAATTAG
Statistics
Matches: 134, Mismatches: 12, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
75 8 0.06
76 52 0.39
77 2 0.01
78 6 0.04
79 4 0.03
80 5 0.04
81 7 0.05
82 42 0.31
83 8 0.06
ACGTcount: A:0.29, C:0.02, G:0.26, T:0.44
Consensus pattern (80 bp):
TTAGGGGTTAGGGATTTGGGGTCGGGTTAAGGTTTAAGATTTAATTAATTAGTATTTTTAATTTA
TATATTAAATAAAAT
Found at i:805176 original size:36 final size:37
Alignment explanation
Indices: 805129--805201 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
805119 TAAGATTTGA
* *
805129 ATTAATTAGTACTT-TTTAATTTATATATTAAATAAG
1 ATTAATTAGTACTTATTTAATTAACATATTAAATAAG
805165 ATTAATTAGTACTTATTTAATTAACATATTAAATAAG
1 ATTAATTAGTACTTATTTAATTAACATATTAAATAAG
805202 TTCTTTATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 14 0.41
37 20 0.59
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (37 bp):
ATTAATTAGTACTTATTTAATTAACATATTAAATAAG
Found at i:805302 original size:21 final size:21
Alignment explanation
Indices: 805249--805302 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
805239 TAAAGATTAT
805249 TAATTTAAAA-TTGATATGCAA
1 TAATTTAAAATTTGATAT-CAA
*
805270 T-ATATAATAATTTGAATAT-AA
1 TAATTTAA-AATTTG-ATATCAA
805291 TAATTTAAAATT
1 TAATTTAAAATT
805303 ATAAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 8 0.30
23 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATTTAAAATTTGATATCAA
Found at i:805311 original size:9 final size:9
Alignment explanation
Indices: 805297--805357 Score: 58
Period size: 9 Copynumber: 7.1 Consensus size: 9
805287 ATAATAATTT
805297 AAAATTATA
1 AAAATTATA
*
805306 AAAATTGT-
1 AAAATTATA
*
805314 AAAATTGTAA
1 AAAATTAT-A
*
805324 AAAATTGTA
1 AAAATTATA
805333 AAAATTATA
1 AAAATTATA
805342 AAAA--AT-
1 AAAATTATA
805348 AAAATTATA
1 AAAATTATA
805357 A
1 A
805358 TTTGAATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
6 4 0.09
7 2 0.04
8 10 0.22
9 21 0.47
10 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (9 bp):
AAAATTATA
Found at i:805336 original size:19 final size:18
Alignment explanation
Indices: 805292--805347 Score: 80
Period size: 19 Copynumber: 3.2 Consensus size: 18
805282 TGAATATAAT
805292 AATT-TAAAATTAT-AAA
1 AATTGTAAAATTATAAAA
*
805308 AATTGTAAAATTGTAAAA
1 AATTGTAAAATTATAAAA
805326 AATTGTAAAAATTATAAAA
1 AATTGT-AAAATTATAAAA
805345 AAT
1 AAT
805348 AAAATTATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
16 4 0.11
17 8 0.23
18 9 0.26
19 14 0.40
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (18 bp):
AATTGTAAAATTATAAAA
Found at i:805347 original size:10 final size:9
Alignment explanation
Indices: 805297--805345 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
805287 ATAATAATTT
*
805297 AAAATTATA
1 AAAATTGTA
805306 AAAATTGT-
1 AAAATTGTA
805314 AAAATTGTAA
1 AAAATTGT-A
805324 AAAATTGTA
1 AAAATTGTA
*
805333 AAAATTATA
1 AAAATTGTA
805342 AAAA
1 AAAA
805346 ATAAAATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
8 8 0.22
9 20 0.56
10 8 0.22
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (9 bp):
AAAATTGTA
Found at i:809447 original size:22 final size:22
Alignment explanation
Indices: 809419--809461 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
809409 TAGTGGCGCT
*
809419 AAAAAGCACCGCTAAAGGCCTA
1 AAAAAGCACCGCTAAAAGCCTA
*
809441 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCACCGCTAAAAGCCT
809462 GCTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.28, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAGCCTA
Found at i:812383 original size:26 final size:26
Alignment explanation
Indices: 812347--812401 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
812337 ATCCTATTGT
812347 CATGATTTTTTAAATGGTGTTAAAAA
1 CATGATTTTTTAAATGGTGTTAAAAA
*
812373 CATGATTTTTTAAATGGTGTTAAAGA
1 CATGATTTTTTAAATGGTGTTAAAAA
812399 CAT
1 CAT
812402 TTCTTGTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.42
Consensus pattern (26 bp):
CATGATTTTTTAAATGGTGTTAAAAA
Found at i:812781 original size:41 final size:41
Alignment explanation
Indices: 812724--812964 Score: 342
Period size: 41 Copynumber: 5.9 Consensus size: 41
812714 GAGTTTTTGG
* * *
812724 GGCCTTTAGCGACGTTTTTGAAAAATCGCCGCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * *
812765 GGCCTTTAACGGCGTTTTTGAAAAAGCGTCGCTAGTGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
*
812806 GGCCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
*
812847 GGCCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
**
812888 TTCCTTTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATGCTC-
1 GGCCTTTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTCT
* *
812928 GACCTTTAGTGGCGTTTTTTGAAAAAGCGCCGCTAAT
1 GGCCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAAT
812965 AATAATAAAA
Statistics
Matches: 179, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 14 0.08
41 162 0.91
42 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
Found at i:814493 original size:107 final size:106
Alignment explanation
Indices: 814344--814555 Score: 370
Period size: 107 Copynumber: 2.0 Consensus size: 106
814334 ATGTATTAGA
* * *
814344 AATTTTCAAAACGGTGTCGTTTCATTATAAGAATTTAATTTATTAGTGGCGTTTCTTCTGTAAAC
1 AATTTTCAAAACGGTGTCATTTCATCACAAGAATTTAATTTATTAGTGGCGTTTCTTCTGTAAAC
814409 GCCGGAAAAGGTAACATTAGCGGTGTTTATGACTAAAAAAG
66 GCCGGAAAAGGTAACATTAGCGGTGTTTATGACTAAAAAAG
814450 AATTTTCCAAAACGGTGTCATTTCATCACAAGAATTTAATTTATTAGTGGCGTTTCTTCTGTAAA
1 AATTTT-CAAAACGGTGTCATTTCATCACAAGAATTTAATTTATTAGTGGCGTTTCTTCTGTAAA
* *
814515 CTCCGGAAAAGGTAATATTAGCGGTGTTTATGACTAAAAAA
65 CGCCGGAAAAGGTAACATTAGCGGTGTTTATGACTAAAAAA
814556 TATTTAATCT
Statistics
Matches: 100, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
106 6 0.06
107 94 0.94
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.35
Consensus pattern (106 bp):
AATTTTCAAAACGGTGTCATTTCATCACAAGAATTTAATTTATTAGTGGCGTTTCTTCTGTAAAC
GCCGGAAAAGGTAACATTAGCGGTGTTTATGACTAAAAAAG
Found at i:814906 original size:16 final size:15
Alignment explanation
Indices: 814881--814915 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
814871 CGCCATTTAT
*
