Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold85
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1711616
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 47147 characters in sequence are not A, C, G, or T
File 5 of 5
Found at i:1450834 original size:18 final size:18
Alignment explanation
Indices: 1450811--1450846 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1450801 ATTCGTACCT
1450811 TAGAGGAAGGCGATGTTA
1 TAGAGGAAGGCGATGTTA
1450829 TAGAGGAAGGCGATGTTA
1 TAGAGGAAGGCGATGTTA
1450847 AAGATGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.39, T:0.22
Consensus pattern (18 bp):
TAGAGGAAGGCGATGTTA
Found at i:1454434 original size:10 final size:10
Alignment explanation
Indices: 1454421--1454447 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1454411 TAAAAAATAA
1454421 ATATATGTAT
1 ATATATGTAT
1454431 ATATATGTAT
1 ATATATGTAT
1454441 ATATATG
1 ATATATG
1454448 AGAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (10 bp):
ATATATGTAT
Found at i:1454499 original size:29 final size:29
Alignment explanation
Indices: 1454467--1454531 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
1454457 ATTCGTTTTT
*
1454467 TAAAAAAT-ATTAATAA-AATAACAAGATAA
1 TAAAAAATCA-TAAAAATAATAACAAGA-AA
*
1454496 T-AAAAATCATAAAAATAATAACAATAAA
1 TAAAAAATCATAAAAATAATAACAAGAAA
1454524 TAAAAAAT
1 TAAAAAAT
1454532 TAAAGCTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.23
Consensus pattern (29 bp):
TAAAAAATCATAAAAATAATAACAAGAAA
Found at i:1454509 original size:9 final size:9
Alignment explanation
Indices: 1454469--1454529 Score: 52
Period size: 9 Copynumber: 6.6 Consensus size: 9
1454459 TCGTTTTTTA
*
1454469 AAAAATATT
1 AAAAATAAT
*
1454478 AATAA-AAT
1 AAAAATAAT
1454486 AACAAGATAAT
1 AA-AA-ATAAT
*
1454497 AAAAATCAT
1 AAAAATAAT
1454506 AAAAATAAT
1 AAAAATAAT
*
1454515 AACAATAAAT
1 AAAAAT-AAT
1454525 AAAAA
1 AAAAA
1454530 ATTAAAGCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
8 4 0.10
9 22 0.54
10 10 0.24
11 5 0.12
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (9 bp):
AAAAATAAT
Found at i:1455092 original size:321 final size:319
Alignment explanation
Indices: 1454509--1455139 Score: 1120
Period size: 321 Copynumber: 2.0 Consensus size: 319
1454499 AAATCATAAA
1454509 AATAATAACAATAAATAAAAAATTAAAGCTTAAAGGCCTAGAACCGAATTAAAATAAAAATAAAA
1 AATAATAACAATAAATAAAAAATTAAAGCTTAAAGGCCTAGAACCGAATTAAAATAAAAATAAAA
1454574 TTAGAGCGTATAAATTAAAAAAAAACTGAAACTAGGACCAAATTTATACACACGCACAAAGTCAG
66 TTAGAGCGTATAAATTAAAAAAAAACTGAAACTAGGACCAAATTTATACACACGCACAAAGTCAG
* *
1454639 GGACTAAGTGGAAAATAATCCCAAACACCCTAAACGTACAGCTTCATGCGGGACTAAAATGAAAC
131 GGACTAAGAGGAAAATAACCCCAAACACCCTAAACGTACAGCTTCATGCGGGACTAAAATGAAAC
* *
1454704 AGGGATAAAATTACGGGGTCAATTTAAAAGAAACGGAAAAGGAAGAAAAAGGACCGCATTGCAAA
196 AGGGATAAAAATACGGGGTCAACTTAAAAGAAACGGAAAAGGAAGAAAAAGGACCGCATTGCAAA
* *
1454769 CCATCGTAAAGGCGAAGGGACCACGCGCGTAAATGGTCCATTTAAAAAAAACTAAAAAT
261 CCATCGCAAAGGCGAAGGGACCACGCGCGTAAATAGTCCATTTAAAAAAAACTAAAAAT
* * * *
1454828 AATAATAATAATAAATAAAAAAATTTAAAGCTTAAAGGGCCTAGGATCGAATTAAAATTAAAATA
1 AATAATAACAATAAAT-AAAAAA-TTAAAGCTTAAA-GGCCTAGAACCGAATTAAAATAAAAATA
1454893 AAATTAGAGCGTAT-AATTAAAAAAAAACTGAAACTAGGACCAAATTTATACACACGCACAAAGT
63 AAATTAGAGCGTATAAATTAAAAAAAAACTGAAACTAGGACCAAATTTATACACACGCACAAAGT
1454957 CAGGGACTAAGAGGAAAATAACCCCAAACACCCTAAACGTACAGCTTCATGCGGGACTAAAATGA
128 CAGGGACTAAGAGGAAAATAACCCCAAACACCCTAAACGTACAGCTTCATGCGGGACTAAAATGA
*
1455022 AACAGGGATAAAAATACGGGGTCAACTTAAAAGAAACGGAAAAGGAAGAAAAAGGACCGTATTGC
193 AACAGGGATAAAAATACGGGGTCAACTTAAAAGAAACGGAAAAGGAAGAAAAAGGACCGCATTGC
*
1455087 AAACCATCGCAAAGGCGGAGGGACCACGCGCGTAAATAGTCCATTTAAAAAAA
258 AAACCATCGCAAAGGCGAAGGGACCACGCGCGTAAATAGTCCATTTAAAAAAA
1455140 CACTCGGATC
Statistics
Matches: 297, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
319 15 0.05
320 6 0.02
321 237 0.80
322 39 0.13
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (319 bp):
AATAATAACAATAAATAAAAAATTAAAGCTTAAAGGCCTAGAACCGAATTAAAATAAAAATAAAA
TTAGAGCGTATAAATTAAAAAAAAACTGAAACTAGGACCAAATTTATACACACGCACAAAGTCAG
GGACTAAGAGGAAAATAACCCCAAACACCCTAAACGTACAGCTTCATGCGGGACTAAAATGAAAC
AGGGATAAAAATACGGGGTCAACTTAAAAGAAACGGAAAAGGAAGAAAAAGGACCGCATTGCAAA
CCATCGCAAAGGCGAAGGGACCACGCGCGTAAATAGTCCATTTAAAAAAAACTAAAAAT
Found at i:1456326 original size:44 final size:44
Alignment explanation
Indices: 1456262--1456503 Score: 306
Period size: 44 Copynumber: 5.5 Consensus size: 44
1456252 ACTAGTATGG
1456262 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
** * *
1456306 GAAGACAAGATCTG-TCATCTTCAATCTACTTCACGCCAATACGT
1 GAAGACAAGATCTGCT-ATCTTTGATCTACTTCATGCCAATACAT
*
1456350 GAAGACAAGATCTGCTACCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
* * * * ** ***
1456394 GAAGACAAGATTTGCTTTCTTCGATCTACTTTACCACCAATATGG
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCA-TGCCAATACAT
* *
1456439 GAAGACAAGATCTGTTATCTTTGATCTACTTCATGCTAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
*
1456483 GAAGACAAGATCTACTATCTT
1 GAAGACAAGATCTGCTATCTT
1456504 CAGCCTGCTC
Statistics
Matches: 163, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
43 1 0.01
44 127 0.78
45 35 0.21
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
Found at i:1456487 original size:89 final size:89
Alignment explanation
Indices: 1456233--1456495 Score: 395
Period size: 89 Copynumber: 3.0 Consensus size: 89
1456223 ACTAGATGTG
* *
1456233 ATCTTCGATCTACTTCACCACTAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
1 ATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
1456298 CAATACATGAAGACAAGATCTGTC
66 CAATACATGAAGACAAGATCTGTC
* * * * *
1456322 ATCTTCAATCTACTTCA-CGCCAATACGTGAAGACAAGATCTGCTACCTTTGATCTACTTCATGC
1 ATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
*
1456386 CAATACATGAAGACAAGATTTG-C
66 CAATACATGAAGACAAGATCTGTC
* * *
1456409 TTTCTTCGATCTACTTTACCACCAATATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCATG
1 -ATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATG
*
1456474 CTAATACATGAAGACAAGATCT
65 CCAATACATGAAGACAAGATCT
1456496 ACTATCTTCA
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
87 1 0.01
88 76 0.49
89 77 0.50
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (89 bp):
ATCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
CAATACATGAAGACAAGATCTGTC
Found at i:1456591 original size:88 final size:88
Alignment explanation
Indices: 1456478--1456819 Score: 497
Period size: 88 Copynumber: 3.9 Consensus size: 88
1456468 TTCATGCTAA
* * * * * *
1456478 TACATGAAGACAAGATCTACTATCTTCAGCCTGCTCCGCTACAACCCAGGGAAGCAAGGCTGGTG
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAAGCAAGGCTGGTA
* *
1456543 TCTTTGATCTGCTTCACTGTTGG
66 TCTTCGATCTGCTTCACTGTCGG
* * * *
1456566 TGCAGAAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGTTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAAGCAAGGCTGGTA
*
1456631 TCTTCGATCTACTTCACTGTCGG
66 TCTTCGATCTGCTTCACTGTCGG
*
1456654 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGG-AGATAAGGCTGGT
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAAG-CAAGGCTGGT
1456718 ATCTTCGATCTGCTTCACTGTCGG
65 ATCTTCGATCTGCTTCACTGTCGG
* ** *
1456742 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCATTATGACCCAGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAAGCAAGGCTGGTA
*
1456807 TCTTCGATTTGCT
66 TCTTCGATCTGCT
