Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold85
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1711616
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 47147 characters in sequence are not A, C, G, or T
File 4 of 5
Found at i:1023917 original size:16 final size:16
Alignment explanation
Indices: 1023896--1023927 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1023886 ATAAAAAATA
1023896 TATTTTTATTAAATTC
1 TATTTTTATTAAATTC
1023912 TATTTTTATTAAATTC
1 TATTTTTATTAAATTC
1023928 AGGCCGGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTTTATTAAATTC
Found at i:1029601 original size:18 final size:17
Alignment explanation
Indices: 1029553--1029602 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
1029543 TTAAAATAAA
*
1029553 TATTTTATATTTAAAAT
1 TATTATATATTTAAAAT
* *
1029570 GATGATA-ATTTAAAAT
1 TATTATATATTTAAAAT
1029586 TATTATATACTTTAAAA
1 TATTATATA-TTTAAAA
1029603 ACAAAGTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 14 0.54
17 5 0.19
18 7 0.27
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (17 bp):
TATTATATATTTAAAAT
Found at i:1031033 original size:40 final size:40
Alignment explanation
Indices: 1030978--1031057 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
1030968 GTGTTGGCTG
1030978 AACCTTGGAAGCTTTAAAAATGGCTTCTCATGCTATGGTT
1 AACCTTGGAAGCTTTAAAAATGGCTTCTCATGCTATGGTT
1031018 AACCTTGGAAGCTTTAAAAATGGCTTCTCATGCTATGGTT
1 AACCTTGGAAGCTTTAAAAATGGCTTCTCATGCTATGGTT
1031058 TTCTAATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (40 bp):
AACCTTGGAAGCTTTAAAAATGGCTTCTCATGCTATGGTT
Found at i:1036829 original size:8 final size:8
Alignment explanation
Indices: 1036816--1036842 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
1036806 GAGAGGTATG
1036816 AAACCTCT
1 AAACCTCT
1036824 AAACCTCT
1 AAACCTCT
1036832 AAACCTCT
1 AAACCTCT
1036840 AAA
1 AAA
1036843 TGGTGGAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (8 bp):
AAACCTCT
Found at i:1040153 original size:15 final size:16
Alignment explanation
Indices: 1040133--1040162 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1040123 TTTAAATAGC
1040133 ATTTTAATG-TATTTG
1 ATTTTAATGCTATTTG
1040148 ATTTTAATGCTATTT
1 ATTTTAATGCTATTT
1040163 TGTCATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (16 bp):
ATTTTAATGCTATTTG
Found at i:1040928 original size:12 final size:12
Alignment explanation
Indices: 1040911--1040942 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1040901 CTTGTCGGAG
1040911 ATCCATCACACT
1 ATCCATCACACT
*
1040923 ATCCATCATACT
1 ATCCATCACACT
1040935 ATCCATCA
1 ATCCATCA
1040943 GCTATATCGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.38, G:0.00, T:0.28
Consensus pattern (12 bp):
ATCCATCACACT
Found at i:1043688 original size:138 final size:136
Alignment explanation
Indices: 1043290--1043713 Score: 650
Period size: 138 Copynumber: 3.1 Consensus size: 136
1043280 AGAGAACATA
* *
1043290 AATATAATGAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACAAAATTTAT
1 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
* * * * *
1043355 TAATATAAACATTTATATTAATTATTTATGTCAAAATGTAAAAGACATGGAAATAAATATTATTT
66 TAATATAAACAATTATATTAATAATTTA-GTCAAAATATAAAAGACATGGAAATTAATATTCTTT
1043420 TGGAAAG
130 TGGAAAG
* * *
1043427 AATATAATCAATATATTAATTTGATTCATACAAAATATTAATTGTATATATATTTTATCAAATTT
1 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTG--TATATATTTTACCAAATTT
1043492 ATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTC
64 ATTAATATAAACAATTATATTAA-TAATTT-AGTCAAAATATAAAAGACATGGAAATTAATATTC
1043557 TTTTGGAAAG
127 TTTTGGAAAG
*
1043567 AATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTACCAAATTTAT
1 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
* *
1043632 TAATATAAACAGTTATATTAATGAAGTTTAGTCAAAATATAAAAGACATAGAAATTAATATTCTT
66 TAATATAAACAATTATATTAAT-AA-TTTAGTCAAAATATAAAAGACATGGAAATTAATATTCTT
* *
1043697 TTAGAAAT
129 TTGGAAAG
1043705 AATATAATT
1 AATATAATT
1043714 CATTTTTCTA
Statistics
Matches: 264, Mismatches: 17, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
137 43 0.16
138 92 0.35
139 42 0.16
140 86 0.33
141 1 0.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (136 bp):
AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
TAATATAAACAATTATATTAATAATTTAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
GGAAAG
Found at i:1047577 original size:21 final size:21
Alignment explanation
Indices: 1047551--1047597 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
1047541 AGCAACGTGT
* *
1047551 ACATAACTTACAAATATGATC
1 ACATAACGTACAAATATAATC
1047572 ACATAACGTACAAATATAATC
1 ACATAACGTACAAATATAATC
1047593 ACATA
1 ACATA
1047598 TCACATAACG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.19, G:0.04, T:0.26
Consensus pattern (21 bp):
ACATAACGTACAAATATAATC
Found at i:1047702 original size:26 final size:26
Alignment explanation
Indices: 1047666--1047734 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
1047656 TTTACATCAA
1047666 TGCTCACACGAGCTGTGAAATGGGCT
1 TGCTCACACGAGCTGTGAAATGGGCT
1047692 TGCTCACACGAGCTGTGAAATGGGCT
1 TGCTCACACGAGCTGTGAAATGGGCT
*
1047718 TGCTCACACGAGTTGTG
1 TGCTCACACGAGCTGTG
1047735 GGTCGGAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATGGGCT
Found at i:1049513 original size:58 final size:58
Alignment explanation
Indices: 1049451--1049773 Score: 280
Period size: 58 Copynumber: 5.6 Consensus size: 58
1049441 GAGACGGCCG
* * *
1049451 CAAAGACATCCTTTTAACATAGATAGCCATAAAGACATTCATTTAATTGAGATAGCCA
1 CAAAGGCATCCTTTTAACAGAGATAGCCATAAAGACATTCATTTAACTGAGATAGCCA
* * * * * *
1049509 CAAAGGCATCCTTTTAACAAAGATCGCCAGAAA-ATCATTCATTTAATTTAGATCA-CTA
1 CAAAGGCATCCTTTTAACAGAGATAGCCATAAAGA-CATTCATTTAACTGAGAT-AGCCA
* * * * * *
1049567 CAAAGGCATCCTTTCAACAGAGATCGACAAAAAGGCATTCATTTAACTAAGATAGCCA
1 CAAAGGCATCCTTTTAACAGAGATAGCCATAAAGACATTCATTTAACTGAGATAGCCA
* * *
1049625 CAAAGGCTTCCTTATAACAGAGATCA-CCATAAAGGCATTCATTTAACTGAGATAGCCA
1 CAAAGGCATCCTTTTAACAGAGAT-AGCCATAAAGACATTCATTTAACTGAGATAGCCA
* * * * * * *
1049683 CAAAGGCATTCATTTAACTA-AGACT-GCCACAAAGGC-TTCGTTATAACTAAGATCGCCA
1 CAAAGGCATCCTTTTAAC-AGAGA-TAGCCATAAAGACATTCATT-TAACTGAGATAGCCA
* * * * *
1049741 CAAATGCTTTCTTATAACAGAGATAGCCGTAAA
1 CAAAGGCATCCTTTTAACAGAGATAGCCATAAA
1049774 TGTGTCCATT
Statistics
Matches: 219, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
57 9 0.04
58 207 0.95
59 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.25
Consensus pattern (58 bp):
CAAAGGCATCCTTTTAACAGAGATAGCCATAAAGACATTCATTTAACTGAGATAGCCA
Found at i:1049686 original size:116 final size:114
Alignment explanation
Indices: 1049451--1049764 Score: 319
Period size: 116 Copynumber: 2.7 Consensus size: 114
1049441 GAGACGGCCG
* * * * * *
1049451 CAAAGACATCCTTTTAACATAGATAGCCATAAAGACATTCATTTAATTGAGATAGCCACAAAGGC
1 CAAAGGCATCC-TTTAACA-AGATCGCCAAAAAGGCATTCATTTAACTAAGATAGCCACAAAGGC
* * * * * * * *
1049516 ATCCTTTTAACAAAGATCGCCAGAAAATCATTCATTTAATTTAGATCACTA
64 TTCCTTATAACAGAGATCACCAGAAAAGCATTCATTTAACTGAGATCACCA
*
1049567 CAAAGGCATCCTTTCAACAGAGATCGACAAAAAGGCATTCATTTAACTAAGATAGCCACAAAGGC
1 CAAAGGCATCCTTT-AACA-AGATCGCCAAAAAGGCATTCATTTAACTAAGATAGCCACAAAGGC
* *
1049632 TTCCTTATAACAGAGATCACCATAAAGGCATTCATTTAACTGAGAT-AGCCA
64 TTCCTTATAACAGAGATCACCAGAAAAGCATTCATTTAACTGAGATCA-CCA
* * * * *
1049683 CAAAGGCATTCATTTAACTAAGA-CTGCCACAAAGGC-TTCGTTATAACTAAGATCGCCACAAAT
1 CAAAGGCA-TCCTTTAAC-AAGATC-GCCAAAAAGGCATTCATT-TAACTAAGATAGCCACAAAG
*
1049746 GCTTTCTTATAACAGAGAT
62 GCTTCCTTATAACAGAGAT
1049765 AGCCGTAAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
115 10 0.06
116 151 0.90
117 6 0.04
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (114 bp):
CAAAGGCATCCTTTAACAAGATCGCCAAAAAGGCATTCATTTAACTAAGATAGCCACAAAGGCTT
CCTTATAACAGAGATCACCAGAAAAGCATTCATTTAACTGAGATCACCA
Found at i:1049688 original size:29 final size:29
Alignment explanation
Indices: 1049463--1049831 Score: 247
Period size: 29 Copynumber: 12.8 Consensus size: 29
1049453 AAGACATCCT
* *
1049463 TTTAACAT-AGATAGCCATAAAGACATTCA
1 TTTAAC-TGAGATAGCCACAAAGGCATTCA
* * *
1049492 TTTAATTGAGATAGCCACAAAGGCATCCT
1 TTTAACTGAGATAGCCACAAAGGCATTCA
** * * **
1049521 TTTAACAAAGATCGCCAGAAAATCATTCA
1 TTTAACTGAGATAGCCACAAAGGCATTCA
* * * *
1049550 TTTAATTTAGATCA-CTACAAAGGCA-TCC
1 TTTAACTGAGAT-AGCCACAAAGGCATTCA
* * * *
1049578 TTTCAACAGAGATCGACAAAAAGGCATTCA
1 TTT-AACTGAGATAGCCACAAAGGCATTCA
* *
1049608 TTTAACTAAGATAGCCACAAAGGC-TTCC
1 TTTAACTGAGATAGCCACAAAGGCATTCA
* *
1049636 TTATAACAGAGATCA-CCATAAAGGCATTCA
1 TT-TAACTGAGAT-AGCCACAAAGGCATTCA
1049666 TTTAACTGAGATAGCCACAAAGGCATTCA
1 TTTAACTGAGATAGCCACAAAGGCATTCA
* *
1049695 TTTAACTAAGACT-GCCACAAAGGC-TTCG
1 TTTAACTGAGA-TAGCCACAAAGGCATTCA
* * * *
1049723 TTATAACTAAGATCGCCACAAATGCTTTC-
1 TT-TAACTGAGATAGCCACAAAGGCATTCA
* ** * ** *
1049752 TTATAACAGAGATAGCCGTAAATGTGTCCA
1 TT-TAACTGAGATAGCCACAAAGGCATTCA
* *
1049782 -TTAA--GAGATAGCGAAAAAGGCATTCA
1 TTTAACTGAGATAGCCACAAAGGCATTCA
1049808 TTTAACTGAGATAGCCACAAAGGC
1 TTTAACTGAGATAGCCACAAAGGC
1049832 TTACGTATAC
Statistics
Matches: 260, Mismatches: 63, Indels: 34
0.73 0.18 0.10
Matches are distributed among these distances:
26 15 0.06
27 4 0.02
28 21 0.08
29 205 0.79
30 15 0.06
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.25
Consensus pattern (29 bp):
TTTAACTGAGATAGCCACAAAGGCATTCA
Found at i:1055238 original size:25 final size:25
Alignment explanation
Indices: 1055168--1055252 Score: 93
Period size: 25 Copynumber: 3.4 Consensus size: 25
1055158 CCTGTACATG
*
1055168 TATGCTCATACGAGCTATGAATCGA
1 TATGCTCATACAAGCTATGAATCGA
* * *
1055193 TATGCTC-T-CATGAGTTGTGAATCGG
1 TATGCTCATACA--AGCTATGAATCGA
*
1055218 TAAGCTCATACAAGCTATGAATCGA
1 TATGCTCATACAAGCTATGAATCGA
1055243 TATGCTCATA
1 TATGCTCATA
1055253 AGAGTCGTAG
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 42 0.89
26 1 0.02
27 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (25 bp):
TATGCTCATACAAGCTATGAATCGA
Found at i:1059766 original size:20 final size:20
Alignment explanation
Indices: 1059726--1059773 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
1059716 CATGCTTTCT
*
1059726 ATTCAC-ATTTTCATATTTA
1 ATTCACAATTTTCAAATTTA