814881 AAATTTTCCCCCCTG
1 AAATTTTCCCCCCTA
814896 AAATATTTCCCCCCTA
1 AAAT-TTTCCCCCCTA
814912 AAAT
1 AAAT
814916 CCCTAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.31, C:0.34, G:0.03, T:0.31
Consensus pattern (15 bp):
AAATTTTCCCCCCTA
Found at i:819620 original size:43 final size:43
Alignment explanation
Indices: 819549--819858 Score: 489
Period size: 43 Copynumber: 7.3 Consensus size: 43
819539 ATGGCACTTT
** * *
819549 TAGCGGCGTTTGTGAAAAAAACGTCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
*
819592 TAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
*
819635 TAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCC-GATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
*
819677 TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
819720 TAGCGGTGTTTGTGGAAAAAGTGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
819763 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
819806 TAGCGGCGTTTTTGGG-AAAGCGCCGCTAAAGATCCTGATCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
819848 TAGCGGCGTTT
1 TAGCGGCGTTT
819859 ATTTCTAAAA
Statistics
Matches: 249, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
42 75 0.30
43 174 0.70
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
Found at i:819696 original size:85 final size:86
Alignment explanation
Indices: 819549--819858 Score: 489
Period size: 85 Copynumber: 3.6 Consensus size: 86
819539 ATGGCACTTT
* * * *
819549 TAGCGGCGTTTGTGAAAAAAACGTCGCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
819614 GCCGCTAAAGGTCCTGATCTA
66 GCCGCTAAAGGTCCTGATCTA
* *
819635 TAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCC-GATCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
*
819699 GCAGCTAAAGGTCCTGATCTA
66 GCCGCTAAAGGTCCTGATCTA
* *
819720 TAGCGGTGTTTGTGGAAAAAGTGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
819785 GCCGCTAAAGGTCCTGATCTA
66 GCCGCTAAAGGTCCTGATCTA
* * * *
819806 TAGCGGCGTTTTTGG-GAAAGCGCCGCTAAAGATCCTGATCTTTAGCGGCGTTT
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTT
819859 ATTTCTAAAA
Statistics
Matches: 207, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
85 115 0.56
86 92 0.44
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (86 bp):
TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
GCCGCTAAAGGTCCTGATCTA
Found at i:819777 original size:128 final size:128
Alignment explanation
Indices: 819549--819858 Score: 489
Period size: 128 Copynumber: 2.4 Consensus size: 128
819539 ATGGCACTTT
** * *
819549 TAGCGGCGTTTGTGAAAAAAACGTCGCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCG-CGCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGAAAAAGC
*
819614 GCCGCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCC-GATCTA
65 GCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
*
819677 TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGAAAAAGT
1 TAGCGGCGTTTGTGGGAAAAGCGC-GCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGAAAAAGC
819742 GCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
65 GCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * * *
819806 TAGCGGCGTTTTTGGG-AAAGCGCCGCTAAAGATCCTGATCTTTAGCGGCGTTT
1 TAGCGGCGTTTGTGGGAAAAGCG-CGCTAAAGGTCCTGATCTATAGCGGTGTTT
819859 ATTTCTAAAA
Statistics
Matches: 169, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
127 1 0.01
128 146 0.86
129 22 0.13
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (128 bp):
TAGCGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCCTGATCTATAGCGGTGTTTGTGGAAAAAGCG
CCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
Found at i:822969 original size:27 final size:26
Alignment explanation
Indices: 822925--822979 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
822915 ATAAGGGTGG
* *
822925 TCCTTAAGAGTGTGCCACGAAGGCAT
1 TCCTTAAGAGTGTGCCACCAAGGAAT
* *
822951 TCCTTACAGAGTTTTCCACCAAGGAAT
1 TCCTTA-AGAGTGTGCCACCAAGGAAT
822978 TC
1 TC
822980 TTTCATGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TCCTTAAGAGTGTGCCACCAAGGAAT
Found at i:825406 original size:54 final size:54
Alignment explanation
Indices: 825346--825613 Score: 297
Period size: 54 Copynumber: 5.0 Consensus size: 54
825336 TACCGAACCG
* * *
825346 TGTGTCAAACTATGTAACTCACTGACTTGGTCCACACGCCCGTGTCTTAACCCA
1 TGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAACCCA
* * *
825400 TGTGTCATACCGTGTAACTCACTGACTTGGTCGACACGCCCGTGTCTCAACCCA
1 TGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAACCCA
* * * *
825454 TGTGCCAGA-TCGTGCAACTCACTGACTTGGTCCACATGCCTGTGTCTCAACCCA
1 TGTGTCAGACT-GTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAACCCA
* * * * * * * * **
825508 TGTGCCAGACCGTGTAACTCATTGAATTGGTCAATACGCCTGTGTCCCAACCTG
1 TGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAACCCA
* **
825562 TGTGTCAGA-TCGTGTAACTCACTGACTTGGTCTACACGCTTGTGTCTCAACC
1 TGTGTCAGACT-GTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAACC
825614 AGTTTGAGAC
Statistics
Matches: 181, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
54 181 1.00
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (54 bp):
TGTGTCAGACTGTGTAACTCACTGACTTGGTCCACACGCCCGTGTCTCAACCCA
Found at i:825553 original size:108 final size:108
Alignment explanation
Indices: 825361--825613 Score: 353
Period size: 108 Copynumber: 2.3 Consensus size: 108
825351 CAAACTATGT
* * * * *
825361 AACTCACTGACTTGGTCCACACGCCCGTGTCTTAACCCATGTGTCATACCGTGTAACTCACTGAC
1 AACTCACTGACTTGGTCCACACGCCTGTGTCTCAACCCATGTGCCAGACCGTGTAACTCACTGAA
* *
825426 TTGGTCGACACGCCCGTGTCTCAACCCATGTGCCAGATCGTGC
66 TTGGTCAACACGCCCGTGTCCCAACCCATGTGCCAGATCGTGC
* *
825469 AACTCACTGACTTGGTCCACATGCCTGTGTCTCAACCCATGTGCCAGACCGTGTAACTCATTGAA
1 AACTCACTGACTTGGTCCACACGCCTGTGTCTCAACCCATGTGCCAGACCGTGTAACTCACTGAA
* * ** * *
825534 TTGGTCAATACGCCTGTGTCCCAACCTGTGTGTCAGATCGTGT
66 TTGGTCAACACGCCCGTGTCCCAACCCATGTGCCAGATCGTGC
* *
825577 AACTCACTGACTTGGTCTACACGCTTGTGTCTCAACC
1 AACTCACTGACTTGGTCCACACGCCTGTGTCTCAACC
825614 AGTTTGAGAC
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 127 1.00
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (108 bp):