1456820 CTGCTACTGC
Statistics
Matches: 227, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
87 1 0.00
88 225 0.99
89 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (88 bp):
TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAAGCAAGGCTGGTA
TCTTCGATCTGCTTCACTGTCGG
Found at i:1456621 original size:44 final size:44
Alignment explanation
Indices: 1456573--1456799 Score: 179
Period size: 44 Copynumber: 5.2 Consensus size: 44
1456563 TGGTGCAGAA
*
1456573 AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACCCAGGG
* * * * * * * *** *
1456617 AGGCAAGGT-TGGTATCTTCGATCTACTTCACTGTCGGTACAGGA
1 AGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACGACCCAGGG
*
1456661 AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACCCAGGG
** * * * * * * *** *
1456705 AGATAAG-GCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGA
1 AGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACGACCCAGGG
* *
1456749 AGGCAAGATCTGCTATCTTCAACCTGCTCCATTATGACCCAGGG
1 AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACCCAGGG
1456793 AGGCAAG
1 AGGCAAG
1456800 GCTGGTATCT
Statistics
Matches: 128, Mismatches: 51, Indels: 8
0.68 0.27 0.04
Matches are distributed among these distances:
43 38 0.30
44 53 0.41
45 37 0.29
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (44 bp):
AGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACCCAGGG
Found at i:1456900 original size:176 final size:175
Alignment explanation
Indices: 1456543--1457070 Score: 568
Period size: 176 Copynumber: 3.0 Consensus size: 175
1456533 AAGGCTGGTG
* * * * *
1456543 TCTTTGATCTGCTTCACTGTTGGTGCAGAAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTAC
1 TCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA-TAT
* * * * * **
1456608 AACCCAGGGAGGCAAGGTTGGTATCTTCGATCTACT-T-C-ACTGTCGGTACAGGAAGGCAAGAT
65 GACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTCTGCTACTG-C--T-TAGGGAGATAAGAT
* * ** * * * ***
1456670 CTGCT-ATCTTCAACCTGCTCCACTACAACCCAGGGAGATAAGG-CT-GGTA
126 CTG-TAATTTTTAACCTATTCCACTACTATCCAGGGAGAT-AGGATTCACAA
1456719 TCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCATTAT
1 TCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA-TAT
*
1456784 GACCCAGGGAGGCAAGGCTGGTATCTTCGATTTGCTCTGCTACTGCTTAGGGAGATAAGATCTGT
65 GACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGT
* * *
1456849 AATTTTTAATCTATTCCACTGCTATCCAAGGAGATAGGATTCACAA
130 AATTTTTAACCTATTCCACTACTATCCAGGGAGATAGGATTCACAA
* * * * **
1456895 TCTTCGATCTGCTTCACTATCAGTACAGGAAGGCAAGATCTGCTATCTTTAACATGCTCC-GCTG
1 TCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCATATG
* * * * *
1456959 CCACCAAGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGT
66 AC-CCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGT
* *
1457024 AA-TTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAA
130 AATTTTTAACCTATTCCACTACTATCCAGGGAGATAGGATTCACAA
1457069 TC
1 TC
1457071 CTCAAATTAT
Statistics
Matches: 301, Mismatches: 44, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
174 47 0.16
175 98 0.33
176 149 0.50
177 1 0.00
178 2 0.01
179 4 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (175 bp):
TCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCATATG
ACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGTA
ATTTTTAACCTATTCCACTACTATCCAGGGAGATAGGATTCACAA
Found at i:1457007 original size:175 final size:174
Alignment explanation
Indices: 1456718--1457070 Score: 519
Period size: 175 Copynumber: 2.0 Consensus size: 174
1456708 TAAGGCTGGT
* * * *
1456718 ATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCATTA
1 ATCTTCGATCTGCTTCACTATCAGTACAGGAAGGCAAGATCTGCTATCTTCAACATGCTCCA-GA
* * * *
1456783 TGACCCAGGGAGGCAAGGCTGGTATCTTCGATTTGCTCTGCTACTGCTTAGGGAGATAAGATCTG
65 TGACCCAAGGAGGCAAGGCTAGTATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
* *
1456848 TAATTTTTAATCTATTCCACTGCTATCCAAGGAGATAGGATTCACA
130 TAA-TTTTAACCTATTCCACTACTATCCAAGGAGATAGGATTCACA
* *
1456894 ATCTTCGATCTGCTTCACTATCAGTACAGGAAGGCAAGATCTGCTATCTTTAACATGCTCC-GCT
1 ATCTTCGATCTGCTTCACTATCAGTACAGGAAGGCAAGATCTGCTATCTTCAACATGCTCCAGAT
* *
1456958 GCCACCAAGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
66 GAC-CCAAGGAGGCAAGGCTAGTATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
* * *
1457023 TAATTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCA
130 TAATTTTAACCTATTCCACTACTATCCAAGGAGATAGGATTCACA
1457068 ATC
1 ATC
1457071 CTCAAATTAT
Statistics
Matches: 159, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
174 43 0.27
175 59 0.37
176 57 0.36
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (174 bp):
ATCTTCGATCTGCTTCACTATCAGTACAGGAAGGCAAGATCTGCTATCTTCAACATGCTCCAGAT
GACCCAAGGAGGCAAGGCTAGTATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGT
AATTTTAACCTATTCCACTACTATCCAAGGAGATAGGATTCACA
Found at i:1457272 original size:174 final size:174
Alignment explanation
Indices: 1457078--1457455 Score: 605
Period size: 174 Copynumber: 2.2 Consensus size: 174
1457068 ATCCTCAAAT
*
1457078 TATTCCACTGCTGACCAGGGAGATAAGATTGGTTTTTTCGATCTACTTCACTGTTAGTACAAGGA
1 TATTCCACTGCTGACCAGGGAGATAAGATTGGTTTTTTCGATCTACTTCACTGTCAGTACAAGGA
1457143 GGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCGAT
66 GGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCGAT
* ** *
1457208 CTGCTATGCTACTGCTTAGGGAGATAAGATCTATAATTTTAACC
131 CTACTACACTACTGCTTAGGGAGATAAGATCTACAATTTTAACC
* * *
1457252 TATTCCACTGCTGTCCAGGGAGATAAGATTGGTTTTTTCGATCTGCTTCACTGTCAGTACAGGGA
1 TATTCCACTGCTGACCAGGGAGATAAGATTGGTTTTTTCGATCTACTTCACTGTCAGTACAAGGA
1457317 GGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCGAT
66 GGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCGAT
* *
1457382 CTACTCCACTACTGCTTAGGGAGATAATATCTACAATTTTTTTAACC
131 CTACTACACTACTGCTTAGGGAGATAAGATCTACAA---TTTTAACC
* *
1457429 TACTCCGCTGCT-ACTCAGGGAGATAAG
1 TATTCCACTGCTGAC-CAGGGAGATAAG
1457456 GCTGGGGACT
Statistics
Matches: 187, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
174 156 0.83
176 1 0.01
177 30 0.16
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (174 bp):
TATTCCACTGCTGACCAGGGAGATAAGATTGGTTTTTTCGATCTACTTCACTGTCAGTACAAGGA
GGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCACCGAGGGAGGCAAGGCTAGTGTCTTCGAT
CTACTACACTACTGCTTAGGGAGATAAGATCTACAATTTTAACC
Found at i:1457382 original size:88 final size:88
Alignment explanation
Indices: 1457114--1457383 Score: 266
Period size: 88 Copynumber: 3.1 Consensus size: 88
1457104 GATTGGTTTT
* * *
1457114 TTCGATCTACTTCACTGTTAGTACAAGGAGGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCA
1 TTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCA
1457179 CCGAGGGAGGCAAGGCTAGTGTC
66 CCGAGGGAGGCAAGGCTAGTGTC
* ** * * ** *
1457202 TTCGATCTGCTATGCTACTG-C--T-TAGGGAGATAAGATCT-ATAAT-TTTAACCTATTCCACT
1 TTCGATCTGCT-T-C-ACTGTCAGTACAGGGAGGCAAGATCTGCT-ATCTTTAGCCTGCTCCGCT
** ** ** * * *
1457261 GCTGTCC-AGGGAGATAAGATTGGTTTT
62 GC-CACCGAGGGAGGCAAGGCTAGTGTC
1457288 TTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCA
1 TTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCA
1457353 CCGAGGGAGGCAAGGCTAGTGTC
66 CCGAGGGAGGCAAGGCTAGTGTC
1457376 TTCGATCT
1 TTCGATCT
1457384 ACTCCACTAC
Statistics
Matches: 133, Mismatches: 37, Indels: 24
0.69 0.19 0.12
Matches are distributed among these distances:
83 4 0.03
84 2 0.02
85 1 0.01
86 40 0.30
87 33 0.25
88 47 0.35
89 1 0.01