1059745 ATTCACAATTTT-AAATTATA
1 ATTCACAATTTTCAAATT-TA
*
1059765 ATCCACAAT
1 ATTCACAAT
1059774 CACGTTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTCACAATTTTCAAATTTA
Found at i:1059968 original size:38 final size:39
Alignment explanation
Indices: 1059926--1060029 Score: 104
Period size: 41 Copynumber: 2.7 Consensus size: 39
1059916 AGTTCAAAGC
*
1059926 AAAGTTGACACCTAGTGTCTCATCG-GCCTAGCCGAAGT
1 AAAGTTGACACCTAGTGTCTCATCGAACCTAGCCGAAGT
* * * * * *
1059964 AAAG-TGATACCCAGTATCTCATCGAATCTATCTGAAGT
1 AAAGTTGACACCTAGTGTCTCATCGAACCTAGCCGAAGT
*
1060002 AAAATAGTGACACCTAGTGTCTCATCGA
1 AAAGT--TGACACCTAGTGTCTCATCGA
1060030 CTCGAGGTCG
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
37 17 0.33
38 16 0.31
41 18 0.35
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (39 bp):
AAAGTTGACACCTAGTGTCTCATCGAACCTAGCCGAAGT
Found at i:1060167 original size:18 final size:17
Alignment explanation
Indices: 1060121--1060174 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
1060111 TTTCCAATTC
1060121 TCAATTCAAATTCACTT
1 TCAATTCAAATTCACTT
* *
1060138 TCATTTCAAAATTTACTT
1 TCAATTC-AAATTCACTT
1060156 TCAATATCAAATTCACTT
1 TCAAT-TCAAATTCACTT
1060174 T
1 T
1060175 TTCATTCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 6 0.19
18 23 0.74
19 2 0.06
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.44
Consensus pattern (17 bp):
TCAATTCAAATTCACTT
Found at i:1061278 original size:192 final size:192
Alignment explanation
Indices: 1060951--1061325 Score: 723
Period size: 192 Copynumber: 2.0 Consensus size: 192
1060941 TTTAGTATGG
*
1060951 TATATTATTATATTAATTTAATAATAATAATTATTTCTTAAATATTAAGTAAATAAATATGTATT
1 TATATTATTATATTAACTTAATAATAATAATTATTTCTTAAATATTAAGTAAATAAATATGTATT
1061016 TTACAATTGTAAGCATATGATTTAGTACACTTGTACTTTACTATCACCATACAATTGTCAACTTA
66 TTACAATTGTAAGCATATGATTTAGTACACTTGTACTTTACTATCACCATACAATTGTCAACTTA
1061081 TTAATTTGTTCATTAATCTAATAATATAATATCAATTAAATAATAATAACAATGATAATTAT
131 TTAATTTGTTCATTAATCTAATAATATAATATCAATTAAATAATAATAACAATGATAATTAT
1061143 TATATTATTATATTAACTTAATAATAATAATTATTTCTTAAATATTAAGTAAATAAATATGTATT
1 TATATTATTATATTAACTTAATAATAATAATTATTTCTTAAATATTAAGTAAATAAATATGTATT
* *
1061208 TTACAATTGTATGCATATGATTTATTACACTTGTACTTTACTATCACCATACAATTGTCAACTTA
66 TTACAATTGTAAGCATATGATTTAGTACACTTGTACTTTACTATCACCATACAATTGTCAACTTA
1061273 TTAATTTGTTCATTAATCTAATAATATAATATCAATTAAATAATAATAACAAT
131 TTAATTTGTTCATTAATCTAATAATATAATATCAATTAAATAATAATAACAAT
1061326 AATTACTATT
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
192 180 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.43
Consensus pattern (192 bp):
TATATTATTATATTAACTTAATAATAATAATTATTTCTTAAATATTAAGTAAATAAATATGTATT
TTACAATTGTAAGCATATGATTTAGTACACTTGTACTTTACTATCACCATACAATTGTCAACTTA
TTAATTTGTTCATTAATCTAATAATATAATATCAATTAAATAATAATAACAATGATAATTAT
Found at i:1061536 original size:8 final size:8
Alignment explanation
Indices: 1061523--1061558 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
1061513 AATTTATTTC
1061523 ATAATATA
1 ATAATATA
1061531 ATAATATA
1 ATAATATA
1061539 ATCAA-ATA
1 AT-AATATA
1061547 ATAATATA
1 ATAATATA
1061555 ATAA
1 ATAA
1061559 CAATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 2 0.08
8 22 0.85
9 2 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (8 bp):
ATAATATA
Found at i:1061549 original size:16 final size:17
Alignment explanation
Indices: 1061528--1061566 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
1061518 ATTTCATAAT
*
1061528 ATAATAATATAATCA-A
1 ATAATAATATAATAACA
1061544 ATAATAATATAATAACA
1 ATAATAATATAATAACA
1061561 ATAATA
1 ATAATA
1061567 TATTTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAATAATATAATAACA
Found at i:1061569 original size:16 final size:16
Alignment explanation
Indices: 1061523--1061566 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
1061513 AATTTATTTC
*
1061523 ATAATATAATAATATA
1 ATAAAATAATAATATA
*
1061539 ATCAAATAATAATATA
1 ATAAAATAATAATATA
1061555 ATAACAATAATA
1 ATAA-AATAATA
1061567 TATTTTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAATAATAATATA
Found at i:1070491 original size:14 final size:14
Alignment explanation
Indices: 1070474--1070510 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1070464 ATAATTCAAT
1070474 AAATTAAAAAAATA
1 AAATTAAAAAAATA
**
1070488 AAATTATTAAAATA
1 AAATTAAAAAAATA
1070502 AAATTAAAA
1 AAATTAAAA
1070511 TTTAGGAGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATTAAAAAAATA
Found at i:1084406 original size:20 final size:20
Alignment explanation
Indices: 1084381--1084418 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1084371 TTGGTATATG
1084381 TATGTTTA-TGATCATTTGGT
1 TATGTTTAGTG-TCATTTGGT
1084401 TATGTTTAGTGTCATTTG
1 TATGTTTAGTGTCATTTG
1084419 ATATATGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.18, C:0.05, G:0.21, T:0.55
Consensus pattern (20 bp):
TATGTTTAGTGTCATTTGGT
Found at i:1090525 original size:16 final size:18
Alignment explanation
Indices: 1090498--1090532 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
1090488 CATTTAGTGT
1090498 ATTATATTTTAAA-AAAA
1 ATTATATTTTAAATAAAA
1090515 ATTAT-TTTTAAATAAAA
1 ATTATATTTTAAATAAAA
1090532 A
1 A
1090533 ACTAATCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTATATTTTAAATAAAA
Found at i:1091059 original size:5 final size:5
Alignment explanation
Indices: 1091049--1091087 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
1091039 CTTACTGATT
1091049 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATAT
1091088 ATTAATAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATC
Found at i:1091165 original size:256 final size:253
Alignment explanation
Indices: 1090691--1091187 Score: 655
Period size: 253 Copynumber: 1.9 Consensus size: 253
1090681 TGAGCACCTC
* ** *
1090691 TATATGTTAATTATTATAATATATTATTGTTTATTATTATACTGGTTAAAATATGCTCTAAGTCC
1 TATATATTAATTATTATAATATATTACCGTTTATTATTATACTAGTTAAAATATGCTCTAAGT-C
* * **
1090756 CTATATTTTTCTTACATTTGAAAGTTAGCCCTCCTACTATAATGTTTTATCATATCATATAGTAT
65 CTATATTTTTCTTACATTTAAAAGTTAGCCCTCCTACTATAATATCATATCATATCATATAGTAT
** * *
1090821 ATAATATGTTAATAGTTTATATATATATATATGCATCAATGATTAAGCATTATAATATCATGTAA
130 ATAATATCATAATAGTTAATATATATATATATGCATCAATGATTAAACATTATAATATCATGTAA
*
1090886 TACTATATCTTTTATTGTAATCTATATTATAATAATAGTTATATATAATAGCAATACAT
195 TACTATATCTTTTATTATAATCTATATTATAATAATAGTTATATATAATAGCAATACAT
* *
1090945 TATATATTACTTATTAT-ATATATTACCGTTTATTATTATACTAGTTGAAATATGCTCTAAGT-C
1 TATATATTAATTATTATAATATATTACCGTTTATTATTATACTAGTTAAAATATGCTCTAAGTCC
* * *
1091008 TATATTTTTCTTACATTTAAAAGTTAGCTCTCTTACTGATTATATCATATCATATCATATCA-TA
66 TATATTTTTCTTACATTTAAAAGTTAGCCCTCCTACT-ATAATATCATATCATATCATAT-AGTA
* *
1091072 TCATATCATATCAT-ATA-TTAATAGTTTATATATATGCA-CTGATGATTAAACATTATAATATC
129 T-ATA--ATATCATAATAGTTAATA-TATATATATATGCATC-AATGATTAAACATTATAATAT-
* * *
1091134 ACATGTAATATTTTATCTTTTATTATAATCTATATTATAATAATATTTATATAT
188 -CATGTAATACTATATCTTTTATTATAATCTATATTATAATAATAGTTATATAT
1091188 GTATTAATAT
Statistics
Matches: 211, Mismatches: 23, Indels: 16
0.84 0.09 0.06
Matches are distributed among these distances:
251 35 0.17
252 21 0.10
253 51 0.24
254 50 0.24
255 5 0.02
256 49 0.23
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.46
Consensus pattern (253 bp):
TATATATTAATTATTATAATATATTACCGTTTATTATTATACTAGTTAAAATATGCTCTAAGTCC
TATATTTTTCTTACATTTAAAAGTTAGCCCTCCTACTATAATATCATATCATATCATATAGTATA
TAATATCATAATAGTTAATATATATATATATGCATCAATGATTAAACATTATAATATCATGTAAT
ACTATATCTTTTATTATAATCTATATTATAATAATAGTTATATATAATAGCAATACAT
Found at i:1095864 original size:2 final size:2
Alignment explanation
Indices: 1095857--1095893 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1095847 CTTAAAGAAA
1095857 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1095894 TGCATAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1098300 original size:4 final size:4
Alignment explanation
Indices: 1098291--1098318 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
1098281 TATGCTGCTG
1098291 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1098319 AAAATTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:1104772 original size:16 final size:14
Alignment explanation
Indices: 1104753--1104786 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
1104743 TTTATAAACA
1104753 TTAATTATTATTATAT
1 TTAATTATT-TT-TAT
1104769 TTAATTATTTTTAT
1 TTAATTATTTTTAT
1104783 TTAA
1 TTAA
1104787 AGTGTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 2 0.11
16 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAATTATTTTTAT
Found at i:1114595 original size:25 final size:25
Alignment explanation
Indices: 1114561--1114610 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1114551 TTTGGCTAAA
1114561 ATGAGTTTTTAGTCAATTCAACACT
1 ATGAGTTTTTAGTCAATTCAACACT
1114586 ATGAGTTTTTAGTCAATTCAACACT
1 ATGAGTTTTTAGTCAATTCAACACT
1114611 TTCCCAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (25 bp):
ATGAGTTTTTAGTCAATTCAACACT
Found at i:1118824 original size:16 final size:15
Alignment explanation
Indices: 1118788--1118827 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
1118778 ATGTCCTCAC
1118788 AATTTTTATTCTAGA
1 AATTTTTATTCTAGA
1118803 AATTTTTATTCTAGA
1 AATTTTTATTCTAGA
1118818 AATTTTTATT
1 AATTTTTATT
1118828 TTTTAACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (15 bp):
AATTTTTATTCTAGA
Found at i:1128154 original size:31 final size:31
Alignment explanation
Indices: 1128116--1128180 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
1128106 TTTTCACCTT
1128116 AGGGGTGCACCTATTCTGTTCGTTAAGAAAA
1 AGGGGTGCACCTATTCTGTTCGTTAAGAAAA
1128147 AGGGGTGCACCTATTCTGTTCGTTAAGAAAA
1 AGGGGTGCACCTATTCTGTTCGTTAAGAAAA
1128178 AGG
1 AGG
1128181 ACAGATCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (31 bp):
AGGGGTGCACCTATTCTGTTCGTTAAGAAAA
Found at i:1133875 original size:27 final size:27
Alignment explanation
Indices: 1133852--1133918 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
1133842 ACATACTCTA
1133852 AATGGATTGCCTTTTTGGTGTACTATG
1 AATGGATTGCCTTTTTGGTGTACTATG
* *
1133879 AATGGATTGCCTTTTTTGTGTAGTATG
1 AATGGATTGCCTTTTTGGTGTACTATG