AACTCACTGACTTGGTCCACACGCCTGTGTCTCAACCCATGTGCCAGACCGTGTAACTCACTGAA
TTGGTCAACACGCCCGTGTCCCAACCCATGTGCCAGATCGTGC
Found at i:826837 original size:11 final size:12
Alignment explanation
Indices: 826811--826843 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
826801 AAGTATCATC
*
826811 TTTTTCTTTAAT
1 TTTTTATTTAAT
826823 TTTTTATTTAA-
1 TTTTTATTTAAT
826834 TTTTTATTTA
1 TTTTTATTTA
826844 TATACCTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTATTTAAT
Found at i:831481 original size:2 final size:2
Alignment explanation
Indices: 831474--831502 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
831464 AATTGGAATT
831474 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
831503 CATACATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:832273 original size:41 final size:41
Alignment explanation
Indices: 832131--832267 Score: 256
Period size: 41 Copynumber: 3.3 Consensus size: 41
832121 GCTCTGTGCT
832131 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
832172 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
* *
832213 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
832254 TAGCAGGCTTAATG
1 TAGCAGGCTTAATG
832268 TCGGTGTTCT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 94 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
Found at i:832290 original size:41 final size:40
Alignment explanation
Indices: 832131--832316 Score: 230
Period size: 41 Copynumber: 4.5 Consensus size: 40
832121 GCTCTGTGCT
*
832131 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCGGTGAAATAA-TCAGACTTTACGTC
*
832172 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCGGTGAAATAA-TCAGACTTTACGTC
*
832213 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCGGTGAAATA-ATCAGACTTTACGTC
* *** * * *
832254 TAGCAGGCTTAATGTCGGTGTTCTGAATCAGGCTTTAAGCC
1 TAGCAGGCTTAATGCCGGTGAAAT-AATCAGACTTTACGTC
832295 TAGCAGGC-TATATGCCGGTGAA
1 TAGCAGGCTTA-ATGCCGGTGAA
832317 TCATTTTAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 2 0.02
41 126 0.98
42 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (40 bp):
TAGCAGGCTTAATGCCGGTGAAATAATCAGACTTTACGTC
Found at i:838316 original size:21 final size:23
Alignment explanation
Indices: 838270--838317 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
838260 GAACGAATCC
838270 AAAATGAAATTGAGAAAAGAAAA
1 AAAATGAAATTGAGAAAAGAAAA
*
838293 AAAAT-AAATGAGAGAAAAAGAAAA
1 AAAATGAAAT-TGAG-AAAAGAAAA
838317 A
1 A
838318 GAGATCGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 10 0.45
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (23 bp):
AAAATGAAATTGAGAAAAGAAAA
Found at i:846995 original size:57 final size:57
Alignment explanation
Indices: 846921--847032 Score: 147
Period size: 57 Copynumber: 2.0 Consensus size: 57
846911 TTCATTTCTT
*
846921 ATTTTTATTTTGAAGAAAAC-AAAATTCATTTCCAAATGATTTCAT-TTCTCCATTTTC
1 ATTTTCATTTTGAAGAAAACTAAAA-TCATTTCCAAATG-TTTCATATTCTCCATTTTC
* ** *
846978 ATTTTCATTTTGGAGAAAACTTTAATCATTTCCAAATGTTTCCTATTCTCCATTT
1 ATTTTCATTTTGAAGAAAACTAAAATCATTTCCAAATGTTTCATATTCTCCATTT
847033 CACCATTTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
56 5 0.10
57 41 0.85
58 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.46
Consensus pattern (57 bp):
ATTTTCATTTTGAAGAAAACTAAAATCATTTCCAAATGTTTCATATTCTCCATTTTC
Found at i:850806 original size:5 final size:5
Alignment explanation
Indices: 850780--850839 Score: 93
Period size: 5 Copynumber: 11.4 Consensus size: 5
850770 TCTAAATAGT
850780 TTTTA CTTTTA CTTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
850828 TTTTA TTTTA TT
1 TTTTA TTTTA TT
850840 ATTGTGTTGA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
5 37 0.70
6 16 0.30
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:857097 original size:566 final size:563
Alignment explanation
Indices: 856019--857148 Score: 1947
Period size: 566 Copynumber: 2.0 Consensus size: 563
856009 GAGTACTGTG
* *
856019 ATGAAGAAGCAACTCTATTTTGAATTTCTGTACTAGCTTGAGGAGTTGACTTTGTTGTAGATTCT
1 ATGAAGAAGCAACTCTATTCTGAATTTCTGTACTAGCTTGAGGAGTCGACTTTGTTGTAGATTCT
*
856084 GGATTAATTTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTTTAAGAGATAAGTT
66 GGATTAATTTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
* * *
856149 AGGTAGCATAATAGTTTCATAAAAAACATCTATTCTAATCACAACTTTTTTATTTTTAAGACACC
131 AGGTAGCATAATAGTTTCATAAAAAACATCTATGCTAATCACAACTTTTCTATTTTCAAGACACC
856214 ATAACTTATACCCTTTTACACTAGCTTTATAACAAAAAAAAACACATTTAATGGATCTCGGTTCT
196 ATAACTTATACCCTTTTACACTAGCTTTATAACAAAAAAAAACACATTTAATGGATCTCGGTTCT
856279 AATTTTCCATTATCAACATGAGCATACGCAGGACACCCAAAGATATTTAAATAAGAATAATTAGC
261 AATTTTCCATTATCAACATGAGCATACGCAGGACACCCAAAGATATTTAAATAAGAATAATTAGC
* * * * *
856344 AGGATTACCAGACCATACCTCTTGTGGAGTCTTTTTGTCAATGGCAACTAATGGAGATTGGTTGA
326 AAGATTACCAGACCATACCTCTTATGGAGTCTTTTTGTCAATGGCAACGAATGAAGATCGGTTGA
856409 TGAAAAAGCATGCAGTAGAGGTTGCTTTGGCCCAAAACGACTTTGGTAAGTTGACATTTGACAAC
391 TGAAAAAGCATGCAGTAGAGGTTGCTTTGGCCCAAAACGACTTTGGTAAGTTGACATTTGACAAC
* *
856474 ATACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAACAACATTTTGCTGTGGAGT
456 ATACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAAAAACATTTTGCTGTGAAGT
*
856539 ATGACGAACTGTCAAGTGTCTCACGATCCCTTCTGACTTGCAC
521 ATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
* *
856582 ATGAAGAAGCAACTCTATTCTGAATTTTTGTACTGGCTTGAGGAGTCGACTTTGTTGTAGATTCT
1 ATGAAGAAGCAACTCTATTCTGAATTTCTGTACTAGCTTGAGGAGTCGACTTTGTTGTAGATTCT
856647 GGATTAATTTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
66 GGATTAATTTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
* * *
856712 AGGTAGTATAATAGTTTCATTAAAAACAATATCTCTGCTAATCACAACTTTTCTATTTTCAAGAC
131 AGGTAGCATAATAGTTTCA-T-AAAA-AACATCTATGCTAATCACAACTTTTCTATTTTCAAGAC
* * * *
856777 TCTATAACTTATACCCTTTTACACTAGCTTTATAACCAAGAAAAACACATTTAATGGATCTCGGT
193 ACCATAACTTATACCCTTTTACACTAGCTTTATAACAAAAAAAAACACATTTAATGGATCTCGGT
* * *
856842 TCTAATTTTCCATTATCAACATGAGCATACGTAGGACGCCCAAAGATTTTTAAATAAGAATAATT
258 TCTAATTTTCCATTATCAACATGAGCATACGCAGGACACCCAAAGATATTTAAATAAGAATAATT
*
856907 AGCAAGATTACCAGACCATACCTCTTATGGAGTCTTTTTGTCAATGGCAACGGATGAAGATCGGT