90 1 0.01
91 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.30
Consensus pattern (88 bp):
TTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAGATCTGCTATCTTTAGCCTGCTCCGCTGCCA
CCGAGGGAGGCAAGGCTAGTGTC
Found at i:1457457 original size:89 final size:88
Alignment explanation
Indices: 1457201--1457593 Score: 343
Period size: 89 Copynumber: 4.5 Consensus size: 88
1457191 AGGCTAGTGT
*** ** * *
1457201 CTTCGATCTGCTATGCTACTGCTTAGGGAGATAAGATCTATAA--TTTTAACCTATTCCACTGCT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTTAACCTACTCCGCTGCT
* ** ***
1457264 -GTCCAGGGAGATAAGATTGGTTT
66 ACT-CAGGGAGATAAGGCTGGGGA
* * * * * ** * * * *
1457287 TTTCGATCTGCTTCACTGTCAG-TACAGGGAGGCAAGATCTGCTA-TCTTTAGCCTGCTCCGCTG
1 CTTCGATCTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGCAATTTTTTAACCTACTCCGCTG
* ** * * *
1457350 CCAC-CGAGGGAGGCAAGGCTAGTGT
64 CTACTC-AGGGAGATAAGGCTGGGGA
* * *
1457375 CTTCGATCTACTCCACTACTGCTTAGGGAGATAATATCTACAATTTTTTTAACCTACTCCGCTGC
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA-TTTTTTAACCTACTCCGCTGC
1457440 TACTCAGGGAGATAAGGCTGGGGA
65 TACTCAGGGAGATAAGGCTGGGGA
* * *
1457464 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA-TTTTCAACCTACTCCACTGCT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTTAACCTACTCCGCTGCT
* *
1457528 GCTCAGGGAGAT-AGACTGGGGA
66 ACTCAGGGAGATAAGGCTGGGGA
1457550 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT
1457594 CTTCAATCTA
Statistics
Matches: 243, Mismatches: 54, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
86 65 0.27
87 63 0.26
88 42 0.17
89 72 0.30
90 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (88 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTTAACCTACTCCGCTGCT
ACTCAGGGAGATAAGGCTGGGGA
Found at i:1457572 original size:86 final size:87
Alignment explanation
Indices: 1457201--1457605 Score: 354
Period size: 86 Copynumber: 4.6 Consensus size: 87
1457191 AGGCTAGTGT
*** ** *
1457201 CTTCGATCTGCTATGCTACTGCTTAGGGAGATAAGATCTATAATTTT-AACCTATTCCACTGCT-
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTA
* * ***
1457264 GTCCAGGGAGATAAGATTGGTTT
66 CT-CAGGGAGATAAGACTGGGGA
* * * * * ** * * * *
1457287 TTTCGATCTGCTTCACTGTCAG-TACAGGGAGGCAAGATCTGCTATCTTT-AGCCTGCTCCGCTG
1 CTTCGATCTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGCAAT-TTTCAACCTACTCCACTG
* ** * * * *
1457350 CCAC-CGAGGGAGGCAAGGCTAGTGT
63 CTACTC-AGGGAGATAAGACTGGGGA
* * * * *
1457375 CTTCGATCTACTCCACTACTGCTTAGGGAGATAATATCTACAATTTTTTTAACCTACTCCGCTGC
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA--TTTTCAACCTACTCCACTGC
*
1457440 TACTCAGGGAGATAAGGCTGGGGA
64 TACTCAGGGAGATAAGACTGGGGA
* *
1457464 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTG
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTA
1457529 CTCAGGGAGAT-AGACTGGGGA
66 CTCAGGGAGATAAGACTGGGGA
* *
1457550 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAATCTACT
1 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACT
1457606 TCGCTGTCAA
Statistics
Matches: 255, Mismatches: 54, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
86 76 0.30
87 64 0.25
88 45 0.18
89 69 0.27
90 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (87 bp):
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTA
CTCAGGGAGATAAGACTGGGGA
Found at i:1457578 original size:42 final size:43
Alignment explanation
Indices: 1457445--1457585 Score: 169
Period size: 42 Copynumber: 3.3 Consensus size: 43
1457435 GCTGCTACTC
*
1457445 AGGGAGATAAGGCTGGGGACTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGACTGGGGACTTCGATCTGCTCCACTACTGCTT
** * * * * * *
1457488 AGGGAGATAAGATCT-GTAATTTTCAACCTACTCCACTGCTGCTC
1 AGGGAGATAAGA-CTGGGGA-CTTCGATCTGCTCCACTACTGCTT
1457532 AGGGAGAT-AGACTGGGGACTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGACTGGGGACTTCGATCTGCTCCACTACTGCTT
1457574 AGGGAGATAAGA
1 AGGGAGATAAGA
1457586 TCTGCAATCT
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
42 28 0.36
43 21 0.27
44 28 0.36
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (43 bp):
AGGGAGATAAGACTGGGGACTTCGATCTGCTCCACTACTGCTT
Found at i:1458913 original size:16 final size:16
Alignment explanation
Indices: 1458892--1458933 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
1458882 GGCCTCTCCT
1458892 TTTTTCTTTTT-TTTGC
1 TTTTTCTTTTTCTTT-C
1458908 TTTTTCTTTTTCTTTC
1 TTTTTCTTTTTCTTTC
1458924 TTTTT-TTTTT
1 TTTTTCTTTTT
1458934 GAAAAATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.20
16 17 0.68
17 3 0.12
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (16 bp):
TTTTTCTTTTTCTTTC
Found at i:1463475 original size:9 final size:9
Alignment explanation
Indices: 1463435--1463492 Score: 64
Period size: 9 Copynumber: 6.3 Consensus size: 9
1463425 TCGTTTTTTA
1463435 AAAAATAAT
1 AAAAATAAT
*
1463444 AATAA-AAT
1 AAAAATAAT
1463452 AACAAGATAAT
1 AA-AA-ATAAT
*
1463463 AAAAATCAT
1 AAAAATAAT
1463472 AAAAATAAT
1 AAAAATAAT
*
1463481 AATAATAAT
1 AAAAATAAT
1463490 AAA
1 AAA
1463493 TAAAAAAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
8 5 0.12
9 27 0.68
10 3 0.08
11 5 0.12
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAAATAAT
Found at i:1468200 original size:165 final size:165
Alignment explanation
Indices: 1467928--1468255 Score: 620
Period size: 165 Copynumber: 2.0 Consensus size: 165
1467918 ATAGCGTCAG
1467928 GTAAATTTTACAAAAGGAAAAACTTGAAAGTTAACCAGAAAAAGTAATGGGGATCGTGTTACAAC
1 GTAAATTTTACAAAAGGAAAAACTTGAAAGTTAACCAGAAAAAGTAATGGGGATCGTGTTACAAC
*
1467993 TCGTACGAAAAAACGTACGTAAACGAACAACTCAAGGATCCTCCAAAATGTAAGGATAAGAAAAA
66 TCGCACGAAAAAACGTACGTAAACGAACAACTCAAGGATCCTCCAAAATGTAAGGATAAGAAAAA
1468058 GCGGATAGAAAAGTATAAAGTTGTAAGTAAGTTAA
131 GCGGATAGAAAAGTATAAAGTTGTAAGTAAGTTAA
*
1468093 GTAAATTTTACAAAAGGAAAAACTTGAATGTTAACCAGAAAAAGTAATGGGGATCGTGTTACAAC
1 GTAAATTTTACAAAAGGAAAAACTTGAAAGTTAACCAGAAAAAGTAATGGGGATCGTGTTACAAC
*
1468158 TCGCACGAAAGAACGTACGTAAACGAACAACTCAAGGATCCTCCAAAATGTAAGGATAAGAAAAA
66 TCGCACGAAAAAACGTACGTAAACGAACAACTCAAGGATCCTCCAAAATGTAAGGATAAGAAAAA
*
1468223 GCGGATAGAAAAGTCTAAAGTTGTAAGTAAGTT
131 GCGGATAGAAAAGTATAAAGTTGTAAGTAAGTT
1468256 TCTTATCGAG
Statistics
Matches: 159, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
165 159 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (165 bp):
GTAAATTTTACAAAAGGAAAAACTTGAAAGTTAACCAGAAAAAGTAATGGGGATCGTGTTACAAC
TCGCACGAAAAAACGTACGTAAACGAACAACTCAAGGATCCTCCAAAATGTAAGGATAAGAAAAA
GCGGATAGAAAAGTATAAAGTTGTAAGTAAGTTAA
Found at i:1472816 original size:20 final size:21
Alignment explanation
Indices: 1472791--1472835 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
1472781 ATTTTAAAAG
* *
1472791 TTTAGATAA-AAAATATTAAA
1 TTTAGATAATAAAAAAATAAA
1472811 TTTAGATAATAAAAAAATAAA
1 TTTAGATAATAAAAAAATAAA
1472832 TTTA
1 TTTA
1472836 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
TTTAGATAATAAAAAAATAAA
Found at i:1473976 original size:18 final size:18
Alignment explanation
Indices: 1473928--1473985 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
1473918 TCACTCAAAT
* *
1473928 TCAACACTCTCTATTCTC
1 TCAACTCTCTCAATTCTC
1473946 TCTAAACT-T-TCAATTCTC
1 TC--AACTCTCTCAATTCTC
*
1473964 TCAACTCTCTCAATTTTC
1 TCAACTCTCTCAATTCTC
1473982 TCAA
1 TCAA
1473986 ATTTTGTTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
16 4 0.12
17 1 0.03
18 24 0.73
19 1 0.03
20 3 0.09
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (18 bp):