1133906 AATGGATTGCCTT
1 AATGGATTGCCTT
1133919 ATGGCGAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.19, C:0.10, G:0.25, T:0.45
Consensus pattern (27 bp):
AATGGATTGCCTTTTTGGTGTACTATG
Found at i:1148435 original size:20 final size:20
Alignment explanation
Indices: 1148410--1148451 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
1148400 ACTATTATTA
*
1148410 TAATATTCAACATTATTGCT
1 TAATATCCAACATTATTGCT
*
1148430 TAATATCCAATATTATTGCT
1 TAATATCCAACATTATTGCT
1148450 TA
1 TA
1148452 GCATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (20 bp):
TAATATCCAACATTATTGCT
Found at i:1149563 original size:20 final size:20
Alignment explanation
Indices: 1149525--1149562 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
1149515 AGAGGTCTTT
1149525 TACCAATAAATACTTTTTTC
1 TACCAATAAATACTTTTTTC
1149545 TACCAA-AAAGTA-TTTTTT
1 TACCAATAAA-TACTTTTTT
1149563 TTCTTTCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.16, G:0.03, T:0.45
Consensus pattern (20 bp):
TACCAATAAATACTTTTTTC
Found at i:1158841 original size:15 final size:16
Alignment explanation
Indices: 1158821--1158852 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
1158811 AAATATTTTT
1158821 AAAAATAA-TTTAATA
1 AAAAATAATTTTAATA
1158836 AAAAATAATTTTAATA
1 AAAAATAATTTTAATA
1158852 A
1 A
1158853 TATGCTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAAATAATTTTAATA
Found at i:1159252 original size:9 final size:9
Alignment explanation
Indices: 1159238--1159268 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
1159228 GTTAAATGAA
1159238 TCGAGTTAT
1 TCGAGTTAT
*
1159247 TCGAGTTAA
1 TCGAGTTAT
1159256 TCGAGTTAT
1 TCGAGTTAT
1159265 TCGA
1 TCGA
1159269 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:1159338 original size:9 final size:9
Alignment explanation
Indices: 1159321--1159357 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
1159311 TGAGTTTTCG
1159321 AATTCGAAT
1 AATTCGAAT
*
1159330 AACTCGAAT
1 AATTCGAAT
1159339 AATTCGAAT
1 AATTCGAAT
1159348 AATTCGAAT
1 AATTCGAAT
1159357 A
1 A
1159358 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:1159680 original size:23 final size:23
Alignment explanation
Indices: 1159647--1159690 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
1159637 CCTAATTTTT
1159647 TTAAACATTTTCTCTCCAAAATA
1 TTAAACATTTTCTCTCCAAAATA
*
1159670 TTAAACTTTTTCTCTCCAAAA
1 TTAAACATTTTCTCTCCAAAA
1159691 CTTTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (23 bp):
TTAAACATTTTCTCTCCAAAATA
Found at i:1159711 original size:20 final size:21
Alignment explanation
Indices: 1159677--1159716 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1159667 ATATTAAACT
1159677 TTTTCTCTCCAAAACTTTTTA
1 TTTTCTCTCCAAAACTTTTTA
*
1159698 TTTTC-CTCCTAAACTTTTT
1 TTTTCTCTCCAAAACTTTTT
1159717 CTTCTGACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.20, C:0.25, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTCTCTCCAAAACTTTTTA
Found at i:1160027 original size:5 final size:5
Alignment explanation
Indices: 1160017--1160042 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1160007 CTTGAAAATT
1160017 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
1160043 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:1161149 original size:17 final size:17
Alignment explanation
Indices: 1161109--1161141 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1161099 TACAAACAGT
1161109 ATAA-TAATAAATAATA
1 ATAATTAATAAATAATA
*
1161125 ATAATTAATAATTAATA
1 ATAATTAATAAATAATA
1161142 CTAGTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAATTAATAAATAATA
Found at i:1174997 original size:52 final size:52
Alignment explanation
Indices: 1174855--1174990 Score: 200
Period size: 52 Copynumber: 2.6 Consensus size: 52
1174845 GGCTATTATA
** * * *
1174855 GAATGTATATGCGAGTTGTCATTGTATCGAATGCATGAATTATTTTGTGATG
1 GAATGTATATGCGAACTGTCATTGCATCGAATGCATGAACTAGTTTGTGATG
1174907 GAATGTATATGCGAACTGTCATTGCATCGAATGCATGAACTAGTTTGTGATG
1 GAATGTATATGCGAACTGTCATTGCATCGAATGCATGAACTAGTTTGTGATG
* * *
1174959 GAATATATATGCGACCTATCATTGCATCGAAT
1 GAATGTATATGCGAACTGTCATTGCATCGAAT
1174991 ATATGAAATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.35
Consensus pattern (52 bp):
GAATGTATATGCGAACTGTCATTGCATCGAATGCATGAACTAGTTTGTGATG
Found at i:1175459 original size:17 final size:17
Alignment explanation
Indices: 1175439--1175478 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
1175429 CAAATGTGCC
* *
1175439 AGTTGTGCCCATGTGTG
1 AGTTGTGACCATGTGTA
*
1175456 AGTTGTGATCATGTGTA
1 AGTTGTGACCATGTGTA
1175473 AGTTGT
1 AGTTGT
1175479 AACAAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.33, T:0.40
Consensus pattern (17 bp):
AGTTGTGACCATGTGTA
Found at i:1179689 original size:20 final size:20
Alignment explanation
Indices: 1179647--1179769 Score: 84
Period size: 22 Copynumber: 5.8 Consensus size: 20
1179637 CATACATAAT
** *
1179647 ATGCCACAAAGGCTAGTAGA
1 ATGCCACAAAGGCTAAAAAA
*
1179667 ATGCCACAAAGACTAAAAAA
1 ATGCCACAAAGGCTAAAAAA
1179687 ATGTGCCACAAAGGCTAACAAAA
1 A--TGCCACAAAGGCTAA-AAAA
* * *
1179710 TACGCCAAAAAGGCTAACAAA
1 -ATGCCACAAAGGCTAAAAAA
* *
1179731 ATGCATTACAAAGGCTAATAGAAT
1 ATGC--CACAAAGGCTAA-A-AAA
*
1179755 ATGCCATAAAGGCTA
1 ATGCCACAAAGGCTA
1179770 TCGGAATGCC
Statistics
Matches: 80, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
20 20 0.25
21 3 0.04
22 46 0.57
23 4 0.05
24 7 0.09
ACGTcount: A:0.48, C:0.20, G:0.17, T:0.15
Consensus pattern (20 bp):
ATGCCACAAAGGCTAAAAAA
Found at i:1179696 original size:22 final size:22
Alignment explanation
Indices: 1179668--1179769 Score: 87
Period size: 22 Copynumber: 4.6 Consensus size: 22
1179658 GCTAGTAGAA
* *
1179668 TGCCACAAAGACTAAAAAAATG
1 TGCCACAAAGGCTAACAAAATG
*
1179690 TGCCACAAAGGCTAACAAAATA
1 TGCCACAAAGGCTAACAAAATG
* *
1179712 CGCCAAAAAGGCTAACAAAATG
1 TGCCACAAAGGCTAACAAAATG
**** * * *
1179734 CATTACAAAGGCTAATAGAATA
1 TGCCACAAAGGCTAACAAAATG
*
1179756 TGCCATAAAGGCTA
1 TGCCACAAAGGCTA
1179770 TCGGAATGCC
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.16
Consensus pattern (22 bp):
TGCCACAAAGGCTAACAAAATG
Found at i:1182186 original size:16 final size:16
Alignment explanation
Indices: 1182162--1182194 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
1182152 TCTTCTCCCT
1182162 ATAAATATTTTTTTAC
1 ATAAATATTTTTTTAC
*
1182178 ATAATTATTTTTTTAC
1 ATAAATATTTTTTTAC
1182194 A
1 A
1182195 ATTTTTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
ATAAATATTTTTTTAC
Found at i:1182778 original size:51 final size:50
Alignment explanation
Indices: 1182648--1182778 Score: 147
Period size: 51 Copynumber: 2.6 Consensus size: 50
1182638 ATACACGCAG
* * * * *
1182648 TAGCCTTCACATAGTACTACACACGTGATCACGCTTTTCGGTTCACGTAG
1 TAGCCTACACATAGTACTACACACGTGACCACGCTTCTCGGTTCACATAA
* *
1182698 TAGCCTACACATAGTACTACACACATGACCAAGGCCTTCT-GGTTCACATAA
1 TAGCCTACACATAGTACTACACACGTGACC-ACG-CTTCTCGGTTCACATAA
* * *
1182749 TAGCCTGCACTTAGTACTACACATGTGACC
1 TAGCCTACACATAGTACTACACACGTGACC
1182779 GTTATTTATC
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 27 0.40
51 37 0.54
52 4 0.06
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGCCTACACATAGTACTACACACGTGACCACGCTTCTCGGTTCACATAA
Found at i:1193910 original size:113 final size:112
Alignment explanation
Indices: 1193790--1193998 Score: 253
Period size: 113 Copynumber: 1.9 Consensus size: 112
1193780 TCACATTCTA
* * **
1193790 ACTTCGAAAGAATTTGA-TCAAATACATTTTTATTGAT-ACTTTGCAAAAACTATCGATGTCT-C
1 ACTTCGAAAGAATTTGAGT-AAACACATTTTTATCGATGA-TTTGCAAAAACTATCGATACCTAC
* *
1193852 AAGAAAAATTATTGATACCTTTTTCAGTATTGATACCAAAATAGCTTAGTG
64 -A-AAAAATTATTGATACATTTTTCAGCATTGATACCAAAATAGCTTAGTG
* * **
1193903 ACTTCGAAGGAATTTGAGTAAACATATTTTTATCGATGATTTGCAAAAGGTATCGATACCTACAA
1 ACTTCGAAAGAATTTGAGTAAACACATTTTTATCGATGATTTGCAAAAACTATCGATACCTACAA
* *
1193968 AATATTATTGATACATTTTTCGGCATTGATA
66 AAAATTATTGATACATTTTTCAGCATTGATA
1193999 TGAAAAATGA
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
112 28 0.35
113 50 0.62
114 3 0.04
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (112 bp):
ACTTCGAAAGAATTTGAGTAAACACATTTTTATCGATGATTTGCAAAAACTATCGATACCTACAA
AAAATTATTGATACATTTTTCAGCATTGATACCAAAATAGCTTAGTG
Found at i:1203833 original size:22 final size:24
Alignment explanation
Indices: 1203800--1203846 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
1203790 CGTCATACTG
1203800 ATATGTTACCA-T-GTGTCACCATC
1 ATATGTTACCATTAGTGTCA-CATC
1203823 ATAT-TTACCATTAGTGTCACATC
1 ATATGTTACCATTAGTGTCACATC
1203846 A
1 A
1203847 ACACAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 10 0.45
24 6 0.27
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (24 bp):
ATATGTTACCATTAGTGTCACATC
Found at i:1208477 original size:59 final size:59
Alignment explanation
Indices: 1208385--1208509 Score: 223
Period size: 59 Copynumber: 2.1 Consensus size: 59
1208375 CATTGTAAAC
1208385 AAATTATATTTTTTTGTACCAATCAAAACATTTTGTAAAAACGCAAGAGTTTGTTAGTA
1 AAATTATATTTTTTTGTACCAATCAAAACATTTTGTAAAAACGCAAGAGTTTGTTAGTA
* * *
1208444 AAATTATATTTTTTTGTACCAATCGAAACATTTTGTAAAAACGCTATAGTTTGTTAGTA
1 AAATTATATTTTTTTGTACCAATCAAAACATTTTGTAAAAACGCAAGAGTTTGTTAGTA
1208503 AAATTAT
1 AAATTAT
1208510 TAATTGTTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 63 1.00
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (59 bp):
AAATTATATTTTTTTGTACCAATCAAAACATTTTGTAAAAACGCAAGAGTTTGTTAGTA
Found at i:1208609 original size:21 final size:21
Alignment explanation
Indices: 1208573--1208757 Score: 255
Period size: 21 Copynumber: 8.7 Consensus size: 21
1208563 GGTTGGGTTT
1208573 AGGGTTAGGG-TTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTA
*
1208593 AGGGTTAGGGTTTTTAAATTA
1 AGGGTTAGGGTTTTTAAGTTA
*
1208614 AGGGTTAAGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTA
1208635 AGGGTTAGGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTA
* *
1208656 AGGGTTTATGGTTTTTAAGTTG
1 AGGG-TTAGGGTTTTTAAGTTA
***
1208678 TTTGTTAGGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTA
*
1208699 AGGGTTAAGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTA
1208720 AGGGTTTAGGGTTTTTAAGTTAA
1 AGGG-TTAGGGTTTTTAAGTT-A
*
1208743 AGTGTTAGGGTTTTT