323 AGCAAGATTACCAGACCATACCTCTTATGGAGTCTTTTTGTCAATGGCAACGAATGAAGATCGGT
856972 TGATGAAAAAGCATGCAGTAGAGGCTT-CTTTGGCCCAAAACGACTTTGGTAAGTTGACATTTGA
388 TGATGAAAAAGCATGCAGTAGAGG-TTGCTTTGGCCCAAAACGACTTTGGTAAGTTGACATTTGA
* **
857036 CAACATACATTGAACCTTCTCTATGATCATTTTGCTCATTCGTTCTAGAAAAATGTTTTGCTGTG
452 CAACATACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAAAAACATTTTGCTGTG
857101 AAGTATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
517 AAGTATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
857148 A
1 A
857149 GTTCATTAAA
Statistics
Matches: 533, Mismatches: 30, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
563 143 0.27
564 1 0.00
565 4 0.01
566 383 0.72
567 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (563 bp):
ATGAAGAAGCAACTCTATTCTGAATTTCTGTACTAGCTTGAGGAGTCGACTTTGTTGTAGATTCT
GGATTAATTTGATGCTCCACCTACTTTTGTTGTTCTTTATTGAAAGAGTCTGTAAGAGATAAGTT
AGGTAGCATAATAGTTTCATAAAAAACATCTATGCTAATCACAACTTTTCTATTTTCAAGACACC
ATAACTTATACCCTTTTACACTAGCTTTATAACAAAAAAAAACACATTTAATGGATCTCGGTTCT
AATTTTCCATTATCAACATGAGCATACGCAGGACACCCAAAGATATTTAAATAAGAATAATTAGC
AAGATTACCAGACCATACCTCTTATGGAGTCTTTTTGTCAATGGCAACGAATGAAGATCGGTTGA
TGAAAAAGCATGCAGTAGAGGTTGCTTTGGCCCAAAACGACTTTGGTAAGTTGACATTTGACAAC
ATACATTGAACCTTCTCCATGATCATTTTGCTCATTCGTTCTAGAAAAACATTTTGCTGTGAAGT
ATGACGAACTGTCAAGTGTCTCACGATCCCTTCTAACTTGCAC
Found at i:860925 original size:20 final size:20
Alignment explanation
Indices: 860902--860942 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
860892 AATAATCTTT
*
860902 AAAATTACAAAAAAATATAA
1 AAAATCACAAAAAAATATAA
*
860922 AAAATCACAAAAAAATGTAA
1 AAAATCACAAAAAAATATAA
860942 A
1 A
860943 TAAAATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAATCACAAAAAAATATAA
Found at i:861017 original size:22 final size:21
Alignment explanation
Indices: 860970--861014 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
860960 ATGAATTTTT
*
860970 AAATTTTTTAAAAATATGTTA
1 AAATTTTTTAAAAATATGTAA
*
860991 TAATTTTTTAAGAAAT-TGTAA
1 AAATTTTTTAA-AAATATGTAA
861012 AAA
1 AAA
861015 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (21 bp):
AAATTTTTTAAAAATATGTAA
Found at i:861037 original size:41 final size:40
Alignment explanation
Indices: 860978--861080 Score: 95
Period size: 40 Copynumber: 2.6 Consensus size: 40
860968 TTAAATTTTT
* * * *
860978 TAAAAATATGTTATAATTTTTTAAGAAATTGTAAAAAATTA
1 TAAAAATATATTATAATTTATT-ACAAATTCTAAAAAATTA
* *
861019 TAAAAATACTATTA-AATTTATTACAAATTCTAAAATATTG
1 TAAAAATA-TATTATAATTTATTACAAATTCTAAAAAATTA
*
861059 TAAAAA-AT-TATAAAATTTATTA
1 TAAAAATATAT-TATAATTTATTA
861081 GAATTCATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.02
38 3 0.06
39 10 0.19
40 20 0.38
41 15 0.28
42 4 0.08
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (40 bp):
TAAAAATATATTATAATTTATTACAAATTCTAAAAAATTA
Found at i:861092 original size:39 final size:39
Alignment explanation
Indices: 861003--861108 Score: 106
Period size: 39 Copynumber: 2.7 Consensus size: 39
860993 ATTTTTTAAG
* * * *
861003 AAATTGTAAAAAATTATAAAAATACTATTAAATTTATTAC
1 AAATTCTAAAAAATTGTAAAAA-ATTATAAAATTTATTAC
*
861043 AAATTCTAAAATATTGTAAAAAATTATAAAATTTATTA-
1 AAATTCTAAAAAATTGTAAAAAATTATAAAATTTATTAC
* * * *
861081 GAATTCATAAAAGATGGTATAAAATTAT
1 AAATTC-TAAAAAATTGTAAAAAATTAT
861109 TGAAAGTTCT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
38 5 0.09
39 32 0.57
40 19 0.34
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.37
Consensus pattern (39 bp):
AAATTCTAAAAAATTGTAAAAAATTATAAAATTTATTAC
Found at i:861709 original size:12 final size:12
Alignment explanation
Indices: 861692--861716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
861682 GGAATAATTA
861692 AAATTATTATTT
1 AAATTATTATTT
861704 AAATTATTATTT
1 AAATTATTATTT
861716 A
1 A
861717 TTAAAATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AAATTATTATTT
Found at i:878324 original size:30 final size:31
Alignment explanation
Indices: 878273--878333 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
878263 AAAAAGGTTA
878273 AGAACATTCAAGGACCAAATCGAAACAAATC
1 AGAACATTCAAGGACCAAATCGAAACAAATC
* *
878304 AGAACATTTAGGGA-CAAATCGAAACAAATC
1 AGAACATTCAAGGACCAAATCGAAACAAATC
878334 GGACAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 16 0.57
31 12 0.43
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (31 bp):
AGAACATTCAAGGACCAAATCGAAACAAATC
Found at i:879273 original size:34 final size:34
Alignment explanation
Indices: 879226--879312 Score: 104
Period size: 34 Copynumber: 2.6 Consensus size: 34
879216 ACACGGTTAA
* * *
879226 CCATCCAGCACACCAGATGA-TCGTATGAGCTAAT
1 CCATCCAGCACACCAAAT-ACTCGTATAAGCCAAT
* *
879260 TCATCCAGTACACCAAATACTCGTATAAGCCAAT
1 CCATCCAGCACACCAAATACTCGTATAAGCCAAT
*
879294 CCATCCAACACACCAAATA
1 CCATCCAGCACACCAAATA
879313 AAACTATAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 1 0.02
34 43 0.98
ACGTcount: A:0.38, C:0.32, G:0.10, T:0.20
Consensus pattern (34 bp):
CCATCCAGCACACCAAATACTCGTATAAGCCAAT
Found at i:884941 original size:18 final size:18
Alignment explanation
Indices: 884915--884951 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
884905 AGTTCGTGGG
*
884915 TGGTGTCTAATGGATCAA
1 TGGTATCTAATGGATCAA
884933 TGGTATCTAATGGATCAA
1 TGGTATCTAATGGATCAA
884951 T
1 T
884952 CCCTGCCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (18 bp):
TGGTATCTAATGGATCAA
Found at i:891649 original size:15 final size:15
Alignment explanation
Indices: 891629--891662 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
891619 GCTTTCAATA
*
891629 TTTATTTTTTATTAT
1 TTTATTTTTAATTAT
*
891644 TTTATTTTTAATTTT
1 TTTATTTTTAATTAT
891659 TTTA
1 TTTA
891663 AAGATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTTTTAATTAT
Found at i:892138 original size:29 final size:30
Alignment explanation
Indices: 892106--892163 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
892096 AATTTAATTC
892106 AAAATT-TAAAAAATAAATTTGGAAATAAA
1 AAAATTATAAAAAATAAATTTGGAAATAAA
* * * *
892135 AAAATTATAATAACTTATTTTGGAAATAA
1 AAAATTATAAAAAATAAATTTGGAAATAA