TCAACTCTCTCAATTCTC
Found at i:1477730 original size:19 final size:19
Alignment explanation
Indices: 1477700--1477755 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
1477690 TTTAAATTTT
1477700 TATTAAATATAATTATATA
1 TATTAAATATAATTATATA
1477719 T-TTAATATATAATTATATA
1 TATTAA-ATATAATTATATA
* *
1477738 TATTAAAAATAATAATAT
1 TATTAAATATAATTATAT
1477756 TGAACTTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.12
19 25 0.76
20 4 0.12
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TATTAAATATAATTATATA
Found at i:1478056 original size:172 final size:172
Alignment explanation
Indices: 1477770--1478113 Score: 679
Period size: 172 Copynumber: 2.0 Consensus size: 172
1477760 CTTTCCTTCA
*
1477770 AACAAATAATTTTATTATATATATTAATAGACTTGTCTATGAATCAAGTGGTCCACTCGATTAGT
1 AACAAATAATTTTATTATATATATCAATAGACTTGTCTATGAATCAAGTGGTCCACTCGATTAGT
1477835 TGAGCCGAGCTTAGACTAAGACTTTCATGTCTCAAGTTAGGTCGATCCAGCCGAAATTTGATTTA
66 TGAGCCGAGCTTAGACTAAGACTTTCATGTCTCAAGTTAGGTCGATCCAGCCGAAATTTGATTTA
1477900 TATGATAAAATATTTTTAATTTGACTAAATTACTAAAAGATG
131 TATGATAAAATATTTTTAATTTGACTAAATTACTAAAAGATG
1477942 AACAAATAATTTTATTATATATATCAATAGACTTGTCTATGAATCAAGTGGTCCACTCGATTAGT
1 AACAAATAATTTTATTATATATATCAATAGACTTGTCTATGAATCAAGTGGTCCACTCGATTAGT
1478007 TGAGCCGAGCTTAGACTAAGACTTTCATGTCTCAAGTTAGGTCGATCCAGCCGAAATTTGATTTA
66 TGAGCCGAGCTTAGACTAAGACTTTCATGTCTCAAGTTAGGTCGATCCAGCCGAAATTTGATTTA
1478072 TATGATAAAATATTTTTAATTTGACTAAATTACTAAAAGATG
131 TATGATAAAATATTTTTAATTTGACTAAATTACTAAAAGATG
1478114 TCGTTTTTAA
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 171 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (172 bp):
AACAAATAATTTTATTATATATATCAATAGACTTGTCTATGAATCAAGTGGTCCACTCGATTAGT
TGAGCCGAGCTTAGACTAAGACTTTCATGTCTCAAGTTAGGTCGATCCAGCCGAAATTTGATTTA
TATGATAAAATATTTTTAATTTGACTAAATTACTAAAAGATG
Found at i:1480851 original size:16 final size:16
Alignment explanation
Indices: 1480830--1480866 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
1480820 TTTAGCATCT
1480830 GCATCAATTTATCCAA
1 GCATCAATTTATCCAA
1480846 GCATCAATTTATCCAA
1 GCATCAATTTATCCAA
1480862 GCATC
1 GCATC
1480867 TTTTATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (16 bp):
GCATCAATTTATCCAA
Found at i:1483620 original size:20 final size:19
Alignment explanation
Indices: 1483578--1483622 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
1483568 GTTGTAATGT
*
1483578 AATTTAATATTTACAATAT
1 AATTTAATATTTACAATAA
1483597 AATTTATATATTTA-AATTAA
1 AATTTA-ATATTTACAA-TAA
1483617 AATTTA
1 AATTTA
1483623 GAAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTAATATTTACAATAA
Found at i:1486258 original size:21 final size:21
Alignment explanation
Indices: 1486202--1486260 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
1486192 CACACTTGCG
1486202 TGTGTTTTGGACACACGGCCA
1 TGTGTTTTGGACACACGGCCA
*** * * * *
1486223 TGTCCCTTAGCCACACGGGCT
1 TGTGTTTTGGACACACGGCCA
1486244 TGTGTTTTGGACACACG
1 TGTGTTTTGGACACACG
1486261 AGCGTGTTTG
Statistics
Matches: 26, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (21 bp):
TGTGTTTTGGACACACGGCCA
Found at i:1488026 original size:18 final size:19
Alignment explanation
Indices: 1487999--1488034 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
1487989 TATTTGTATA
1487999 TTAAATAGATATTTATTAT
1 TTAAATAGATATTTATTAT
1488018 TTAAA-AGATATTTATTA
1 TTAAATAGATATTTATTA
1488035 GATAAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (19 bp):
TTAAATAGATATTTATTAT
Found at i:1488040 original size:18 final size:19
Alignment explanation
Indices: 1488000--1488042 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
1487990 ATTTGTATAT
**
1488000 TAAATAGATATTTATTATT
1 TAAATAGATATTTATTAGA
1488019 TAAA-AGATATTTATTAGA
1 TAAATAGATATTTATTAGA
1488037 TAAATA
1 TAAATA
1488043 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (19 bp):
TAAATAGATATTTATTAGA
Found at i:1488967 original size:23 final size:21
Alignment explanation
Indices: 1488940--1489000 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
1488930 GCTTTGCCAA
1488940 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCGT-TT
**
1488963 TCAGGCACCTCGTGTGTCGTTT
1 TCAGGCA-CTTATGTGTCGTTT
1488985 T-AGGCACTTATGTGTC
1 TCAGGCACTTATGTGTC
1489001 ATATACTGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 8 0.24
21 5 0.15
22 3 0.09
23 16 0.48
24 1 0.03
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (21 bp):
TCAGGCACTTATGTGTCGTTT
Found at i:1490881 original size:2 final size:2
Alignment explanation
Indices: 1490864--1490897 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
1490854 AATATTGAAA
* *
1490864 AT AT AT AA AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1490898 GAGTGAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:1492120 original size:14 final size:14
Alignment explanation
Indices: 1492097--1492127 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1492087 TACTTCTTAC
*
1492097 AAATTCAAAAATTA
1 AAATTAAAAAATTA
1492111 AAATTAAAAAATTA
1 AAATTAAAAAATTA
1492125 AAA
1 AAA
1492128 ATTCATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATTAAAAAATTA
Found at i:1492247 original size:16 final size:14
Alignment explanation
Indices: 1492228--1492270 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
1492218 TGTGAAATTT
1492228 ATTTATTAAAATAATA
1 ATTTA-TAAAA-AATA
1492244 ATTTATAAAAAATA
1 ATTTATAAAAAATA
*
1492258 TTTTTATAAAAAA
1 -ATTTATAAAAAA
1492271 ACTCACAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 4 0.16
15 16 0.64
16 5 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATTTATAAAAAATA
Found at i:1498518 original size:17 final size:17
Alignment explanation
Indices: 1498496--1498531 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
1498486 AATCCAACTG
*
1498496 AACCAAATTTGGTTTTC
1 AACCAAACTTGGTTTTC
1498513 AACCAAACTTGGTTTTC
1 AACCAAACTTGGTTTTC
1498530 AA
1 AA
1498532 TCATGCTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (17 bp):
AACCAAACTTGGTTTTC
Found at i:1499210 original size:30 final size:29
Alignment explanation
Indices: 1499176--1499232 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
1499166 GTGATTTTTG
* *
1499176 AAAATTAAATCAAATTAAAATTTCATGTAT
1 AAAATTAAATAAAATCAAAATTT-ATGTAT
*
1499206 AAAATTACATAAAATCAAAATTTATGT
1 AAAATTAAATAAAATCAAAATTTATGT
1499233 GTGATATTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (29 bp):
AAAATTAAATAAAATCAAAATTTATGTAT
Found at i:1504799 original size:17 final size:18
Alignment explanation
Indices: 1504774--1504812 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
1504764 TAACATTGAA
*
1504774 TTTTGAAAT-TTTTATAT
1 TTTTAAAATATTTTATAT
*
1504791 TTTTAAAATATTTTTTAT
1 TTTTAAAATATTTTATAT
1504809 TTTT
1 TTTT
1504813 GAATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTAAAATATTTTATAT
Found at i:1505371 original size:26 final size:27
Alignment explanation
Indices: 1505342--1505394 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
1505332 TATTTTTTTC
1505342 ATAAATTTTAAATTTATTT-TTTAAAA
1 ATAAATTTTAAATTTATTTATTTAAAA
* *
1505368 ATAAATTTTAATTTTTTTTATTTAAAA
1 ATAAATTTTAAATTTATTTATTTAAAA
1505395 TATGAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATAAATTTTAAATTTATTTATTTAAAA
Found at i:1505617 original size:20 final size:20
Alignment explanation
Indices: 1505574--1505616 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
1505564 TTAAAGTCTC