1 AGGGTTAGGGTTTTT
1208758 GTTAGGGTTT
Statistics
Matches: 144, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
20 10 0.07
21 88 0.61
22 42 0.29
23 4 0.03
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (21 bp):
AGGGTTAGGGTTTTTAAGTTA
Found at i:1208692 original size:64 final size:64
Alignment explanation
Indices: 1208573--1208757 Score: 257
Period size: 64 Copynumber: 2.9 Consensus size: 64
1208563 GGTTGGGTTT
*
1208573 AGGGTTAGGG-TTTTAAGTTAAGGG-TTAGGGTTTTTAAATTAAGGGTTAAGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTA
* **** *
1208635 AGGGTTAGGGTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTGTTTGTTAGGGTTTTTAAGTTA
1 AGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTA
* * *
1208699 AGGGTTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAAGTGTTAGGGTTTTT
1 AGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTT-AAGGGTTAAGGTTTTT
1208758 GTTAGGGTTT
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
62 10 0.09
63 14 0.13
64 71 0.66
65 13 0.12
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (64 bp):
AGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTA
Found at i:1208851 original size:21 final size:21
Alignment explanation
Indices: 1208827--1208876 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
1208817 ATAAATTAGT
1208827 TTAGGGTTTTTAAATTAAGGG
1 TTAGGGTTTTTAAATTAAGGG
* *
1208848 TTAGAGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAATTAAGGG
1208869 TTAGGGTT
1 TTAGGGTT
1208877 AGGGTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.44
Consensus pattern (21 bp):
TTAGGGTTTTTAAATTAAGGG
Found at i:1209457 original size:17 final size:19
Alignment explanation
Indices: 1209425--1209467 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
1209415 GACTCGAAAA
* *
1209425 AGGAAACATATAA-GGGTT
1 AGGATACATATAAGGGGCT
1209443 AGGATACAT-TAAGGGGCT
1 AGGATACATATAAGGGGCT
1209461 AGGATAC
1 AGGATAC
1209468 GCACCTGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (19 bp):
AGGATACATATAAGGGGCT
Found at i:1211202 original size:11 final size:11
Alignment explanation
Indices: 1211186--1211227 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
1211176 ATTTGGAAGG
1211186 AAATTGAGAGC
1 AAATTGAGAGC
*
1211197 AAATTGAGAAC
1 AAATTGAGAGC
* *
1211208 AATTTGAGAGA
1 AAATTGAGAGC
1211219 AAATTGAGA
1 AAATTGAGA
1211228 AAATAATTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.50, C:0.05, G:0.24, T:0.21
Consensus pattern (11 bp):
AAATTGAGAGC
Found at i:1230559 original size:27 final size:27
Alignment explanation
Indices: 1230540--1230763 Score: 250
Period size: 27 Copynumber: 8.3 Consensus size: 27
1230530 GGTATAACAG
* *
1230540 TCATTGTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCAA
** *
1230567 TCATCCTACCCTATGTGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCAA
*
1230594 TCATTTTACCCTATGAGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCAA
***
1230621 TCATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAA
* ***
1230648 TGATTTTACCCTATAATGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCAA
* *
1230675 TCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCAA
* * ***
1230702 TCATTTTACCCTATAGTGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAA
**
1230729 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAA
1230756 TCATTTTA
1 TCATTTTA
1230764 TTGACCTCTC
Statistics
Matches: 167, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 167 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCAA
Found at i:1230658 original size:81 final size:81
Alignment explanation
Indices: 1230540--1230763 Score: 315
Period size: 81 Copynumber: 2.8 Consensus size: 81
1230530 GGTATAACAG
* * * **
1230540 TCATTGTACCCTATGGGGGTATTTCGATCATCCTACCCTATGTGGGTATTTCAATCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGTGGGTATTTCAATCATTTTACCC
1230605 TATGAGGGTATTTCAA
66 TATGAGGGTATTTCAA
* *
1230621 TCATTTTACCCTATGGGGGTATTTTGGTGATTTTACCCTATAAT-GGTATTTCAATCATTTTACC
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTAT-GTGGGTATTTCAATCATTTTACC
*
1230685 CTATGAGGGTATTTCGA
65 CTATGAGGGTATTTCAA
* * * **
1230702 TCATTTTACCCTATAGTGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTA
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGTGGGTATTTCAATCATTTTA
1230764 TTGACCTCTC
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 125 0.99
82 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGTGGGTATTTCAATCATTTTACCC
TATGAGGGTATTTCAA
Found at i:1235291 original size:165 final size:166
Alignment explanation
Indices: 1235079--1235388 Score: 586
Period size: 165 Copynumber: 1.9 Consensus size: 166
1235069 ATTTAAATTA
*
1235079 ATAAGTATTTATTTTTAATAAATTAATTGCAAATAATAATTTAATATGCATTATATTAATTATTA
1 ATAAGTATTTATTCTTAATAAATTAATTGCAAATAATAATTTAATATGCATTATATTAATTATTA
1235144 ATTGTTGTTAACTCTATATAGAATTAGAATTTGGAATATCTTAATTATTAATTTGTTCTAAGAAT
66 ATTGTTGTTAACTCTATATAGAATTAGAATTTGGAATATCTTAATTATTAATTTGTTCTAAGAAT
1235209 TCTAATTAAACTACTGATTTAATCATATTTTATTCG
131 TCTAATTAAACTACTGATTTAATCATATTTTATTCG
* *
1235245 ATAAGTTTTTA-TCTTAATGAATTAATTGCAAATAATAATTTAATATGCATTATATTAATTATTA
1 ATAAGTATTTATTCTTAATAAATTAATTGCAAATAATAATTTAATATGCATTATATTAATTATTA
1235309 ATTGTTGTTAACTCTATATAGAATTAGAATTTGGAATATCTTAATTATTAATTTGTTCTAAGAAT
66 ATTGTTGTTAACTCTATATAGAATTAGAATTTGGAATATCTTAATTATTAATTTGTTCTAAGAAT
1235374 TCTAATTAAACTACT
131 TCTAATTAAACTACT
1235389 TTTCCTCTCA
Statistics
Matches: 141, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
165 131 0.93
166 10 0.07
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (166 bp):
ATAAGTATTTATTCTTAATAAATTAATTGCAAATAATAATTTAATATGCATTATATTAATTATTA
ATTGTTGTTAACTCTATATAGAATTAGAATTTGGAATATCTTAATTATTAATTTGTTCTAAGAAT
TCTAATTAAACTACTGATTTAATCATATTTTATTCG
Found at i:1235857 original size:8 final size:8
Alignment explanation
Indices: 1235844--1235881 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
1235834 AATGTTAATT
1235844 TTATTTAA
1 TTATTTAA
1235852 TTATTTAA
1 TTATTTAA
1235860 TTATTTAA
1 TTATTTAA
*
1235868 TTTATTGAA
1 -TTATTTAA
1235877 TTATT
1 TTATT
1235882 AATATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (8 bp):
TTATTTAA
Found at i:1235884 original size:16 final size:17
Alignment explanation
Indices: 1235844--1235881 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
1235834 AATGTTAATT
*
1235844 TTATTTAA-TTATTTAA
1 TTATTTAATTTATTGAA
1235860 TTATTTAATTTATTGAA
1 TTATTTAATTTATTGAA
1235877 TTATT
1 TTATT
1235882 AATATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (17 bp):
TTATTTAATTTATTGAA
Found at i:1241298 original size:100 final size:99
Alignment explanation
Indices: 1241117--1241307 Score: 231
Period size: 100 Copynumber: 1.9 Consensus size: 99
1241107 TTGTAGGCTA
* *
1241117 AATGCATTAGCTGCTCATCAACAGATTCATTGGATGGCATTAAAGGAAGACATGCACCTGGACCA
1 AATGCATTAGCTGCTCACCAACAGATTCATTGGACGGCATTAAAGGAAGACATGCACCTGGACCA
1241182 CATGCACCAAGAAGCTGCTGTTTGCTTATAGCTG
66 CATGCACCAAGAAGCTGCTGTTTGCTTATAGCTG
* * * * * * * * *
1241216 AATGTATTGGCTGCTCACCAATAGGTTCATTGGACGTCAGTTAAGGGAGGACATGCGCTTGGACA
1 AATGCATTAGCTGCTCACCAACAGATTCATTGGACGGCA-TTAAAGGAAGACATGCACCTGGAC-
* * *
1241281 TATATGCACCAAG-AGCTGTTGTTTGCT
64 CACATGCACCAAGAAGCTGCTGTTTGCT
1241308 CCCTCCCAAG
Statistics
Matches: 76, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
99 32 0.42
100 33 0.43
101 11 0.14
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (99 bp):
AATGCATTAGCTGCTCACCAACAGATTCATTGGACGGCATTAAAGGAAGACATGCACCTGGACCA
CATGCACCAAGAAGCTGCTGTTTGCTTATAGCTG
Found at i:1243519 original size:104 final size:104
Alignment explanation
Indices: 1243339--1243589 Score: 493
Period size: 104 Copynumber: 2.4 Consensus size: 104
1243329 CTACAAAACC
*
1243339 TTACACAAGCTAATGGTAGCGTTGAAGATTATTACAAGGAAATGGAGATTGCCATGATTCGAGCT
1 TTACACAAGCTAATGGTAGTGTTGAAGATTATTACAAGGAAATGGAGATTGCCATGATTCGAGCT
1243404 GATGTCGAGGAGGACCGGGAGGCAACCATGGTTAGATTA
66 GATGTCGAGGAGGACCGGGAGGCAACCATGGTTAGATTA
1243443 TTACACAAGCTAATGGTAGTGTTGAAGATTATTACAAGGAAATGGAGATTGCCATGATTCGAGCT
1 TTACACAAGCTAATGGTAGTGTTGAAGATTATTACAAGGAAATGGAGATTGCCATGATTCGAGCT
1243508 GATGTCGAGGAGGACCGGGAGGCAACCATGGTTAGATTA
66 GATGTCGAGGAGGACCGGGAGGCAACCATGGTTAGATTA
1243547 TTACACAAGCTAATGGTAGTGTTGAAGATTATTACAAGGAAAT
1 TTACACAAGCTAATGGTAGTGTTGAAGATTATTACAAGGAAAT
1243590 TGGGATATTG
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 146 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (104 bp):
TTACACAAGCTAATGGTAGTGTTGAAGATTATTACAAGGAAATGGAGATTGCCATGATTCGAGCT
GATGTCGAGGAGGACCGGGAGGCAACCATGGTTAGATTA
Found at i:1248409 original size:51 final size:51
Alignment explanation
Indices: 1248329--1248430 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
1248319 GAGATTTAGT
* * *
1248329 GTGATGCCTCAGGTATAGGTATTGGGGCTGTGTTGACTCAAGATGGGCATC
1 GTGATGCCTCAGGTATAGGTATTGAGGCTGTGCTGACTCAAGATAGGCATC
1248380 GTGATGCCTCAGGTATAGGTATTGAGGCTGTGCTGACTCAAGATAGGCATC
1 GTGATGCCTCAGGTATAGGTATTGAGGCTGTGCTGACTCAAGATAGGCATC
1248431 CTATAGCCTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (51 bp):
GTGATGCCTCAGGTATAGGTATTGAGGCTGTGCTGACTCAAGATAGGCATC
Found at i:1256234 original size:13 final size:13
Alignment explanation
Indices: 1256216--1256240 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1256206 TTGTCGTGTT
1256216 ATTTAGTTAATTA
1 ATTTAGTTAATTA
1256229 ATTTAGTTAATT
1 ATTTAGTTAATT
1256241 TTAGTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
ATTTAGTTAATTA
Found at i:1264875 original size:23 final size:22
Alignment explanation
Indices: 1264810--1264875 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 22
1264800 CGGCTTTACA
*
1264810 TTTATTTGTTTTATTTATG-TTAT
1 TTTA-TTGTTTTATTT-TGATTTT
*
1264833 TTT-TTGTTGTACTTTT-ATTTT
1 TTTATTGTTTTA-TTTTGATTTT
1264854 TTTAGTTGTTTTATTTTGATTT
1 TTTA-TTGTTTTATTTTGATTT
1264876 GTGATACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
21 14 0.40
22 7 0.20
23 14 0.40
ACGTcount: A:0.14, C:0.02, G:0.11, T:0.74
Consensus pattern (22 bp):
TTTATTGTTTTATTTTGATTTT
Found at i:1267584 original size:13 final size:13
Alignment explanation