892164 TTTTTCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (30 bp):
AAAATTATAAAAAATAAATTTGGAAATAAA
Found at i:892839 original size:278 final size:279
Alignment explanation
Indices: 892331--892887 Score: 1107
Period size: 278 Copynumber: 2.0 Consensus size: 279
892321 TAAAAATGTT
892331 TAAAAAATTAGAATTATTAAAAATATAAAGTAAAATATTTTTAATTTTAAAAATAATTAATCATT
1 TAAAAAATTAGAATTATTAAAAATATAAAGTAAAATATTTTTAATTTTAAAAATAATTAATCATT
892396 ACCTTGGCATACACATGACTTGTAGCAAACGTTAATTTTTTTTAACTATTTTGAGGTTATGTGAT
66 ACCTTGGCATACACATGACTTGTAGCAAACGTTAATTTTTTTTAACTATTTTGAGGTTATGTGAT
892461 AAATAATATAAATTTAAGAACTAAAAAGAATAAAAAGAGCCAAAGTCGGAGGGCTAAAAAATTCA
131 AAATAATATAAATTTAAGAACTAAAAAGAATAAAAAGAGCCAAAGTCGGAGGGCTAAAAAATTCA
892526 TATGCCAAAAAATAAATGTAGGGCTAGTTCTTCATTGCTTTTGAAAAGTGCTGTGAAAAAGTACT
196 TATGCCAAAAAATAAATGTAGGGCTAGTTCTTCATTGCTTTTGAAAAGTGCTGTGAAAAAGTACT
892591 GTGGAAAAGTGATTTTGAG
261 GTGGAAAAGTGATTTTGAG
892610 TAAAAAATTA-AATTATTAAAAATATAAAGTAAAATATTTTTAATTTTAAAAATAATTAATCATT
1 TAAAAAATTAGAATTATTAAAAATATAAAGTAAAATATTTTTAATTTTAAAAATAATTAATCATT
892674 ACCTTGGCATACACATGACTTGTAGCAAACGTTAATTTTTTTTAACTATTTTGAGGTTATGTGAT
66 ACCTTGGCATACACATGACTTGTAGCAAACGTTAATTTTTTTTAACTATTTTGAGGTTATGTGAT
892739 AAATAATATAAATTTAAGAACTAAAAAGAATAAAAAGAGCCAAAGTCGGAGGGCTAAAAAATTCA
131 AAATAATATAAATTTAAGAACTAAAAAGAATAAAAAGAGCCAAAGTCGGAGGGCTAAAAAATTCA
892804 TATGCCAAAAAATAAATGTAGGGCTAGTTCTTCATTGCTTTTGAAAAGTGCTGTGAAAAAGTACT
196 TATGCCAAAAAATAAATGTAGGGCTAGTTCTTCATTGCTTTTGAAAAGTGCTGTGAAAAAGTACT
892869 GTGGAAAAGTGATTTTGAG
261 GTGGAAAAGTGATTTTGAG
892888 AAGTGCTTTT
Statistics
Matches: 278, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
278 268 0.96
279 10 0.04
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (279 bp):
TAAAAAATTAGAATTATTAAAAATATAAAGTAAAATATTTTTAATTTTAAAAATAATTAATCATT
ACCTTGGCATACACATGACTTGTAGCAAACGTTAATTTTTTTTAACTATTTTGAGGTTATGTGAT
AAATAATATAAATTTAAGAACTAAAAAGAATAAAAAGAGCCAAAGTCGGAGGGCTAAAAAATTCA
TATGCCAAAAAATAAATGTAGGGCTAGTTCTTCATTGCTTTTGAAAAGTGCTGTGAAAAAGTACT
GTGGAAAAGTGATTTTGAG
Found at i:892904 original size:13 final size:13
Alignment explanation
Indices: 892839--892904 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 13
892829 AGTTCTTCAT
892839 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
892852 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
* * *
892865 TACTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
892878 TGATTTTGAGAAG
1 TGCTTTTGAAAAG
*
892891 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
892904 T
1 T
892905 TTAGTTTAAA
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
12 3 0.08
13 34 0.89
14 1 0.03
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:895265 original size:14 final size:13
Alignment explanation
Indices: 895233--895270 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
895223 AAATGTTCCC
895233 ATTTCTTTTTTTT
1 ATTTCTTTTTTTT
895246 ATTTCTTTTATTTT
1 ATTTCTTTT-TTTT
895260 -TCTTCTTTTTT
1 AT-TTCTTTTTT
895271 CATCTTCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.82
Consensus pattern (13 bp):
ATTTCTTTTTTTT
Found at i:895790 original size:13 final size:13
Alignment explanation
Indices: 895771--895803 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
895761 AGAGGAGATA
895771 GAAAAAAATAA-G
1 GAAAAAAATAAGG
895783 GAAAAAAATAAGG
1 GAAAAAAATAAGG
895796 GAAAAAAA
1 GAAAAAAA
895804 AGAAGAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (13 bp):
GAAAAAAATAAGG
Found at i:902183 original size:46 final size:46
Alignment explanation
Indices: 902116--902211 Score: 167
Period size: 46 Copynumber: 2.1 Consensus size: 46
902106 TATTAATAAG
902116 TTAAGTCATTTAATTTGTCTAAATT-TCTACAGCAATTTAAGTTGTC
1 TTAAGTCATTTAATTTGTCTAAATTAT-TACAGCAATTTAAGTTGTC
*
902162 TTAAGTCATTTAATTTGTCTAAATTATTACAGGAATTTAAGTTGTC
1 TTAAGTCATTTAATTTGTCTAAATTATTACAGCAATTTAAGTTGTC
902208 TTAA
1 TTAA
902212 ACTAATTTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 47 0.98
47 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.46
Consensus pattern (46 bp):
TTAAGTCATTTAATTTGTCTAAATTATTACAGCAATTTAAGTTGTC
Found at i:910350 original size:13 final size:14
Alignment explanation
Indices: 910332--910360 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
910322 AAAGCGTAAG
910332 AATGAGG-AGAAAA
1 AATGAGGAAGAAAA
910345 AATGAGGAAGAAAA
1 AATGAGGAAGAAAA
910359 AA
1 AA
910361 CATAATGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.66, C:0.00, G:0.28, T:0.07
Consensus pattern (14 bp):
AATGAGGAAGAAAA
Found at i:912007 original size:34 final size:34
Alignment explanation
Indices: 911968--912036 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
911958 TCAATCTTAC
*
911968 TTGGGTTTTAATGTTTTTAGCATGAAAGTGTTAT
1 TTGGGTTTGAATGTTTTTAGCATGAAAGTGTTAT
* *
912002 TTGGGTTTGAATGTTTTTAGCGTGGAAGTGTTAT
1 TTGGGTTTGAATGTTTTTAGCATGAAAGTGTTAT
912036 T
1 T
912037 GCGGTCACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.20, C:0.03, G:0.28, T:0.49
Consensus pattern (34 bp):
TTGGGTTTGAATGTTTTTAGCATGAAAGTGTTAT
Found at i:917357 original size:24 final size:24
Alignment explanation
Indices: 917297--917357 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
917287 TTACATATTC
917297 AAATTAA-ATTTTAAAAATAATTA
1 AAATTAATATTTTAAAAATAATTA
* * *
917320 ATATTAAT-TGTTTAACAATATTTA
1 AAATTAATAT-TTTAAAAATAATTA
*
917344 AAATTTATATTTTA
1 AAATTAATATTTTA
917358 TATAAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
23 7 0.23
24 22 0.73
25 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
AAATTAATATTTTAAAAATAATTA
Found at i:919812 original size:21 final size:19
Alignment explanation
Indices: 919772--919815 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
919762 TTTCATCTTA
* *
919772 TTTTTTATACTTATCGTAT
1 TTTTTTATACTTAACCTAT
919791 TTTTTTATACTTCAACACTAT
1 TTTTTTATACTT-AAC-CTAT
919812 TTTT
1 TTTT
919816 ACTATTTCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 2 0.10
21 7 0.33
ACGTcount: A:0.23, C:0.14, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTTTATACTTAACCTAT
Found at i:924204 original size:16 final size:18