1505574 AAAATTAAAATTAAAATATA
1 AAAATTAAAATTAAAATATA
*
1505594 AAAATTAAATTTAAAA-ATA
1 AAAATTAAAATTAAAATATA
1505613 AAAA
1 AAAA
1505617 AATACGTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAATTAAAATTAAAATATA
Found at i:1528094 original size:25 final size:23
Alignment explanation
Indices: 1528049--1528094 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
1528039 CTTTTCTTTA
**
1528049 GTTTTTTTTATTTCTTTTTAGGT
1 GTTTTTTTTATTTCTAGTTAGGT
1528072 GTTTATTTTTATTTCCTAGTTAG
1 GTTT-TTTTTATTT-CTAGTTAG
1528095 AATTCTTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 9 0.47
25 6 0.32
ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67
Consensus pattern (23 bp):
GTTTTTTTTATTTCTAGTTAGGT
Found at i:1541879 original size:46 final size:47
Alignment explanation
Indices: 1541812--1541914 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 47
1541802 TTAATGTTGG
*
1541812 TGCAATAACTAGATATAAATAATA-AAATTGTGAGGATAGTTATCGA
1 TGCAATAACTAGATATAAATAAGACAAATTGTGAGGATAGTTATCGA
* *
1541858 TGCAATAACTAGATATAAATAAGACAAATTGTGAGGATGGTTGTCGA
1 TGCAATAACTAGATATAAATAAGACAAATTGTGAGGATAGTTATCGA
1541905 TGCAATAACT
1 TGCAATAACT
1541915 TGAAAACAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 23 0.43
47 30 0.57
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (47 bp):
TGCAATAACTAGATATAAATAAGACAAATTGTGAGGATAGTTATCGA
Found at i:1543428 original size:56 final size:50
Alignment explanation
Indices: 1543350--1543540 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 50
1543340 GGGAATGAGA
* *
1543350 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATAAGAGG
* * *
1543406 TCCCATATAAGACCATGTCTGGGACAGGGCGTTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
** * * * * * **
1543456 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGACAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
* *
1543506 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
1543541 NNNNNNNNNN
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 75 0.66
52 1 0.01
53 2 0.02
55 1 0.01
56 34 0.30
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGG
Found at i:1545644 original size:59 final size:59
Alignment explanation
Indices: 1545579--1545697 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
1545569 GCAAAAAGAT
1545579 AGCAAAATTAACGATAAAATAGGCATGGATTCACTGAGTTATAAAATTCAATTTACTAA
1 AGCAAAATTAACGATAAAATAGGCATGGATTCACTGAGTTATAAAATTCAATTTACTAA
*
1545638 AGCAAAATTAAGGATAAAATAGGCATGGATTCACTGAGTTATAAAATTCAATTTACTAA
1 AGCAAAATTAACGATAAAATAGGCATGGATTCACTGAGTTATAAAATTCAATTTACTAA
1545697 A
1 A
1545698 TTGAAAATGC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (59 bp):
AGCAAAATTAACGATAAAATAGGCATGGATTCACTGAGTTATAAAATTCAATTTACTAA
Found at i:1556331 original size:25 final size:25
Alignment explanation
Indices: 1556298--1556373 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
1556288 TTTTTCATCT
1556298 CAATTTTACCCCAATAAAATTTTGA
1 CAATTTTACCCCAATAAAATTTTGA
* *
1556323 CAATTTTACCCTCAGTAAAATTTTAA
1 CAATTTTACCC-CAATAAAATTTTGA
* * **
1556349 CGATTTTATCCTGATAAAATTTTGA
1 CAATTTTACCCCAATAAAATTTTGA
1556374 GAAAATTCAT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 21 0.50
26 21 0.50
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (25 bp):
CAATTTTACCCCAATAAAATTTTGA
Found at i:1556354 original size:26 final size:25
Alignment explanation
Indices: 1556298--1556371 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 25
1556288 TTTTTCATCT
*
1556298 CAATTTTACCC-CAATAAAATTTTGA
1 CAATTTTACCCTC-ATAAAATTTTAA
1556323 CAATTTTACCCTCAGTAAAATTTTAA
1 CAATTTTACCCTCA-TAAAATTTTAA
* * *
1556349 CGATTTTATCCTGATAAAATTTT
1 CAATTTTACCCTCATAAAATTTT
1556372 GAGAAAATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 21 0.49
26 22 0.51
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (25 bp):
CAATTTTACCCTCATAAAATTTTAA
Found at i:1562561 original size:13 final size:13
Alignment explanation
Indices: 1562543--1562567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1562533 GTTTTTTTTT
1562543 GGGGGGGGGGGAG
1 GGGGGGGGGGGAG
1562556 GGGGGGGGGGGA
1 GGGGGGGGGGGA
1562568 AAAGTTTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.92, T:0.00
Consensus pattern (13 bp):
GGGGGGGGGGGAG
Found at i:1568003 original size:18 final size:20
Alignment explanation
Indices: 1567967--1568010 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
1567957 CATCAAATGG
*
1567967 ATTAAATCGTAAAATTATGA
1 ATTAAATCGTAAAAATATGA
1567987 ATTAAAT-G-AAAAATATGA
1 ATTAAATCGTAAAAATATGA
1568005 A-TAAAT
1 ATTAAAT
1568011 ATATGATACC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
19 1 0.04
20 7 0.30
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (20 bp):
ATTAAATCGTAAAAATATGA
Found at i:1568960 original size:9 final size:9
Alignment explanation
Indices: 1568946--1568981 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
1568936 ATAGTTTGAC
1568946 ATTCGAATT
1 ATTCGAATT
1568955 ATTCGAATT
1 ATTCGAATT
*
1568964 ATTCGAGTT
1 ATTCGAATT
1568973 ATTCGAATT
1 ATTCGAATT
1568982 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (9 bp):
ATTCGAATT
Found at i:1578321 original size:21 final size:23
Alignment explanation
Indices: 1578297--1578349 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
1578287 GGCAAAGCGC
*
1578297 AAACTAACATATAAAAC-TG-TA
1 AAACTAACATAAAAAACTTGTTA
* *
1578318 AAACAAAAATAAAAAACTTGTTA
1 AAACTAACATAAAAAACTTGTTA
1578341 AAACTAACA
1 AAACTAACA
1578350 ACAATTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 14 0.56
22 2 0.08
23 9 0.36
ACGTcount: A:0.62, C:0.13, G:0.04, T:0.21
Consensus pattern (23 bp):
AAACTAACATAAAAAACTTGTTA
Found at i:1582239 original size:12 final size:12
Alignment explanation
Indices: 1582222--1582248 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
1582212 TTCTATCCAA
1582222 ATTCTATTTTTT
1 ATTCTATTTTTT
1582234 ATTCTATTTTTT
1 ATTCTATTTTTT
1582246 ATT
1 ATT
1582249 AATATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (12 bp):
ATTCTATTTTTT
Found at i:1582254 original size:13 final size:13
Alignment explanation
Indices: 1582226--1582283 Score: 57
Period size: 12 Copynumber: 4.6 Consensus size: 13
1582216 ATCCAAATTC
*
1582226 TATTTTTTATT-C
1 TATTTTTTATTAA
1582238 TATTTTTTATTAA
1 TATTTTTTATTAA
* **
1582251 TATTTTTAAGAAA
1 TATTTTTTATTAA
1582264 T-TTTTTTATTAA
1 TATTTTTTATTAA
*
1582276 AATTTTTT
1 TATTTTTT
1582284 CCGTGTTCTA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
12 19 0.53
13 17 0.47
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (13 bp):
TATTTTTTATTAA
Found at i:1584438 original size:62 final size:62
Alignment explanation
Indices: 1584362--1584488 Score: 245
Period size: 62 Copynumber: 2.0 Consensus size: 62
1584352 GTGGATACGG
*
1584362 TATTTTAGGAGGTATTGATGGATAATACCTCATCTGCCTTGTGGAAAATGTTAGAAACTCTT
1 TATTTTAGGAGGTATTGATGGAGAATACCTCATCTGCCTTGTGGAAAATGTTAGAAACTCTT
1584424 TATTTTAGGAGGTATTGATGGAGAATACCTCATCTGCCTTGTGGAAAATGTTAGAAACTCTT
1 TATTTTAGGAGGTATTGATGGAGAATACCTCATCTGCCTTGTGGAAAATGTTAGAAACTCTT
1584486 TAT
1 TAT
1584489 GCGACTAAGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (62 bp):
TATTTTAGGAGGTATTGATGGAGAATACCTCATCTGCCTTGTGGAAAATGTTAGAAACTCTT
Found at i:1592774 original size:54 final size:54
Alignment explanation
Indices: 1592680--1592782 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
1592670 AGTGATGATC
* ** *