Indices: 1267566--1267590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1267556 TGTCGTTTTC
1267566 TTTAGTTAATTAA
1 TTTAGTTAATTAA
1267579 TTTAGTTAATTA
1 TTTAGTTAATTA
1267591 TAGTTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTAGTTAATTAA
Found at i:1271157 original size:14 final size:15
Alignment explanation
Indices: 1271138--1271169 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
1271128 GTGGTTATAG
1271138 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
1271152 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
1271167 TTA
1 TTA
1271170 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:1274096 original size:40 final size:40
Alignment explanation
Indices: 1274051--1274247 Score: 234
Period size: 40 Copynumber: 4.9 Consensus size: 40
1274041 GAATTTAGGA
* * * *
1274051 GTATCGTAGTACAAATAGGGGCACGTATGTGCATTCAGGG
1 GTATCGAAGTACAAACAAGGGCACTTATGTGCATTCAGGG
* ** * *
1274091 GTATCGAAGTACAAATAAAAGCATTTAGGTGCATTCAGGG
1 GTATCGAAGTACAAACAAGGGCACTTATGTGCATTCAGGG
* * * *
1274131 GTACCAAAGTACAAACATGGGCACTTATGTGCATTTAGGG
1 GTATCGAAGTACAAACAAGGGCACTTATGTGCATTCAGGG
* *
1274171 GTATCAAAGTACAAACAGGGGCACTTATGTGCATTCAGGG
1 GTATCGAAGTACAAACAAGGGCACTTATGTGCATTCAGGG
*
1274211 GTA-CAGAAGTACAAACAATGGCACTTATGTGCATTCA
1 GTATC-GAAGTACAAACAAGGGCACTTATGTGCATTCA
1274248 TATATATACT
Statistics
Matches: 134, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 133 0.99
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (40 bp):
GTATCGAAGTACAAACAAGGGCACTTATGTGCATTCAGGG
Found at i:1279621 original size:21 final size:21
Alignment explanation
Indices: 1279595--1279636 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1279585 TAAAAAATCA
*
1279595 AAATTTACATTAA-ATAATTTT
1 AAATTTAAATTAATAT-ATTTT
1279616 AAATTTAAATTAATATATTTT
1 AAATTTAAATTAATATATTTT
1279637 CATTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AAATTTAAATTAATATATTTT
Found at i:1281417 original size:30 final size:30
Alignment explanation
Indices: 1281381--1281460 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
1281371 TAACTTTGAA
* *
1281381 ATAATGTCAGCTTATGTGAGCAATAC-AATT
1 ATAATGTCAGCTTGTGTGAGCAACACTAA-T
* *
1281411 ATAATGTTAGCTTGTGTGAGCAACCCTAAT
1 ATAATGTCAGCTTGTGTGAGCAACACTAAT
*
1281441 ATATTGTCAGCTTGTGTGAG
1 ATAATGTCAGCTTGTGTGAG
1281461 TAATTTATTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 41 0.95
31 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (30 bp):
ATAATGTCAGCTTGTGTGAGCAACACTAAT
Found at i:1296561 original size:30 final size:30
Alignment explanation
Indices: 1296504--1296561 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
1296494 CTAGGCATTT
** **
1296504 CCACACAGGCTAGCCACAGGCTTATGTGAG
1 CCACACAGGCTAGCCACACACCCATGTGAG
1296534 CCACACAGGCTAGCCACACACCCATGTG
1 CCACACAGGCTAGCCACACACCCATGTG
1296562 TCAGCCCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.36, G:0.22, T:0.14
Consensus pattern (30 bp):
CCACACAGGCTAGCCACACACCCATGTGAG
Found at i:1298169 original size:3 final size:3
Alignment explanation
Indices: 1298161--1298195 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
1298151 GTAGATCTAC
1298161 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1298196 GTTGTTGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1298200 original size:3 final size:3
Alignment explanation
Indices: 1298194--1298299 Score: 203
Period size: 3 Copynumber: 35.3 Consensus size: 3
1298184 ATTATTATTA
1298194 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1298242 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
*
1298290 TTG TTT TTG T
1 TTG TTG TTG T
1298300 AATATTCAAT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 101 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:1300964 original size:3 final size:3
Alignment explanation
Indices: 1300958--1301002 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
1300948 GGTTTCGACA
* *
1300958 ATT ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1301003 GTTAAGAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:1303324 original size:25 final size:26
Alignment explanation
Indices: 1303289--1303349 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
1303279 TACATCTTTG
*
1303289 CATTCATTTTTGAACTAA-TATTTTTC
1 CATTC-TTTTTGAAATAATTATTTTTC
* *
1303315 CATTCTTTTTTAAATAATTATTTTTT
1 CATTCTTTTTGAAATAATTATTTTTC
1303341 CATTCTTTT
1 CATTCTTTT
1303350 AGATTTTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 10 0.32
26 21 0.68
ACGTcount: A:0.25, C:0.13, G:0.02, T:0.61
Consensus pattern (26 bp):
CATTCTTTTTGAAATAATTATTTTTC
Found at i:1304119 original size:5 final size:5
Alignment explanation
Indices: 1304118--1304150 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
1304108 AAAAAAACAA
*
1304118 AAAAC AAAAA AAAAC AAAAC AAAAC AAAA- AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
1304151 GGGAAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:1304121 original size:10 final size:10
Alignment explanation
Indices: 1304105--1304150 Score: 67
Period size: 10 Copynumber: 4.7 Consensus size: 10
1304095 GAAATATTTC
1304105 AAAAAAAA-A
1 AAAAAAAACA
*
1304114 ACAAAAAACA
1 AAAAAAAACA
1304124 AAAAAAAACA
1 AAAAAAAACA
*
1304134 AAACAAAACA
1 AAAAAAAACA
1304144 AAAAAAA
1 AAAAAAA
1304151 GGGAAAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
9 7 0.22
10 25 0.78
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:1304128 original size:15 final size:14
Alignment explanation
Indices: 1304108--1304150 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
1304098 ATATTTCAAA
1304108 AAAAAAACAAAAAAC
1 AAAAAAA-AAAAAAC
1304123 AAAAAAAAACAAAAC
1 AAAAAAAAA-AAAAC
1304138 AAAACAAAAAAAA
1 AAAA-AAAAAAAA
1304151 GGGAAAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.08
15 19 0.73
16 5 0.19
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAC
Found at i:1304128 original size:17 final size:17
Alignment explanation
Indices: 1304105--1304149 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
1304095 GAAATATTTC
1304105 AAAAAAAAAACAAAA-A
1 AAAAAAAAAACAAAACA
1304121 ACAAAAAAAAACAAAACA
1 A-AAAAAAAAACAAAACA
1304139 AAACAAAAAAA
1 AAA-AAAAAAA
1304150 AGGGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.04
17 16 0.62
18 9 0.35
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAACAAAACA
Found at i:1305420 original size:44 final size:44
Alignment explanation
Indices: 1305372--1305603 Score: 189
Period size: 44 Copynumber: 5.3 Consensus size: 44
1305362 AGACACCAGC
1305372 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* * ** * * * *** * *
1305416 CTTGCCTTCCTGCGCCGACAGCGAAGCAGATCAAAGGCATCAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
*
1305460 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* * ** * ** ** * * * *
1305504 CTTGCCTTCCTGCGCCGACAGCGAAGCAAATCGAAGACACCAG-C
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
1305548 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
*
1305592 CTTGCCTTCCTG
1 CTTGCCTCCCTG
1305604 CGCCGACAGC
Statistics
Matches: 131, Mismatches: 53, Indels: 8
0.68 0.28 0.04
Matches are distributed among these distances:
43 35 0.27
44 61 0.47
45 35 0.27
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
Found at i:1305470 original size:88 final size:88
Alignment explanation
Indices: 1305315--1305644 Score: 563
Period size: 88 Copynumber: 3.8 Consensus size: 88
1305305 AGCAGATCAG
* *
1305315 TAAAAA-AGCAGATCTTGCCTTCCTGCACCGACAGAGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1305379 CCCTGGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
1305402 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCAAAGGCATCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
1305467 CCCTAGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
*
1305490 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAAATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1305555 CCCTGGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
1305578 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGTCCCCAGCCTTGTCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1305643 CC
66 CC
1305645 TTGAGCAGCA
Statistics
Matches: 227, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
87 6 0.03
88 221 0.97
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGGTTGCAGCGGAGCAGGT
Found at i:1305666 original size:88 final size:86
Alignment explanation
Indices: 1305352--1306147 Score: 745
Period size: 87 Copynumber: 9.1 Consensus size: 86
1305342 CCGACAGAGA
* * * * ** * *
1305352 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATA-CAGATC
** ** * * *
1305417 TTGCCTTCCTGCGCCGACAGCGA
65 TTATCTTCCTAAGCCG-TAGTGG
* * ** * ** * *
1305440 AGCAGATCAAAGGCATCAGCCTTGCCTCCCT-AGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGA-GCAGCAGTGGAGTAGGTTAAAAATA-CAGAT
** ** * * *
1305504 CTTGCCTTCCTGCGCCGACAGCGA
64 CTTATCTTCCTAAGCCG-TAGTGG
* * * * * ** * *
1305528 AGCAAATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATA-CAGATC
** ** * * *
1305593 TTGCCTTCCTGCGCCGACAGCGA
65 TTATCTTCCTAAGCCG-TAGTGG
* * *
1305616 AGCAGATCGAAGTCCCCAGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATA
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTT-AAAAATACAGATC
* *
1305681 TTATCTCCCTAAGCAGTAGTGG
65 TTATCTTCCTAAGCCGTAGTGG
* * *
1305703 AGCAGATCGAAGTCCCTAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAAAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAA-TACAGATC
* *
1305768 TTATCTCCCTAAGCAGTAGTGG
65 TTATCTTCCTAAGCCGTAGTGG
* * *
1305790 AGCAGATCGAAGTCCCTAGCCATGTCTCCCTGAGCAGCAGAGGAGTAGG-TAGAAAATTACAGAT
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTA-AAAA-TACAGAT
* *
1305854 CTTATCTCCCTAAGCAGTAGTGG
64 CTTATCTTCCTAAGCCGTAGTGG
* * *
1305877 AGCAGATCGAAGTCCCTAGCCATGTCTCCCTGAGCAGCAGAGGAGTAGG-TAGAAAATTACAGAT
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTA-AAAA-TACAGAT
* *
1305941 CTTATCTCCCTAAGCAGTAGTGG
64 CTTATCTTCCTAAGCCGTAGTGG
* *
1305964 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGTAGTAGGTTGAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTT-AAAAATACAGATC
*
1306029 TTATC-TCCTTAAGCGGTAGTGG
65 TTATCTTCC-TAAGCCGTAGTGG