Alignment explanation
Indices: 924174--924206 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
924164 GAAATTTAAG
924174 AAAAACATAATTAATTTT
1 AAAAACATAATTAATTTT
924192 AAAAA-ATAA-TAATTT
1 AAAAACATAATTAATTT
924207 ATCAAAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAACATAATTAATTTT
Found at i:932562 original size:26 final size:26
Alignment explanation
Indices: 932531--932587 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
932521 TCTTATACCT
* * *
932531 ATTTTACCTCTAACAAAATTTTGACG
1 ATTTTACCCCTAACAAAATCTTAACG
**
932557 ATTTTACCCCTAGTAAAATCTTAACG
1 ATTTTACCCCTAACAAAATCTTAACG
932583 ATTTT
1 ATTTT
932588 TCCATTGGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCTAACAAAATCTTAACG
Found at i:934904 original size:15 final size:15
Alignment explanation
Indices: 934884--934912 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
934874 TGTATGTTGC
934884 TTGATAACACGGTGA
1 TTGATAACACGGTGA
934899 TTGATAACACGGTG
1 TTGATAACACGGTG
934913 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:949828 original size:8 final size:8
Alignment explanation
Indices: 949809--949843 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
949799 AAGTTTTATA
949809 TTTA-TTT
1 TTTATTTT
*
949816 TTTATTCT
1 TTTATTTT
949824 TTTATTTT
1 TTTATTTT
949832 TTTATTTT
1 TTTATTTT
949840 TTTA
1 TTTA
949844 CTTAGTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 4 0.16
8 21 0.84
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTATTTT
Found at i:950151 original size:10 final size:10
Alignment explanation
Indices: 950133--950162 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
950123 TGATTGTGGG
*
950133 AGCCATCTTC
1 AGCCTTCTTC
950143 AGCCTTCTTC
1 AGCCTTCTTC
950153 AGCCTTCTTC
1 AGCCTTCTTC
950163 TTCCCGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.40, G:0.10, T:0.37
Consensus pattern (10 bp):
AGCCTTCTTC
Found at i:957846 original size:18 final size:18
Alignment explanation
Indices: 957819--957859 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
957809 AATCAAGATG
957819 AAAC-TGATAAAATACGT
1 AAACATGATAAAATACGT
*
957836 AAACATGATAAAATATGT
1 AAACATGATAAAATACGT
957854 AAACAT
1 AAACAT
957860 CAAGGTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.56, C:0.10, G:0.10, T:0.24
Consensus pattern (18 bp):
AAACATGATAAAATACGT
Found at i:958964 original size:45 final size:45
Alignment explanation
Indices: 958900--959996 Score: 1446
Period size: 45 Copynumber: 24.4 Consensus size: 45
958890 CGAAAGAGTT
* *
958900 GGAAGACAAGATATGTTATCTTTGATCTACTTCGCTGCCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * *
958945 GGAAGACAAGATATGTTATCTTCGATCTACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * *
958990 GGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCGATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* *
959035 GGAAGACAAGATCTGTTAT-TTTCGATATACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTT-GATCTACTTCGCTACCAATACA
* * * *
959080 GGAAGATAAGATCTGCTATCTTTGATCTACTTCGCTGCTAGA-ACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCA-ATACA
* * *
959125 GGAAGACAAGATCTGTTATCTTTGATCTACTTCACTGCCACTACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* *
959170 GGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* *
959215 GGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * * * *
959260 GAAAGACAAAATCTGTTATCTTCGATCTACTTTGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* ** **
959305 GGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGTCGGTACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * *
959350 GGAAGACAAGATTTGTTATCTTTGATCTACTTCACTGCCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * * **
959395 GGAAGACAATATCTGTTATCTTCGATCTACTTCGCTGCCGGTACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
*
959440 GGAAGACAAGATCTGTTATCTTTGATCTACTTCACTACCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* *
959485 GGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * *
959530 GGAAGACAAGATATGTTATCTTCGATCTACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* *
959575 GGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * * * * *
959620 GGAAGATAAGATCTATTATCTTCGATCTACTTTGCTACTAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
*
959665 GGAAGACAAGATCTGTTATCTTTGATCTACTACGCTACCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * *
959710 AGAAGACAAAATCTGTTAT-TTTCGATCTACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTT-GATCTACTTCGCTACCAATACA
* * * * *
959755 GGAAGATAAGATCTGTTATCTTCGATCTATTTTGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* *
959800 GGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAATACA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * *
959845 AGAAGACAAGATCTGTTATCTTCGATCTACTTCGCTACCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
* * * *
959890 GGAAGACAATATCTGTTAT-TTTCGATCTGCTTCACTGCCAATACA
1 GGAAGACAAGATCTGTTATCTTT-GATCTACTTCGCTACCAATACA
* * * * *
959935 GGAAGACAATATCTGCTATTTTTGATCTACTTCGCTGCCAATATA
1 GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
959980 GGAAGACAAGATCTGTT
1 GGAAGACAAGATCTGTT
959997 GTTTTCACTG
Statistics
Matches: 916, Mismatches: 128, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
44 8 0.01
45 899 0.98
46 9 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (45 bp):
GGAAGACAAGATCTGTTATCTTTGATCTACTTCGCTACCAATACA
Found at i:962406 original size:25 final size:25
Alignment explanation
Indices: 962353--962418 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
962343 AAGAAAATCC
* *
962353 AAAAGAATGAAAGAATAATTATTCG
1 AAAAGAATGAAAGAATAATTACTCA
*
962378 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
962403 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
962419 TGTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:966550 original size:25 final size:24
Alignment explanation
Indices: 966505--966567 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
966495 TGTTATTATT
*
966505 TATTTTAAAATTTTTCATATATAA
1 TATTTTTAAATTTTTCATATATAA
** *
966529 TATTTTTAAATTGTTTTGTATATAG
1 TATTTTTAAATT-TTTCATATATAA