1592680 TTAATATTAAATTTAATTTAATATTTATCTACATTTATATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATCTACATAAATATTATATTAATAAGAT
*
1592734 TTAATATTAAATTTAATCTAATATTTATCGT-GATAAATATTATATTAAT
1 TTAATATTAAATTTAATCTAATATTTATC-TACATAAATATTATATTAAT
1592783 TTAATATTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 42 0.98
55 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (54 bp):
TTAATATTAAATTTAATCTAATATTTATCTACATAAATATTATATTAATAAGAT
Found at i:1594548 original size:31 final size:31
Alignment explanation
Indices: 1594513--1594571 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
1594503 AACCCATAAA
1594513 TAATAAACAC-TAAAA-CCCTAATTAAAAATCC
1 TAATAAAC-CTTAAAAGCCCTAA-TAAAAATCC
1594544 TAATAAACCTTAAAAGCCCTAATAAAAA
1 TAATAAACCTTAAAAGCCCTAATAAAAA
1594572 CACGGGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 1 0.04
31 19 0.73
32 6 0.23
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (31 bp):
TAATAAACCTTAAAAGCCCTAATAAAAATCC
Found at i:1594874 original size:18 final size:19
Alignment explanation
Indices: 1594837--1594875 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
1594827 TTATAGATAT
1594837 AAGTAAAATTATATTTAAA
1 AAGTAAAATTATATTTAAA
1594856 AAGTGAAAATT-TA-TTAAA
1 AAGT-AAAATTATATTTAAA
1594874 AA
1 AA
1594876 ATATTAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 6 0.32
20 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (19 bp):
AAGTAAAATTATATTTAAA
Found at i:1594876 original size:19 final size:19
Alignment explanation
Indices: 1594837--1594876 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
1594827 TTATAGATAT
*
1594837 AAGTAAAATTATATTTAAA
1 AAGTAAAATTATATTAAAA
1594856 AAGTGAAAATT-TATTAAAA
1 AAGT-AAAATTATATTAAAA
1594875 AA
1 AA
1594877 TATTAGAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (19 bp):
AAGTAAAATTATATTAAAA
Found at i:1596541 original size:16 final size:16
Alignment explanation
Indices: 1596520--1596552 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1596510 AGTCAAATAC
1596520 ATTTAAA-AATATTTTA
1 ATTTAAATAA-ATTTTA
1596536 ATTTAAATAAATTTTA
1 ATTTAAATAAATTTTA
1596552 A
1 A
1596553 AATAAATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTAAATAAATTTTA
Found at i:1598275 original size:14 final size:16
Alignment explanation
Indices: 1598256--1598288 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
1598246 GATTATATCA
1598256 TTTTGGT-TTA-GTGG
1 TTTTGGTGTTATGTGG
1598270 TTTTGGTGTTATGTGG
1 TTTTGGTGTTATGTGG
1598286 TTT
1 TTT
1598289 AATGCATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 3 0.18
16 7 0.41
ACGTcount: A:0.06, C:0.00, G:0.33, T:0.61
Consensus pattern (16 bp):
TTTTGGTGTTATGTGG
Found at i:1602353 original size:92 final size:91
Alignment explanation
Indices: 1602196--1602404 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 91
1602186 TTGATTTTAG
* * *
1602196 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
1602261 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
1602288 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
1602352 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
1602380 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
1602405 GTTATAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 71 0.68
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:1602367 original size:24 final size:25
Alignment explanation
Indices: 1602332--1602379 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
1602322 TTATGAAATT
1602332 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
1602356 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
1602380 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:1602575 original size:16 final size:16
Alignment explanation
Indices: 1602554--1602595 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
1602544 TTATTAAATT
*
1602554 ATATATTTTAATTATA
1 ATATATTTTAATAATA
1602570 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
1602585 AT-TATGTTTAA
1 ATATAT-TTTAA
1602596 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:1602580 original size:15 final size:15
Alignment explanation
Indices: 1602545--1602586 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1602535 TTAAGAATTT
*
1602545 TATTAAATTAT-ATA
1 TATTTAATTATAATA
1602559 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
1602573 TATTTAATAATAAT
1 TATTTAATTATAAT
1602587 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:1602820 original size:45 final size:44
Alignment explanation
Indices: 1602740--1602829 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
1602730 ACCTCTATTC
1602740 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
1602784 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
1602829 C
1 C
1602830 GCCTCTATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.38
45 25 0.60
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:1602830 original size:16 final size:16
Alignment explanation
Indices: 1602809--1602841 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1602799 TTGATTTGCT
1602809 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
1602825 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
1602841 A
1 A
1602842 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:1603330 original size:15 final size:14
Alignment explanation
Indices: 1603300--1603327 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1603290 AAAAATATTT
1603300 TAAAAATAAAAAAA
1 TAAAAATAAAAAAA
1603314 TAAAAATAAAAAAA
1 TAAAAATAAAAAAA
1603328 ATATTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
TAAAAATAAAAAAA
Found at i:1607307 original size:6 final size:6
Alignment explanation
Indices: 1607271--1607330 Score: 65
Period size: 6 Copynumber: 10.3 Consensus size: 6
1607261 TTTAGCAAAT
*
1607271 TTAATA TT-AGA TTAA-A TTAAATA TT--TA TTAATA TTAATA TTAATA
1 TTAATA TTAATA TTAATA TT-AATA TTAATA TTAATA TTAATA TTAATA
1607316 TTAATA TTAAATA TT
1 TTAATA TT-AATA TT
1607331 TAATTTTTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
4 4 0.09
5 7 0.15
6 27 0.57
7 9 0.19
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:1611623 original size:37 final size:36
Alignment explanation
Indices: 1611576--1611645 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
1611566 TATCTTAATA
*
1611576 TTAAATTAATA-AAATACTATTAAGATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAT
* *
1611613 TTAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAATTAATATAAAACTATTAAAATAATATTA
1611646 TTTTTGGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAT
Found at i:1611785 original size:23 final size:23
Alignment explanation
Indices: 1611741--1611785 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1611731 CAACTGCCGC
**
1611741 CAGCCACTGGGATGCCGCTGTCG
1 CAGCCACTGACATGCCGCTGTCG
1611764 CAGCCACTGACATCGCCG-TGTC
1 CAGCCACTGACAT-GCCGCTGTC
1611786 TGATGGTGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.16, C:0.38, G:0.29, T:0.18
Consensus pattern (23 bp):
CAGCCACTGACATGCCGCTGTCG
Found at i:1626086 original size:27 final size:28
Alignment explanation
Indices: 1626056--1626116 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
1626046 TTAAAAATTC
* *
1626056 TAAAA-CCTTAAACTCAAATTTAATTTT
1 TAAAATCCATAAACCCAAATTTAATTTT
* *
1626083 TAAAATCCATAAACCCTAATTTATTTTT
1 TAAAATCCATAAACCCAAATTTAATTTT
1626111 TCAAAA
1 T-AAAA
1626117 ATCATAACCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 5 0.18