* * *
1306051 AGCAGATCGAAATCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACCGATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTT-AAAAATACAGATC
* *
1306116 TTATCTCCCTAAGCAGTAGTGG
65 TTATCTTCCTAAGCCGTAGTGG
1306138 AGCAGATCGA
1 AGCAGATCGA
1306148 GGATGTGGAG
Statistics
Matches: 649, Mismatches: 50, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
86 7 0.01
87 408 0.63
88 227 0.35
89 7 0.01
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.22
Consensus pattern (86 bp):
AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATACAGATCT
TATCTTCCTAAGCCGTAGTGG
Found at i:1305729 original size:87 final size:87
Alignment explanation
Indices: 1305616--1306147 Score: 893
Period size: 87 Copynumber: 6.1 Consensus size: 87
1305606 CCGACAGCGA
* * * *
1305616 AGCAGATCGAAGTCCCCAGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATA
1 AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
1305681 TTATCTCCCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
* *
1305703 AGCAGATCGAAGTCCCTAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAAAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
1305768 TTATCTCCCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
* *
1305790 AGCAGATCGAAGTCCCTAGCCATGTCTCCCTGAGCAGCAGAGGAGTAGGTAGAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
1305855 TTATCTCCCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
* *
1305877 AGCAGATCGAAGTCCCTAGCCATGTCTCCCTGAGCAGCAGAGGAGTAGGTAGAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
1305942 TTATCTCCCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
* * *
1305964 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGTAGTAGGTTGAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
* *
1306029 TTATCTCCTTAAGCGGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
* * * *
1306051 AGCAGATCGAAATCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACCGATC
1 AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
1306116 TTATCTCCCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
1306138 AGCAGATCGA
1 AGCAGATCGA
1306148 GGATGTGGAG
Statistics
Matches: 425, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 425 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (87 bp):
AGCAGATCGAAGTCCCCAGCCATGTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAAATTACAGATC
TTATCTCCCTAAGCAGTAGTGG
Found at i:1308606 original size:3 final size:3
Alignment explanation
Indices: 1308600--1308658 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
1308590 GGTTTCGACA
* * *
1308600 ATT ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1308648 ATT ATT ATT AT
1 ATT ATT ATT AT
1308659 CACCGAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:1309921 original size:10 final size:9
Alignment explanation
Indices: 1309729--1309938 Score: 65
Period size: 10 Copynumber: 22.4 Consensus size: 9
1309719 CCAATTCAAG
*
1309729 TTTTATGAT
1 TTTTATAAT
*
1309738 TTTT-TTAT
1 TTTTATAAT
1309746 TTTTATAAGT
1 TTTTATAA-T
*
1309756 TTATATCAAT
1 TTTTAT-AAT
* *
1309766 TTTAATACT
1 TTTTATAAT
**
1309775 TTTGATATTTT
1 TTT--TATAAT
1309786 TTTTATAA-
1 TTTTATAAT
*
1309794 TTTTATGACT
1 TTTTAT-AAT
*
1309804 TTTATAGAAT
1 TTT-TATAAT
* *
1309814 TTTAATATGT
1 TTTTATA-AT
*
1309824 TTTTATAAAA
1 TTTTAT-AAT
1309834 TTTTA-AAT
1 TTTTATAAT
1309842 CTGTTTAATTAA-
1 -T-TTT-A-TAAT
1309854 TTTTATAAT
1 TTTTATAAT
1309863 TTTTATAAT
1 TTTTATAAT
*
1309872 TTTTA-AGT
1 TTTTATAAT
*
1309880 TTATATCAAT
1 TTTTAT-AAT
* *
1309890 TGTCAT-AT
1 TTTTATAAT
*
1309898 TTTTTTAAT
1 TTTTATAAT
*
1309907 ATTTAATAAT
1 -TTTTATAAT
*
1309917 TTTTA-CAT
1 TTTTATAAT
1309925 TTTTGATAAT
1 TTTT-ATAAT
1309935 TTTT
1 TTTT
1309939 TTCCTTTTTT
Statistics
Matches: 144, Mismatches: 35, Indels: 43
0.65 0.16 0.19
Matches are distributed among these distances:
8 35 0.24
9 40 0.28
10 54 0.38
11 13 0.09
13 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:1309933 original size:18 final size:17
Alignment explanation
Indices: 1309899--1309938 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
1309889 TTGTCATATT
1309899 TTTTTAATATTTAATAA
1 TTTTTAATATTTAATAA
* *
1309916 TTTTTACATTTTTGATAA
1 TTTTTA-ATATTTAATAA
1309934 TTTTT
1 TTTTT
1309939 TTCCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTTAATATTTAATAA
Found at i:1312071 original size:20 final size:20
Alignment explanation
Indices: 1312048--1312095 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
1312038 TTTAGCTCGG
*
1312048 TTCAGCTCACATGAGTTTAA
1 TTCAGCTCACATGAGCTTAA
1312068 TTCAGCTCACATGAGCTTAA
1 TTCAGCTCACATGAGCTTAA
*
1312088 TTTAGCTC
1 TTCAGCTC
1312096 GTTTGAGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (20 bp):
TTCAGCTCACATGAGCTTAA
Found at i:1313716 original size:70 final size:70
Alignment explanation
Indices: 1313597--1313931 Score: 292
Period size: 70 Copynumber: 4.9 Consensus size: 70
1313587 CCAGATCGCA
* * * ** *
1313597 TCAAGCTCCCAGCTGTACTCTTAAGGCTCGCTGATTTAATATCATGGCCTCCAAAATAGTTAGTG
1 TCAAGCTCTCAACTGTACTCTTAAGGCTCGCTGATTCAATATCGCGGCCTCCAAAATAGTTAGCG
1313662 TGAGC
66 TGAGC
* ** *
1313667 TCAAGCTCTCAATTGTACTCTTAAGGCTCATTGATTCAATATCGCGGCCTCCAAAATTGTTAGC-
1 TCAAGCTCTCAACTGTACTCTTAAGGCTCGCTGATTCAATATCGCGGCCTCCAAAATAGTTAGCG
1313731 --A--
66 TGAGC
* * * * * * *
1313732 -CAAG--CTCAAGTTGTACCCTTAAGGCTTGCTAATTCAATATTGCGGCCTCTAAAATTGTTAGC
1 TCAAGCTCTCAA-CTGTACTCTTAAGGCTCGCTGATTCAATATCGCGGCCTCCAAAATAGTTAGC
***
1313794 ACAAGC
65 GTGAGC
* * * * * *
1313800 TCAAGCTCCCAACTGTACTCTTAAGGCTCGTTGATTCAATATCGCAGCCCCCAAAACAGTTACCG
1 TCAAGCTCTCAACTGTACTCTTAAGGCTCGCTGATTCAATATCGCGGCCTCCAAAATAGTTAGCG
*
1313865 GGAGC
66 TGAGC
* * * * **
1313870 TCAAGCTGC-CAGCTATATTCTTAAGGCTCGCTAATTCAATATTACGGCCTCCAAAATAGTTA
1 TCAAGCT-CTCAACTGTACTCTTAAGGCTCGCTGATTCAATATCGCGGCCTCCAAAATAGTTA
1313932 ACCAACAGTA
Statistics
Matches: 212, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
62 5 0.02
63 45 0.21
64 4 0.02
66 1 0.00
67 1 0.00
69 4 0.02
70 147 0.69
71 5 0.02
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (70 bp):
TCAAGCTCTCAACTGTACTCTTAAGGCTCGCTGATTCAATATCGCGGCCTCCAAAATAGTTAGCG
TGAGC
Found at i:1313768 original size:63 final size:63
Alignment explanation
Indices: 1313674--1313804 Score: 192
Period size: 63 Copynumber: 2.1 Consensus size: 63
1313664 AGCTCAAGCT
* * *
1313674 CTCAA-TTGTACTCTTAAGGCTCATTGATTCAATATCGCGGCCTCCAAAATTGTTAGCACAAG
1 CTCAAGTTGTACCCTTAAGGCTCACTAATTCAATATCGCGGCCTCCAAAATTGTTAGCACAAG
** * *
1313736 CTCAAGTTGTACCCTTAAGGCTTGCTAATTCAATATTGCGGCCTCTAAAATTGTTAGCACAAG
1 CTCAAGTTGTACCCTTAAGGCTCACTAATTCAATATCGCGGCCTCCAAAATTGTTAGCACAAG
1313799 CTCAAG
1 CTCAAG
1313805 CTCCCAACTG
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
62 5 0.08
63 56 0.92
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (63 bp):
CTCAAGTTGTACCCTTAAGGCTCACTAATTCAATATCGCGGCCTCCAAAATTGTTAGCACAAG
Found at i:1316523 original size:131 final size:132
Alignment explanation
Indices: 1316329--1316591 Score: 510
Period size: 131 Copynumber: 2.0 Consensus size: 132
1316319 GTGTGAATTT
1316329 ACTAGTGTAAAAATTTCGTGCTTTAATTTCGCCGTTTGAGTGTCCGATTAAATAAAAAGGATTAA
1 ACTAGTGTAAAAATTTCGTGCTTTAATTTCGCCGTTTGAGTGTCCGATTAAATAAAAAGGATTAA
1316394 ATCGCGTAAAATAAAAATTTAATATTTATTTTTAAAAAGGGGCTGAATAGTGGTTGTTCTTTTAA
66 ATCGCGTAAAATAAAAATTTAATATTTATTTTTAAAAAGGGGCTGAATAGTGGTTGTTCTTTTAA
1316459 TA
131 TA
1316461 ACTAGTGT-AAAATTTCGTGCTTTAATTTCGCCGTTTGAGTGTCCGATTAAATAAAAAGGATTAA
1 ACTAGTGTAAAAATTTCGTGCTTTAATTTCGCCGTTTGAGTGTCCGATTAAATAAAAAGGATTAA
*
1316525 ATCGCGTAAAATAAAAATTTAATATTTTTTTTTAAAAAGGGGCTGAATAGTGGTTGTTCTTTTAA
66 ATCGCGTAAAATAAAAATTTAATATTTATTTTTAAAAAGGGGCTGAATAGTGGTTGTTCTTTTAA
1316590 TA
131 TA
1316592 TGGAGGTTTA
Statistics
Matches: 130, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
131 122 0.94
132 8 0.06
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (132 bp):
ACTAGTGTAAAAATTTCGTGCTTTAATTTCGCCGTTTGAGTGTCCGATTAAATAAAAAGGATTAA
ATCGCGTAAAATAAAAATTTAATATTTATTTTTAAAAAGGGGCTGAATAGTGGTTGTTCTTTTAA
TA
Found at i:1324051 original size:41 final size:41
Alignment explanation
Indices: 1323994--1324280 Score: 574
Period size: 41 Copynumber: 7.0 Consensus size: 41
1323984 AAATAAGATG
1323994 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324035 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324076 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324117 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324158 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324199 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324240 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1 TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
1324281 NNNNNNNNNN
Statistics
Matches: 246, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 246 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTA
Found at i:1326088 original size:21 final size:21
Alignment explanation
Indices: 1326062--1326102 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1326052 ATTCACAATT
1326062 TTAGGTAGGTTGTT-TTTAAAG
1 TTAGGTA-GTTGTTATTTAAAG
1326083 TTAGGTAGTTGTTATTTAAA
1 TTAGGTAGTTGTTATTTAAA
1326103 CACTAATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (21 bp):
TTAGGTAGTTGTTATTTAAAG
Found at i:1327259 original size:30 final size:31
Alignment explanation
Indices: 1327210--1327270 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
1327200 AAGAACACAG
1327210 AACCATCACCGGAACTCCATATCATTACATA
1 AACCATCACCGGAACTCCATATCATTACATA
1327241 AACCATCA-CGCG-ACTCCATATCATTACATA
1 AACCATCACCG-GAACTCCATATCATTACATA
1327271 GTCATTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.38, C:0.33, G:0.07, T:0.23
Consensus pattern (31 bp):
AACCATCACCGGAACTCCATATCATTACATA
Found at i:1332010 original size:16 final size:17
Alignment explanation
Indices: 1331989--1332021 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1331979 GGGTATGCTT
1331989 GTAAATA-TGATTCGCA
1 GTAAATAGTGATTCGCA
*
1332005 GTAAATAGTGGTTCGCA
1 GTAAATAGTGATTCGCA
1332022 TGTGAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (17 bp):
GTAAATAGTGATTCGCA
Found at i:1332605 original size:37 final size:37