*
966554 TTTATTTTAAATTT
1 TAT-TTTTAAATTT
966568 CGTTTTTACA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 11 0.34
25 12 0.38
26 9 0.28
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (24 bp):
TATTTTTAAATTTTTCATATATAA
Found at i:968104 original size:11 final size:11
Alignment explanation
Indices: 968088--968112 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
968078 ATGCGGAGGT
968088 GAAAACCTCAC
1 GAAAACCTCAC
968099 GAAAACCTCAC
1 GAAAACCTCAC
968110 GAA
1 GAA
968113 GGCGTAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.32, G:0.12, T:0.08
Consensus pattern (11 bp):
GAAAACCTCAC
Found at i:969238 original size:3 final size:3
Alignment explanation
Indices: 969230--969292 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
969220 GATCAAGAAC
969230 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
969278 AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT
969293 GAAAAGATAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:970271 original size:21 final size:21
Alignment explanation
Indices: 970245--970299 Score: 96
Period size: 19 Copynumber: 2.7 Consensus size: 21
970235 AATCATATCT
970245 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
970266 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
970285 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
970300 CCTTGAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 19 0.59
21 13 0.41
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:986440 original size:27 final size:29
Alignment explanation
Indices: 986383--986441 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
986373 TTTGTTTTAA
*
986383 ATGTAGTGTATTTTAAAAATAAAAAATAT
1 ATGTAGTATATTTTAAAAATAAAAAATAT
986412 ATGTAGTATATTTTAAAAATAAAAAATAT
1 ATGTAGTATATTTTAAAAATAAAAAATAT
986441 A
1 A
986442 GTTTTTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.37
Consensus pattern (29 bp):
ATGTAGTATATTTTAAAAATAAAAAATAT
Found at i:986460 original size:9 final size:9
Alignment explanation
Indices: 986446--986483 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
986436 AATATAGTTT
986446 TTATTCGAA
1 TTATTCGAA
986455 TTATTCGAA
1 TTATTCGAA
*
986464 TTATTCGAG
1 TTATTCGAA
986473 TTATTCGAA
1 TTATTCGAA
986482 TT
1 TT
986484 CGAAAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATTCGAA
Found at i:990874 original size:14 final size:14
Alignment explanation
Indices: 990851--990889 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
990841 TATTCAGTAA
*
990851 TATTAATATTAATC
1 TATTATTATTAATC
*
990865 TATTATTATTAATT
1 TATTATTATTAATC
990879 TATTATTATTA
1 TATTATTATTA
990890 TCACCATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTATTAATC
Found at i:997542 original size:24 final size:24
Alignment explanation
Indices: 997498--997543 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
997488 AAAGATTGAA
* *
997498 GCAAAAACTGAATAAAGAACTTTG
1 GCAAAAAATAAATAAAGAACTTTG
997522 GCAAAAAATAAATGAAA-AACTT
1 GCAAAAAATAAAT-AAAGAACTT
997544 CACGCTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.20
Consensus pattern (24 bp):
GCAAAAAATAAATAAAGAACTTTG
Found at i:1009996 original size:41 final size:41
Alignment explanation
Indices: 1009895--1009998 Score: 145
Period size: 41 Copynumber: 2.5 Consensus size: 41
1009885 AATTATTGTA
* *
1009895 TGAATTGCACATGTGTGCCCCTGTTTGTACTTTAGTACCCC
1 TGAATTGCACATGTGTGCCCCTGTTCGTACTTCAGTACCCC
* * *
1009936 TAAATTGCACATGTATGCCCCTGTTCGTACTTCGGTACCCC
1 TGAATTGCACATGTGTGCCCCTGTTCGTACTTCAGTACCCC
**
1009977 TGAATTGCACATACGTGCCCCT
1 TGAATTGCACATGTGTGCCCCT
1009999 ATACAAACAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATGTGTGCCCCTGTTCGTACTTCAGTACCCC
Found at i:1012198 original size:32 final size:32
Alignment explanation
Indices: 1012157--1012226 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
1012147 GGCCAACAAA
1012157 GAACATGCATGGTTATTACTATACAGGAAAAT
1 GAACATGCATGGTTATTACTATACAGGAAAAT
*
1012189 GAACATGCATGGTTATTACTATACAGGATAAT
1 GAACATGCATGGTTATTACTATACAGGAAAAT
1012221 GAACAT
1 GAACAT
1012227 AAAAGCTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.29
Consensus pattern (32 bp):
GAACATGCATGGTTATTACTATACAGGAAAAT
Found at i:1015807 original size:75 final size:75
Alignment explanation
Indices: 1015585--1015795 Score: 332
Period size: 75 Copynumber: 2.8 Consensus size: 75
1015575 AATTTCACGT
* * * * * *
1015585 TCCCTCTCTTGATCGCGTTCACTCTCGTGTCTCCTCAACCTACTACTGCTTCTCTCTCTCCTATC
1 TCCCTCTCTAGCTCACGATCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATC
1015650 TCTCTCCCGC
66 TCTCTCCCGC
*
1015660 TCCCTCTCTAGCTCACGATCACTCTCGTGCCTCCTCGACCTACTACTGCTCCTCTCTCTCCTATC
1 TCCCTCTCTAGCTCACGATCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATC
*
1015725 TCTCTCCCGT
66 TCTCTCCCGC
* *
1015735 TCCCTCTCTATCTCACGATCACTTTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCC
1 TCCCTCTCTAGCTCACGATCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCC
1015796 GGTCTATCTC
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 125 1.00
ACGTcount: A:0.10, C:0.45, G:0.09, T:0.36
Consensus pattern (75 bp):
TCCCTCTCTAGCTCACGATCACTCTCGTGCCTCCTCGACCTACTACTGCTTCTCTCTCTCCTATC
TCTCTCCCGC
Found at i:1015832 original size:20 final size:20
Alignment explanation
Indices: 1015807--1015865 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
1015797 GTCTATCTCC
1015807 CTCTCTTTCTCCTTTTCCTT
1 CTCTCTTTCTCCTTTTCCTT
1015827 CTCTCTTTC-CC---TCC-T
1 CTCTCTTTCTCCTTTTCCTT
1015842 CTCTC--TCTCCTTTTCCTT
1 CTCTCTTTCTCCTTTTCCTT
1015860 CTCTCT
1 CTCTCT
1015866 CCTATCCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
13 2 0.06
14 2 0.06
15 6 0.18
16 3 0.09
17 3 0.09
18 6 0.18
19 2 0.06
20 9 0.27
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (20 bp):
CTCTCTTTCTCCTTTTCCTT
Found at i:1015844 original size:33 final size:33
Alignment explanation
Indices: 1015804--1015944 Score: 128
Period size: 33 Copynumber: 4.3 Consensus size: 33
1015794 CCGGTCTATC
1015804 TCCCTCTCTTTCTCCTTTTCCTTCTCTCT--T-
1 TCCCTCTCTTTCTCCTTTTCCTTCTCTCTCCTA
1015834 TCCCTCCTCTCTCTCTCCTTTTCCTTCTCTCTCCTA