28 19 0.68
29 4 0.14
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.39
Consensus pattern (28 bp):
TAAAATCCATAAACCCAAATTTAATTTT
Found at i:1628586 original size:10 final size:10
Alignment explanation
Indices: 1628571--1628596 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
1628561 CTTACTGATC
1628571 TGTTAGTATT
1 TGTTAGTATT
1628581 TGTTAGTATT
1 TGTTAGTATT
1628591 TGTTAG
1 TGTTAG
1628597 GCACTTAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (10 bp):
TGTTAGTATT
Found at i:1629114 original size:25 final size:25
Alignment explanation
Indices: 1629077--1629130 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
1629067 AGTAGTGCAC
**
1629077 TTAATCATTATTTATTTTTTATAAAAA
1 TTAATCA-TATTTATAATTTA-AAAAA
1629104 TTAATCA-ATTTATAATTTAAAAAA
1 TTAATCATATTTATAATTTAAAAAA
1629128 TTA
1 TTA
1629131 TAAAAAATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.32
25 10 0.40
27 7 0.28
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (25 bp):
TTAATCATATTTATAATTTAAAAAA
Found at i:1634069 original size:18 final size:18
Alignment explanation
Indices: 1634048--1634083 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
1634038 CAAGCCTAGT
1634048 ACCAAAC-TAAAGCCCAAA
1 ACCAAACTTAAA-CCCAAA
1634066 ACCAAACTTAAACCCAAA
1 ACCAAACTTAAACCCAAA
1634084 CCTACCCCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.56, C:0.33, G:0.03, T:0.08
Consensus pattern (18 bp):
ACCAAACTTAAACCCAAA
Found at i:1638380 original size:35 final size:35
Alignment explanation
Indices: 1638332--1638505 Score: 339
Period size: 35 Copynumber: 4.9 Consensus size: 35
1638322 ATTTGTTAGA
1638332 TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
1 TATT-ATTATGTTTTAAGCTTGTTGGATATTGAATT
1638368 TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
1 TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
1638403 TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
1 TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
1638438 TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
1 TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
1638473 TATTATTATGTTTTAAGCTTGTTGGATATTGAA
1 TATTATTATGTTTTAAGCTTGTTGGATATTGAA
1638506 ATGATTGACA
Statistics
Matches: 138, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
35 134 0.97
36 4 0.03
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.53
Consensus pattern (35 bp):
TATTATTATGTTTTAAGCTTGTTGGATATTGAATT
Found at i:1639594 original size:32 final size:32
Alignment explanation
Indices: 1639557--1639636 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 32
1639547 AACAACTTTT
*
1639557 CCAGAAAATATTTTCA-GGAAATC-TGCCAAACA
1 CCAGAAAATATTTTCACAG-AATCAT-CCAAACA
* *
1639589 GCAGAAAATATTTTACACAGATTCATCCAAACA
1 CCAGAAAATATTTT-CACAGAATCATCCAAACA
1639622 CCAGAAAATATTTTC
1 CCAGAAAATATTTTC
1639637 TGTAAATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 14 0.34
33 25 0.61
34 2 0.05
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (32 bp):
CCAGAAAATATTTTCACAGAATCATCCAAACA
Found at i:1639693 original size:33 final size:34
Alignment explanation
Indices: 1639626--1639691 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
1639616 CAAACACCAG
*
1639626 AAAATATTTTCTGTAAATTATTTTACAGAAAAAT
1 AAAATATTTTCTGAAAATTATTTTACAGAAAAAT
*
1639660 AAAATATTTTCT-AAAATTTATTTTACGGAAAA
1 AAAATATTTTCTGAAAA-TTATTTTACAGAAAA
1639692 TATTTTACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 3 0.10
34 26 0.90
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (34 bp):
AAAATATTTTCTGAAAATTATTTTACAGAAAAAT
Found at i:1641713 original size:53 final size:53
Alignment explanation
Indices: 1641655--1641828 Score: 348
Period size: 53 Copynumber: 3.3 Consensus size: 53
1641645 GAGTTTTCGA
1641655 ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
1 ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
1641708 ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
1 ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
1641761 ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
1 ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
1641814 ATTCGAATAACTCGA
1 ATTCGAATAACTCGA
1641829 ATAATTCGAA
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 121 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (53 bp):
ATTCGAATAACTCGATTCGTTTAACTCGAAATTCGAAAAAAAAATTCGAGTTG
Found at i:1646784 original size:17 final size:17
Alignment explanation
Indices: 1646762--1646801 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
1646752 AATCAACCTT
1646762 CACCTCCGGCACCAATC
1 CACCTCCGGCACCAATC
*
1646779 CACCT-C--CACCGATC
1 CACCTCCGGCACCAATC
1646793 CACCTCCGG
1 CACCTCCGG
1646802 TCCTCCACGG
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 12 0.63
15 1 0.05
16 1 0.05
17 5 0.26
ACGTcount: A:0.20, C:0.55, G:0.12, T:0.12
Consensus pattern (17 bp):
CACCTCCGGCACCAATC
Found at i:1650313 original size:46 final size:44
Alignment explanation
Indices: 1650223--1650316 Score: 143
Period size: 46 Copynumber: 2.1 Consensus size: 44
1650213 ATTACAACAT
* *
1650223 CATTCTATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACAAAAGAATACTATTACGCCTCTATTC
*
1650267 CATTCCATTCAACCAAACAAAATGATTACCTATTACGCCTCTATTC
1 CATTCCATTCAACCAAACAAAA-GAATA-CTATTACGCCTCTATTC
1650313 CATT
1 CATT
1650317 ATGCCTCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 20 0.44
45 4 0.09
46 21 0.47
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (44 bp):
CATTCCATTCAACCAAACAAAAGAATACTATTACGCCTCTATTC
Found at i:1650322 original size:16 final size:16
Alignment explanation
Indices: 1650298--1650350 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
1650288 ATGATTACCT
1650298 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
1650314 ATTATGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
1650330 ATTACGCCCCTATTCC
1 ATTACGCCTCTATTCC
1650346 ATTAC
1 ATTAC
1650351 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:1653568 original size:73 final size:72
Alignment explanation
Indices: 1653290--1653569 Score: 235
Period size: 73 Copynumber: 3.8 Consensus size: 72
1653280 GATGTCGTTT
* * * * * ** *
1653290 TAAAGGTTTAGCCCTAACGAGTAACCTGACATG--TATATGTACAACTTTGGCCAAGCTATTTGA
1 TAAAGGTTTAGCCCGAACGGGTAACCTGACACGATTATATGT-CAGC-TCGAACAAGC-AATTGA
* * *
1653353 TGTGTCTACA
63 TGTATTTATA
* * * * * * * *
1653363 TTAAGGTTTAGCTCGGACAGGTAACCTGACACAATTATATGCTCAGTTCGAACGAGCAACTGATG
1 TAAAGGTTTAGCCCGAACGGGTAACCTGACACGATTATATG-TCAGCTCGAACAAGCAATTGATG
*
1653428 TATTCATA
65 TATTTATA
* **
1653436 TAAAGGTTTAGCCC-AGACGGGTAACCTGATACGATTATATGGTCAGCTC-AGATGAGCAATTGA
1 TAAAGGTTTAGCCCGA-ACGGGTAACCTGACACGATTATAT-GTCAGCTCGA-ACAAGCAATTGA
1653499 TGTATTTATA
63 TGTATTTATA
* *
1653509 TAAAGGTTTAGCCCGAACGGGTAGCCTGACATGATTATATGTACAGCTCGAACAAGCAATT
1 TAAAGGTTTAGCCCGAACGGGTAACCTGACACGATTATATGT-CAGCTCGAACAAGCAATT
1653570 AATATGTCTG
Statistics
Matches: 163, Mismatches: 35, Indels: 18
0.75 0.16 0.08
Matches are distributed among these distances:
72 3 0.02
73 142 0.87
74 9 0.06
75 8 0.05
76 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (72 bp):
TAAAGGTTTAGCCCGAACGGGTAACCTGACACGATTATATGTCAGCTCGAACAAGCAATTGATGT
ATTTATA
Found at i:1656412 original size:45 final size:45
Alignment explanation
Indices: 1656348--1656599 Score: 296
Period size: 45 Copynumber: 5.6 Consensus size: 45
1656338 CTTGAAAAAC