Alignment explanation
Indices: 1332564--1332637 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
1332554 ACAGTGTTAA
1332564 AAAGAATGCTTATTAATCCTTTCTTTAAAAACTTGCT
1 AAAGAATGCTTATTAATCCTTTCTTTAAAAACTTGCT
1332601 AAAGAATGCTTATTAATCCTTTCTTTAAAAACTTGCT
1 AAAGAATGCTTATTAATCCTTTCTTTAAAAACTTGCT
1332638 TTAAAAAGGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (37 bp):
AAAGAATGCTTATTAATCCTTTCTTTAAAAACTTGCT
Found at i:1342540 original size:18 final size:18
Alignment explanation
Indices: 1342517--1342560 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
1342507 GCTTATCTTG
*
1342517 CTCATTTGCCTTCTCATT
1 CTCATTTGCATTCTCATT
**
1342535 CTCATTTATATTCTCATT
1 CTCATTTGCATTCTCATT
*
1342553 CTCTTTTG
1 CTCATTTG
1342561 TCCATGACTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.14, C:0.27, G:0.05, T:0.55
Consensus pattern (18 bp):
CTCATTTGCATTCTCATT
Found at i:1342822 original size:27 final size:27
Alignment explanation
Indices: 1342792--1342848 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
1342782 GGTTCAACTA
*
1342792 GTTTAGCAATGTTTGGCTCCACTCTCG
1 GTTTAGCAATATTTGGCTCCACTCTCG
*** *
1342819 GTTTAGGGCTATTTGGTTCCACTCTCG
1 GTTTAGCAATATTTGGCTCCACTCTCG
1342846 GTT
1 GTT
1342849 CAAGACTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.12, C:0.23, G:0.25, T:0.40
Consensus pattern (27 bp):
GTTTAGCAATATTTGGCTCCACTCTCG
Found at i:1342860 original size:27 final size:27
Alignment explanation
Indices: 1342801--1342864 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
1342791 AGTTTAGCAA
* * * *
1342801 TGTTTGGCTCCACTCTCGGTTTAGGGC
1 TGTTTGGTTCCACTCTCGGTTCAAGAC
*
1342828 TATTTGGTTCCACTCTCGGTTCAAGAC
1 TGTTTGGTTCCACTCTCGGTTCAAGAC
1342855 TGTTTGGTTC
1 TGTTTGGTTC
1342865 TCCTTCAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.11, C:0.23, G:0.25, T:0.41
Consensus pattern (27 bp):
TGTTTGGTTCCACTCTCGGTTCAAGAC
Found at i:1351266 original size:43 final size:42
Alignment explanation
Indices: 1351046--1351353 Score: 431
Period size: 42 Copynumber: 7.3 Consensus size: 42
1351036 GTTTTATGAG
* * *
1351046 AAGCGCCGCTAAAGGT-TTGTTCTATAGCGACGTTTGTGAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAA
* *
1351087 AAGCGCCGCTAAAGATCTTGATCTATAGCGGCGTTTGTCGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAA
*
1351129 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAA
* * *
1351171 AAGCACCGCTAAAGATCCTGATCTATAGCGGCGTTTG-GGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAA
* *
1351212 AAGCGCCGCTAAAGGTCTTGGTCTATAGCGACGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGT-GGAA
** * *
1351255 AAGCGCCGCTAAAGGTCACGGTTTATAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGT-GGAA
*
1351298 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCATTTGTGGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAA
*
1351340 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
1351354 TTAGCGACAC
Statistics
Matches: 237, Mismatches: 27, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
41 50 0.21
42 111 0.47
43 76 0.32
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (42 bp):
AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAA
Found at i:1352003 original size:51 final size:51
Alignment explanation
Indices: 1351907--1352409 Score: 510
Period size: 51 Copynumber: 10.1 Consensus size: 51
1351897 CACAAGGAAG
* * * * ** *
1351907 AGTT-CATTTGTGAACTGTCTAAACTAAGTGTGTGCGTACTAATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* *
1351957 AGTTCCATGTGTGAACTATCTAAACAAAGTATAT--GTG-T-ATT-GATT-
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* **
1352002 A--T--A-GTGTGAACTATCTAAACAAAGTATGTGTGTACTGATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* * * * * * *
1352048 AGTTTCATTTGTGAATTGTCTAAACCAAGTATGTGTGTGTTAATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* * *
1352099 AGCTCCATTTGTGAACTATCTAAACAAAGTATGTGCATGTTGATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* * * * * * *
1352150 AGTTCCATGTGTGAATTGTCTAAACCAGGTATGTGCATGCTGGTTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* * * *
1352201 AGTTCTATGTGTGAACTATCTAAACCAAGTATGTGCGTGCTAATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* * * *
1352252 AGCTCCATTTGTGAACTGTCTAAACAAAGTATGTGCGTGTTGATAATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
* * *
1352303 AGTTCCATGTGTGAATTGTCTAAA-ACAAGTGTGTGCGTGTTGATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACA-AAGTATGTGCGTGTTGATTATATTA
* * * *
1352354 AGTTCAATGTGTTAACTATCTAAAAAAAGTATGTGCGTGCTGATTATATTA
1 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
1352405 AGTTC
1 AGTTC
1352410 TATAAGCAAA
Statistics
Matches: 380, Mismatches: 59, Indels: 27
0.82 0.13 0.06
Matches are distributed among these distances:
40 25 0.07
41 1 0.00
42 2 0.01
43 2 0.01
44 3 0.01
45 4 0.01
46 4 0.01
47 3 0.01
48 2 0.01
49 2 0.01
50 6 0.02
51 325 0.86
52 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (51 bp):
AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
Found at i:1352009 original size:40 final size:40
Alignment explanation
Indices: 1351965--1352044 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
1351955 TAAGTTCCAT
*
1351965 GTGTGAACTATCTAAACAAAGTATATGTGTATTGATTATA
1 GTGTGAACTATCTAAACAAAGTATATGTGTACTGATTATA
*
1352005 GTGTGAACTATCTAAACAAAGTATGTGTGTACTGATTATA
1 GTGTGAACTATCTAAACAAAGTATATGTGTACTGATTATA
1352045 TTAAGTTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (40 bp):
GTGTGAACTATCTAAACAAAGTATATGTGTACTGATTATA
Found at i:1352587 original size:25 final size:25
Alignment explanation
Indices: 1352559--1352606 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
1352549 AGCTGTGGAA
* *
1352559 TATGTGAGTTGTGATATGTGAGCTC
1 TATGTAAGTGGTGATATGTGAGCTC
* *
1352584 TATGTAAGTGGTTATGTGTGAGC
1 TATGTAAGTGGTGATATGTGAGC
1352607 CAACAAAGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.21, C:0.06, G:0.33, T:0.40
Consensus pattern (25 bp):
TATGTAAGTGGTGATATGTGAGCTC
Found at i:1354417 original size:67 final size:68
Alignment explanation
Indices: 1354269--1354435 Score: 176
Period size: 67 Copynumber: 2.5 Consensus size: 68
1354259 AGGTATAGGA
* * ** * *
1354269 CCATAG-TTAGACTATGCCAACCAATGGAGTCTGCCAGGACATTAAAACATGTGGTGTACTATGT
1 CCATAGCTT-GACTATGACAACAAATATAGTCTACCAGGACATTAAAACATGGGGTGTACTATGT
1354333 AAGT
65 AAGT
* * * * * * *
1354337 CCATTGCTCGACTATGGCAACAAATATAGTCTACCATGACATT-AAATATGGGGTGTGCTGTGTA
1 CCATAGCTTGACTATGACAACAAATATAGTCTACCAGGACATTAAAACATGGGGTGTACTATGTA
1354401 AGT
66 AGT
* *
1354404 CCATAGCTTGACTATGACAATAAAGATAGTCT
1 CCATAGCTTGACTATGACAACAAATATAGTCT
1354436 GCTGAGAAAA
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
67 47 0.58
68 33 0.41
69 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (68 bp):
CCATAGCTTGACTATGACAACAAATATAGTCTACCAGGACATTAAAACATGGGGTGTACTATGTA
AGT
Found at i:1354455 original size:67 final size:67
Alignment explanation
Indices: 1354312--1354455 Score: 146
Period size: 67 Copynumber: 2.1 Consensus size: 67
1354302 CCAGGACATT
* * * * *
1354312 AAAACATGTGGTGTACTATGTAAGTCCATTGCTCGACTATGGCAACAAATATAGTCTACCATGAC
1 AAAACATGGGGTGTACTATGTAAGTCCATAGCTCGACTATGACAACAAAGATAGTCTACCATGAA
*
1354377 AT
66 AA
* * * * * * * *
1354379 TAAATATGGGGTGTGCTGTGTAAGTCCATAGCTTGACTATGACAATAAAGATAGTCTGCTGA-GA
1 AAAACATGGGGTGTACTATGTAAGTCCATAGCTCGACTATGACAACAAAGATAGTCTAC-CATGA
1354443 AAA
65 AAA
1354446 AAAACATGGG
1 AAAACATGGG
1354456 TGGGAAATGA
Statistics
Matches: 60, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
67 59 0.98
68 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (67 bp):
AAAACATGGGGTGTACTATGTAAGTCCATAGCTCGACTATGACAACAAAGATAGTCTACCATGAA
AA
Found at i:1366364 original size:78 final size:78
Alignment explanation
Indices: 1366233--1366378 Score: 204
Period size: 78 Copynumber: 1.9 Consensus size: 78
1366223 GATCTTAGCC
*
1366233 ATCGCTAAATAATGATTCGATGCTACTCACTCAAGATGTCGAGAATCCACAATTTATGTTGGATC
1 ATCGCTAAATAATGATTCGATGCTACTCACTCAAGATGTCAAGAATCCACAATTTATGTTGGATC
1366298 TCAACCACCACGG
66 TCAACCACCACGG
* * * * * * *
1366311 ATCGCTAAATAA-GAATTTGATGTTTCTCACTCATGTTTTCAAGAATCCGCAATTTATGTTGGAT
1 ATCGCTAAATAATG-ATTCGATGCTACTCACTCAAGATGTCAAGAATCCACAATTTATGTTGGAT
1366375 CTCA
65 CTCA
1366379 GCTAGCGAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
77 1 0.02
78 58 0.98
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (78 bp):
ATCGCTAAATAATGATTCGATGCTACTCACTCAAGATGTCAAGAATCCACAATTTATGTTGGATC
TCAACCACCACGG
Found at i:1372280 original size:21 final size:21
Alignment explanation
Indices: 1372254--1372305 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
1372244 GTAGTGGCGA
* **
1372254 TGAGATTAGTTATTGTAGTGG
1 TGAGATTAGATATTGTAGCAG
*
1372275 TGAGATTGGATATTGTAGCAG
1 TGAGATTAGATATTGTAGCAG
1372296 TGAGATTAGA
1 TGAGATTAGA
1372306 AAAAATGGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.33, T:0.37
Consensus pattern (21 bp):
TGAGATTAGATATTGTAGCAG
Found at i:1383814 original size:242 final size:244
Alignment explanation
Indices: 1383342--1383834 Score: 695
Period size: 242 Copynumber: 2.0 Consensus size: 244
1383332 GAAACATGTT
*
1383342 TGAAAACTGCCTACCGAACCCAAAGTCTATTTACTACATGGGTAGTCAGAATCAAAATAGAAGTG
1 TGAAAACTGCCTACCAAACCCAAAGTCTATTTACTACATGGGTAGTCAGAATCAAAATAGAAGTG
* * * *
1383407 GTCTGGTCTCGCAGTCAAACTTTTATAATCCTTCATAGAGAAACCACCAAAATTTCTTATGGAGT
66 GTCAGGTATCGCAGTCAAACTTCTATAATCCTTAATAGAGAAACCACCAAAATTTC---T---GT
* **
1383472 AATGAAGGAGCTGGCCCTAACAACACTTATATTTACTCTAGACCAAATCAACAACCAGGCTTTAT
125 AATGAAGGAGCTGGCCCTAACAACACTTACATGCACTCTAGACCAAATCAACAACCAGGCTTTAT
* * * *
1383537 TCAATAAGTTCAAAACTTGCCACCAACTGAACCTTCGAATAGTCTTAAGAATTTG
190 TCAACAAGTTCAAAACTTGCCAACAACTAAACCTTCGAATAGTATTAAGAATTTG
* * *
1383592 TGAAAACTGCCTA-CAAACCCAATGTCTATTTACTACATGGGTAGTCAGAATTAGAATAGAAGTG
1 TGAAAACTGCCTACCAAACCCAAAGTCTATTTACTACATGGGTAGTCAGAATCAAAATAGAAGTG
* * * *
1383656 GTCCAGG-ATCGTAGTCAATCTTCTATAATCCTTAATGGAGAAACCACCCAAATTTC-GTAATGA
66 GT-CAGGTATCGCAGTCAAACTTCTATAATCCTTAATAGAGAAACCACCAAAATTTCTGTAATGA
* * *
1383719 TGGAGCTGGCCCTAACAACACTTACATGCACTCTAGACCAAATCAACAGCCAGGGTTTATTCAAC