1 TCCCT-CTCT-T-TCTCCTTTTCCTTCTCTCTCCTA
* * * * *
1015870 TCCCTCTCTTTCTCCTTATCTTTTTCTCTTCTT
1 TCCCTCTCTTTCTCCTTTTCCTTCTCTCTCCTA
* * * * *
1015903 TCTCTCTCCCTT-TCCTTCTCCCTCTCTCTGCTA
1 TCCCTCT-CTTTCTCCTTTTCCTTCTCTCTCCTA
1015936 TCCCTCTCT
1 TCCCTCTCT
1015945 CTGCTACCCC
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
30 5 0.06
31 4 0.04
32 2 0.02
33 64 0.72
34 4 0.04
35 5 0.06
36 5 0.06
ACGTcount: A:0.02, C:0.45, G:0.01, T:0.52
Consensus pattern (33 bp):
TCCCTCTCTTTCTCCTTTTCCTTCTCTCTCCTA
Found at i:1015878 original size:66 final size:66
Alignment explanation
Indices: 1015804--1015944 Score: 176
Period size: 66 Copynumber: 2.1 Consensus size: 66
1015794 CCGGTCTATC
* * * *
1015804 TCCCTCTCTTTCTCCTTTTCCTTCTCTCTTTCCCTC-CTCTCTCTCTCCTTTTCCTTCTCTCTCC
1 TCCCTCTCTTTCTCCTTATCCTTCTCTC-TTCCCTCTCTCTCCCTCTCCTTCTCCCTCTCTCTCC
1015868 TA
65 TA
* * ** * *
1015870 TCCCTCTCTTTCTCCTTATCTTTTTCTCTTCTTTCTCTCTCCCTTTCCTTCTCCCTCTCTCTGCT
1 TCCCTCTCTTTCTCCTTATCCTTCTCTCTTCCCTCTCTCTCCCTCTCCTTCTCCCTCTCTCTCCT
1015935 A
66 A
1015936 TCCCTCTCT
1 TCCCTCTCT
1015945 CTGCTACCCC
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
65 5 0.08
66 59 0.92
ACGTcount: A:0.02, C:0.45, G:0.01, T:0.52
Consensus pattern (66 bp):
TCCCTCTCTTTCTCCTTATCCTTCTCTCTTCCCTCTCTCTCCCTCTCCTTCTCCCTCTCTCTCCT
A
Found at i:1015941 original size:15 final size:15
Alignment explanation
Indices: 1015921--1015962 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
1015911 CCTTTCCTTC
1015921 TCCCTCTCTCTGCTA
1 TCCCTCTCTCTGCTA
1015936 TCCCTCTCTCTGCTA
1 TCCCTCTCTCTGCTA
*
1015951 CCCCTCCTCTCT
1 TCCCT-CTCTCT
1015963 AAATCCTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 19 0.76
16 6 0.24
ACGTcount: A:0.05, C:0.52, G:0.05, T:0.38
Consensus pattern (15 bp):
TCCCTCTCTCTGCTA
Found at i:1021056 original size:23 final size:23
Alignment explanation
Indices: 1021027--1021088 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
1021017 GCCCGGCCCG
* *
1021027 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAATTAAAATTAAAACTAA
*
1021050 TTTTTAAATAAAATTAAAACTAA
1 TTTTTAATTAAAATTAAAACTAA
*
1021073 TTGTT-ATTAAAATTAA
1 TTTTTAATTAAAATTAA
1021089 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 10 0.29
23 24 0.71
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTTTAATTAAAATTAAAACTAA
Found at i:1021101 original size:16 final size:16
Alignment explanation
Indices: 1021064--1021103 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
1021054 TAAATAAAAT
* *
1021064 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
1021080 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
1021096 TAAAATTA
1 TAAAATTA
1021104 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:1021209 original size:9 final size:9
Alignment explanation
Indices: 1021176--1021203 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1021166 TTTATCAAAT
1021176 TATTAATTG
1 TATTAATTG
1021185 TATTAATTG
1 TATTAATTG
1021194 TATTAATTG
1 TATTAATTG
1021203 T
1 T
1021204 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:1021213 original size:68 final size:68
Alignment explanation
Indices: 1021092--1021505 Score: 796
Period size: 68 Copynumber: 6.1 Consensus size: 68
1021082 AAATTAATTG
*
1021092 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1021155 TGA
66 TGA
1021158 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1021223 TGA
66 TGA
1021226 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1021291 TGA
66 TGA
1021294 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1021359 TGA
66 TGA
1021362 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1021427 TGA
66 TGA
*
1021430 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1021495 TGA
66 TGA
1021498 TTAGTAAA
1 TTAGTAAA
1021506 ACAAACTTGA
Statistics
Matches: 344, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
66 26 0.08
68 318 0.92
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (68 bp):
TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
TGA
Found at i:1021277 original size:9 final size:9
Alignment explanation
Indices: 1021244--1021271 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1021234 TTTATCAAAT
1021244 TATTAATTG
1 TATTAATTG
1021253 TATTAATTG
1 TATTAATTG
1021262 TATTAATTG
1 TATTAATTG
1021271 T
1 T
1021272 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:1021345 original size:9 final size:9
Alignment explanation
Indices: 1021312--1021339 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1021302 TTTATCAAAT
1021312 TATTAATTG
1 TATTAATTG
1021321 TATTAATTG
1 TATTAATTG
1021330 TATTAATTG
1 TATTAATTG
1021339 T
1 T
1021340 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:1021413 original size:9 final size:9
Alignment explanation
Indices: 1021380--1021407 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1021370 TTTATCAAAT
1021380 TATTAATTG
1 TATTAATTG
1021389 TATTAATTG
1 TATTAATTG
1021398 TATTAATTG
1 TATTAATTG
1021407 T
1 T
1021408 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:1021460 original size:9 final size:9
Alignment explanation
Indices: 1021448--1021475 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1021438 TTTATCAAAT
1021448 TATTAATTG
1 TATTAATTG
1021457 TATTAATTG
1 TATTAATTG
1021466 TATTAATTG
1 TATTAATTG
1021475 T
1 T
1021476 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:1021619 original size:23 final size:24
Alignment explanation
Indices: 1021572--1021617 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
1021562 AAATAAACTT
1021572 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
1021596 AAAATAAAAAA-TATATATATTT
1 AAAATAAAAAACTAT-TATATTT
1021618 AATATTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:1023909 original size:15 final size:15
Alignment explanation
Indices: 1023891--1023925 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
1023881 TAAAAATAAA
1023891 AAATATATTTTTATT
1 AAATATATTTTTATT
*
1023906 AAATTCTATTTTTATT
1 AAA-TATATTTTTATT
1023922 AAAT
1 AAAT
1023926 TCAGGCCGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
AAATATATTTTTATT
Done.