130 AGGAGCTGGCCCTAACAACACTTACATGCACTCTAGACCAAATCAACAACCAGGCTTTATTCAAC
*
1383784 AAGTTCAAAACTTGCCAACAACTAAACCTTCGAATAGTATTGAGAATTTG
195 AAGTTCAAAACTTGCCAACAACTAAACCTTCGAATAGTATTAAGAATTTG
1383834 T
1 T
1383835 TGAAGGCTTA
Statistics
Matches: 219, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
242 112 0.51
249 91 0.42
250 16 0.07
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (244 bp):
TGAAAACTGCCTACCAAACCCAAAGTCTATTTACTACATGGGTAGTCAGAATCAAAATAGAAGTG
GTCAGGTATCGCAGTCAAACTTCTATAATCCTTAATAGAGAAACCACCAAAATTTCTGTAATGAA
GGAGCTGGCCCTAACAACACTTACATGCACTCTAGACCAAATCAACAACCAGGCTTTATTCAACA
AGTTCAAAACTTGCCAACAACTAAACCTTCGAATAGTATTAAGAATTTG
Found at i:1389876 original size:18 final size:18
Alignment explanation
Indices: 1389855--1389896 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1389845 GTCGAGTGGG
* *
1389855 CCACATGGGTGTGCGGGC
1 CCACATGGGCGTACGGGC
*
1389873 CCACACGGGCGTACGGGC
1 CCACATGGGCGTACGGGC
1389891 CCACAT
1 CCACAT
1389897 AAGCACACAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.36, G:0.36, T:0.12
Consensus pattern (18 bp):
CCACATGGGCGTACGGGC
Found at i:1396681 original size:25 final size:25
Alignment explanation
Indices: 1396647--1396782 Score: 129
Period size: 25 Copynumber: 5.5 Consensus size: 25
1396637 GTTACCTAGG
1396647 AAGCCTTTGTGGCTAATCTTGTGAA
1 AAGCCTTTGTGGCTAATCTTGTGAA
*
1396672 AAGCCTTTGTGGCGTATTATCTAG-G--
1 AAGCCTTTGTGGC-TA--ATCTTGTGAA
* * *
1396697 AAGCCTTTGTTGCTAATGTTGAGAA
1 AAGCCTTTGTGGCTAATCTTGTGAA
** * *
1396722 AAGCCTTTGTGGCGT-ATAATCTGAG
1 AAGCCTTTGTGGC-TAATCTTGTGAA
1396747 AAGCCTTTGTGGCTAATCTTGTG-A
1 AAGCCTTTGTGGCTAATCTTGTGAA
1396771 AAGCCTTTGTGG
1 AAGCCTTTGTGG
1396783 TGAAGTACTA
Statistics
Matches: 89, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
22 4 0.04
23 1 0.01
24 15 0.17
25 60 0.67
26 3 0.03
27 1 0.01
28 5 0.06
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.35
Consensus pattern (25 bp):
AAGCCTTTGTGGCTAATCTTGTGAA
Found at i:1396723 original size:50 final size:50
Alignment explanation
Indices: 1396642--1396782 Score: 223
Period size: 50 Copynumber: 2.8 Consensus size: 50
1396632 GACAGGTTAC
*
1396642 CTAGGAAGCCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATTAT
1 CTAGGAAGCCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATAAT
* * *
1396692 CTAGGAAGCCTTTGTTGCTAATGTTGAGAAAAGCCTTTGTGGCGTATAAT
1 CTAGGAAGCCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATAAT
1396742 CT-GAGAAGCCTTTGTGGCTAATCTTGTG-AAAGCCTTTGTGG
1 CTAG-GAAGCCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGG
1396783 TGAAGTACTA
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
49 14 0.17
50 69 0.83
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.35
Consensus pattern (50 bp):
CTAGGAAGCCTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATAAT
Found at i:1399080 original size:27 final size:26
Alignment explanation
Indices: 1399021--1399218 Score: 191
Period size: 27 Copynumber: 7.4 Consensus size: 26
1399011 CCTCAAAATA
* * * *
1399021 GGTAAAATGACCAAAATACCCCAATAC
1 GGTAAAATGATCGAAATACCCC-CTAG
*
1399048 GATAAAATGATCGAAATACCCCTCTAG
1 GGTAAAATGATCGAAATACCCC-CTAG
*
1399075 GGTAAAATGATCGAAATACCCTCATAG
1 GGTAAAATGATCGAAATACCC-CCTAG
* *
1399102 GGTAAATTGAACGAAATACCCCCATAG
1 GGTAAAATGATCGAAATACCCCC-TAG
* * *
1399129 GGT-AAATCGATCAAAATACACCCAAG
1 GGTAAAAT-GATCGAAATACCCCCTAG
* *
1399155 GGTAAAATGATCGAAATGTCCCCATAG
1 GGTAAAATGATCGAAAT-ACCCCCTAG
* *
1399182 GGTAAAATGATAGAAATACCCCTATAG
1 GGTAAAATGATCGAAATACCCC-CTAG
1399209 GGTAAAATGA
1 GGTAAAATGA
1399219 CTGTTATACC
Statistics
Matches: 142, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
26 21 0.15
27 120 0.85
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.20
Consensus pattern (26 bp):
GGTAAAATGATCGAAATACCCCCTAG
Found at i:1399092 original size:54 final size:52
Alignment explanation
Indices: 1399021--1399218 Score: 222
Period size: 54 Copynumber: 3.7 Consensus size: 52
1399011 CCTCAAAATA
* * *
1399021 GGTAAAATGACCAAAATACCCCAATACGATAAAATGATCGAAATACCCCTCTAG
1 GGTAAAATGATCAAAATACCCC-ATAGGGTAAAATGATCGAAATACCCC-CTAG
* * *
1399075 GGTAAAATGATCGAAATACCCTCATAGGGTAAATTGAACGAAATACCCCCATAG
1 GGTAAAATGATCAAAATACCC-CATAGGGTAAAATGATCGAAATACCCCC-TAG
* *
1399129 GGT-AAATCGATCAAAATACACCCA-AGGGTAAAATGATCGAAATGTCCCCATAG
1 GGTAAAAT-GATCAAAATAC-CCCATAGGGTAAAATGATCGAAAT-ACCCCCTAG
1399182 GGTAAAATGAT-AGAAATACCCCTATAGGGTAAAATGA
1 GGTAAAATGATCA-AAATACCCC-ATAGGGTAAAATGA
1399219 CTGTTATACC
Statistics
Matches: 124, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
52 4 0.03
53 38 0.31
54 79 0.64
55 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.20
Consensus pattern (52 bp):
GGTAAAATGATCAAAATACCCCATAGGGTAAAATGATCGAAATACCCCCTAG
Found at i:1404953 original size:44 final size:41
Alignment explanation
Indices: 1404905--1405012 Score: 136
Period size: 36 Copynumber: 2.7 Consensus size: 41
1404895 TTTACATGGG
1404905 CATAAGTATTTATATTTTCCACTTTACAAATAAGTTACACCATT
1 CATAAGTATTTATATTTT-CACTTTAC-AA-AAGTTACACCATT
*
1404949 CATAAGTATTTATATTTT--GTTT---AAAGTTACACCATT
1 CATAAGTATTTATATTTTCACTTTACAAAAGTTACACCATT
1404985 CATAAGTATTTATATTTTTCACTTTACA
1 CATAAGTATTTATA-TTTTCACTTTACA
1405013 TAGCTCGTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
36 27 0.48
37 5 0.09
39 3 0.05
41 3 0.05
44 18 0.32
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (41 bp):
CATAAGTATTTATATTTTCACTTTACAAAAGTTACACCATT
Found at i:1405698 original size:22 final size:20
Alignment explanation
Indices: 1405659--1405698 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
1405649 TGAAAGAAAA
*
1405659 TAAATAAAAATATGGAAGAT
1 TAAATAAAAATAAGGAAGAT
1405679 TAAAGTAAAAATAAGTGAAG
1 TAAA-TAAAAATAAG-GAAG
1405699 TGTGAGAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (20 bp):
TAAATAAAAATAAGGAAGAT
Found at i:1416046 original size:34 final size:34
Alignment explanation
Indices: 1416003--1416072 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
1415993 GTTTGTTTTA
1416003 AATTAAGAAAGCTAGAAGAAAATATAGAACAATG
1 AATTAAGAAAGCTAGAAGAAAATATAGAACAATG
1416037 AATTAAGAAAGCTAGAAGAAAATATAGAACAATG
1 AATTAAGAAAGCTAGAAGAAAATATAGAACAATG
1416071 AA
1 AA
1416073 CACAACAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (34 bp):
AATTAAGAAAGCTAGAAGAAAATATAGAACAATG
Found at i:1434560 original size:45 final size:46
Alignment explanation
Indices: 1434510--1434597 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
1434500 TTTAATTTTG
*
1434510 AGAAAACCACATTCATTTCCAAATGATTT-CATTTCTCTATTTCAA
1 AGAAAACCACAATCATTTCCAAATGATTTCCATTTCTCTATTTCAA
* *** *
1434555 AGAAAACCATAATCATTTTTTAATGTTTTCCATTTCTCTATTT
1 AGAAAACCACAATCATTTCCAAATGATTTCCATTTCTCTATTT
1434598 ATATTCATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 23 0.64
46 13 0.36
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (46 bp):
AGAAAACCACAATCATTTCCAAATGATTTCCATTTCTCTATTTCAA
Found at i:1440016 original size:54 final size:54
Alignment explanation
Indices: 1439943--1440222 Score: 393
Period size: 54 Copynumber: 5.2 Consensus size: 54
1439933 ACCCCAAAAT
* *
1439943 AGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGATCGAAATACCCCAATA
1 AGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATA
* * *
1439997 AGGTAAAATGATCAAAATA-CCCTCATAGGGTAAAATGGCCGAAATAACCCCATA
1 AGGTAAAATGACCAAAATACCCCT-ATAGGGTAAAATGACCGAAATACCCCCATA
* * * *
1440051 GGGTAAAATAACAAAAATACCCCTATAGGGTAAAATGATCGAAATACCCCCATA
1 AGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATA
* *
1440105 AGGTAAAATGACCAAAATACCCCAATAGGGTAAAATAACCGAAATACCCCCAT-
1 AGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATA
* * * *
1440158 AGGGAAAATGACTAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATA
1 AGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATA
*
1440212 GGGTAAAATGA
1 AGGTAAAATGA
1440223 TTGTTATACC
Statistics
Matches: 198, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 52 0.26
54 142 0.72
55 4 0.02
ACGTcount: A:0.46, C:0.21, G:0.16, T:0.17
Consensus pattern (54 bp):
AGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATA
Found at i:1440234 original size:27 final size:27
Alignment explanation
Indices: 1439944--1440222 Score: 353
Period size: 27 Copynumber: 10.4 Consensus size: 27
1439934 CCCCAAAATA
* *
1439944 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
1439971 GGTAAAATGATCGAAATACCCCAATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
1439998 GGTAAAATGATCAAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
1440025 GGTAAAATGGCCGAAATAACCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** *
1440052 GGTAAAATAACAAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
1440079 GGTAAAATGATCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
1440106 GGTAAAATGACCAAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
1440133 GGTAAAATAACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
**
1440160 GG-AAAATGACTAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
1440186 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
1440213 GGTAAAATGA
1 GGTAAAATGA
1440223 TTGTTATACC
Statistics
Matches: 215, Mismatches: 36, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.11
27 192 0.89
ACGTcount: A:0.46, C:0.21, G:0.16, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:1447339 original size:34 final size:34
Alignment explanation
Indices: 1447301--1447369 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
1447291 CGGTCTTGGT
1447301 TTTCAATTCACTTGTAAATCTGTTAAATTGATGC
1 TTTCAATTCACTTGTAAATCTGTTAAATTGATGC
1447335 TTTCAATTCACTTGTAAATCTGTTAAATTGATGC
1 TTTCAATTCACTTGTAAATCTGTTAAATTGATGC
1447369 T
1 T
1447370 AAGTATCTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (34 bp):
TTTCAATTCACTTGTAAATCTGTTAAATTGATGC
Found at i:1449115 original size:22 final size:22
Alignment explanation
Indices: 1449090--1449132 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
1449080 TGGTGGTCTG
1449090 CCTTCAATATCGCGATACCATA
1 CCTTCAATATCGCGATACCATA
* *
1449112 CCTTCGATATTGCGATACCAT
1 CCTTCAATATCGCGATACCAT
1449133 CCCTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (22 bp):
CCTTCAATATCGCGATACCATA
Done.