* * **
1656348 GAATAAGACCATAGTTGAAAGATA-TGGTGACACTATACTAGAAAT
1 GAATAAGACCATAGTTGAAAGACACT-ATGACACTATACCGGAAAT
* * *
1656393 GAATAAGACCATAATTGAAAGACACTATGGCACTAAACCGGAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGACACTATACCGGAAAT
** * *
1656438 GAATACTACCATAGTTGAAAGACAATATGGCACTATACCGGAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGACACTATACCGGAAAT
** *
1656483 GAATACTACCATAGTTGAAAGACACTATGACACTATACTGGAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGACACTATACCGGAAAT
* *
1656528 GAATAAGACCATAGTTGAAAGACATTATG-CAAC-ATGA-CGAAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGAC-ACTAT-ACCGGAAAT
*
1656572 AAATAAGACCATAGTTGAAAGACACTAT
1 GAATAAGACCATAGTTGAAAGACACTAT
1656600 AGCATCATGT
Statistics
Matches: 182, Mismatches: 22, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
44 34 0.19
45 147 0.81
46 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.22
Consensus pattern (45 bp):
GAATAAGACCATAGTTGAAAGACACTATGACACTATACCGGAAAT
Found at i:1656547 original size:21 final size:21
Alignment explanation
Indices: 1656478--1656547 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
1656468 CACTATACCG
**
1656478 GAAATGAATACTACCATAGTT
1 GAAATGAATAAGACCATAGTT
* * *
1656499 GAAA-GACACTATGACACTATACTG
1 GAAATGA-A-TAAGAC-C-ATAGTT
1656523 GAAATGAATAAGACCATAGTT
1 GAAATGAATAAGACCATAGTT
1656544 GAAA
1 GAAA
1656548 GACATTATGC
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 2 0.05
21 13 0.35
22 5 0.14
23 6 0.16
24 9 0.24
25 2 0.05
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (21 bp):
GAAATGAATAAGACCATAGTT
Found at i:1656637 original size:45 final size:44
Alignment explanation
Indices: 1656388--1656650 Score: 205
Period size: 45 Copynumber: 5.9 Consensus size: 44
1656378 CACTATACTA
* * *
1656388 GAAATGAATAAGACCATAATTGAAAGACACTATGGCA-C-TAAACCG
1 GAAATAAATAAGACCATAGTTGAAAGACACTAT-GCATCAT-GA-CG
* ** *
1656433 GAAATGAATACTACCATAGTTGAAAGACAATATGGCA-CTAT-ACCG
1 GAAATAAATAAGACCATAGTTGAAAGACACTAT-GCATC-ATGA-CG
* **
1656478 GAAATGAATACTACCATAGTTGAAAGACACTATGACA-CTAT-ACTG
1 GAAATAAATAAGACCATAGTTGAAAGACACTATG-CATC-ATGAC-G
* * *
1656523 GAAATGAATAAGACCATAGTTGAAAGACATTATGCAACATGACG
1 GAAATAAATAAGACCATAGTTGAAAGACACTATGCATCATGACG
* *
1656567 AAAATAAATAAGACCATAGTTGAAAGACACTATAGCATCATGTCG
1 GAAATAAATAAGACCATAGTTGAAAGACACTAT-GCATCATGACG
* * * * *
1656612 GAAATTAATAAGACCGTGGCTGAAAGACGCTATGGCATC
1 GAAATAAATAAGACCATAGTTGAAAGACACTAT-GCATC
1656651 CTTGAAAAAA
Statistics
Matches: 191, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
44 37 0.19
45 153 0.80
47 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (44 bp):
GAAATAAATAAGACCATAGTTGAAAGACACTATGCATCATGACG
Found at i:1666873 original size:2 final size:2
Alignment explanation
Indices: 1666866--1666893 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1666856 AAATTCATTG
1666866 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1666894 GCATATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1673510 original size:16 final size:16
Alignment explanation
Indices: 1673489--1673534 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
1673479 CAAACATGCT
1673489 TTAACACATTATCAAA
1 TTAACACATTATCAAA
1673505 TTAACACATTATCAAA
1 TTAACACATTATCAAA
1673521 TTAACACA-TATCAA
1 TTAACACATTATCAA
1673535 TAAGGCACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 6 0.20
16 24 0.80
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:1674698 original size:25 final size:25
Alignment explanation
Indices: 1674661--1674748 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 25
1674651 GTACATGTAT
* *
1674661 GCTCATACAAGCTATGAATCGGTAT
1 GCTCATACGAGCTATGAATCGGTAA
* *
1674686 GCTC-TCACGAGCTGTAAATCGGTAA
1 GCTCAT-ACGAGCTATGAATCGGTAA
* *
1674711 GCTCATACGAGCTACGAATCGATAA
1 GCTCATACGAGCTATGAATCGGTAA
* *
1674736 GCTCTTATGAGCT
1 GCTCATACGAGCT
1674749 GCAATCGGTA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
24 1 0.02
25 49 0.96
26 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATCGGTAA
Found at i:1674724 original size:50 final size:49
Alignment explanation
Indices: 1674661--1674759 Score: 126
Period size: 50 Copynumber: 2.0 Consensus size: 49
1674651 GTACATGTAT
* * *
1674661 GCTCATACAAGCTATGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATACAAGCTACGAATCGATAAGCTCTCACGAGCTG-AAATCGGTAA
* * * *
1674711 GCTCATACGAGCTACGAATCGATAAGCTCTTATGAGCTGCAATCGGTAA
1 GCTCATACAAGCTACGAATCGATAAGCTCTCACGAGCTGAAATCGGTAA
1674760 TCCTTAATGA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 9 0.21
50 33 0.79
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (49 bp):
GCTCATACAAGCTACGAATCGATAAGCTCTCACGAGCTGAAATCGGTAA
Found at i:1677441 original size:25 final size:25
Alignment explanation
Indices: 1677412--1677465 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
1677402 TGAACCTCTA
*
1677412 ACCTCTTTACCACACTTGTGACACC
1 ACCTCCTTACCACACTTGTGACACC
* * *
1677437 ACCTCCTTGCCACACTTGTGTCTCC
1 ACCTCCTTACCACACTTGTGACACC
1677462 ACCT
1 ACCT
1677466 TGCCACTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.19, C:0.43, G:0.09, T:0.30
Consensus pattern (25 bp):
ACCTCCTTACCACACTTGTGACACC
Found at i:1683233 original size:508 final size:508
Alignment explanation
Indices: 1682278--1683295 Score: 2036
Period size: 508 Copynumber: 2.0 Consensus size: 508
1682268 ATTAACTATT
1682278 TTTTTTAAAAAGTACTATTTTAATGATTTAATATTAAATTAAATTTAATACTTATCTTAATATTT
1 TTTTTTAAAAAGTACTATTTTAATGATTTAATATTAAATTAAATTTAATACTTATCTTAATATTT
1682343 ATCTTGTAGATAAACATTCTATTATTTTAATAACATTTAATATTAAATTTAATTTAATATTTATT
66 ATCTTGTAGATAAACATTCTATTATTTTAATAACATTTAATATTAAATTTAATTTAATATTTATT
1682408 TATCTTGATAAATATTATATTAATTGAATATTAAAGTGATTAAGTTTAATTATAGTTGAACTCTC
131 TATCTTGATAAATATTATATTAATTGAATATTAAAGTGATTAAGTTTAATTATAGTTGAACTCTC
1682473 TAAACTCTCCCTATATAAAGAGAGCCTTACGTCAATATTTACACATACTTGAATTTAAGAGAAGT
196 TAAACTCTCCCTATATAAAGAGAGCCTTACGTCAATATTTACACATACTTGAATTTAAGAGAAGT
1682538 TGTAGAGAGAAAATTCTCTAAAGAAATTAGTTTAGAAAATTTCTAGAGATGTTTTTCTTATTTAT
261 TGTAGAGAGAAAATTCTCTAAAGAAATTAGTTTAGAAAATTTCTAGAGATGTTTTTCTTATTTAT
1682603 AACTTGACCCAAAAGTTTAGAGAAATTGTGAAATTACTCCACTAGTAATTTTTGTGAAAGATTTT
326 AACTTGACCCAAAAGTTTAGAGAAATTGTGAAATTACTCCACTAGTAATTTTTGTGAAAGATTTT
1682668 CTGATTTGAAGTCAGTCCACATTCGACAAACGTGAGCTTGAGGATAGCGAAGAAGGATACTCGGT
391 CTGATTTGAAGTCAGTCCACATTCGACAAACGTGAGCTTGAGGATAGCGAAGAAGGATACTCGGT
1682733 CGAAGCGTTCAACCTAGACGAATCGAAAATGTACAATTTTGATTAAGTGTTTA
456 CGAAGCGTTCAACCTAGACGAATCGAAAATGTACAATTTTGATTAAGTGTTTA
1682786 TTTTTTAAAAAGTACTATTTTAATGATTTAATATTAAATTAAATTTAATACTTATCTTAATATTT
1 TTTTTTAAAAAGTACTATTTTAATGATTTAATATTAAATTAAATTTAATACTTATCTTAATATTT
1682851 ATCTTGTAGATAAACATTCTATTATTTTAATAACATTTAATATTAAATTTAATTTAATATTTATT
66 ATCTTGTAGATAAACATTCTATTATTTTAATAACATTTAATATTAAATTTAATTTAATATTTATT
1682916 TATCTTGATAAATATTATATTAATTGAATATTAAAGTGATTAAGTTTAATTATAGTTGAACTCTC
131 TATCTTGATAAATATTATATTAATTGAATATTAAAGTGATTAAGTTTAATTATAGTTGAACTCTC
1682981 TAAACTCTCCCTATATAAAGAGAGCCTTACGTCAATATTTACACATACTTGAATTTAAGAGAAGT
196 TAAACTCTCCCTATATAAAGAGAGCCTTACGTCAATATTTACACATACTTGAATTTAAGAGAAGT
1683046 TGTAGAGAGAAAATTCTCTAAAGAAATTAGTTTAGAAAATTTCTAGAGATGTTTTTCTTATTTAT
261 TGTAGAGAGAAAATTCTCTAAAGAAATTAGTTTAGAAAATTTCTAGAGATGTTTTTCTTATTTAT
1683111 AACTTGACCCAAAAGTTTAGAGAAATTGTGAAATTACTCCACTAGTAATTTTTGTGAAAGATTTT
326 AACTTGACCCAAAAGTTTAGAGAAATTGTGAAATTACTCCACTAGTAATTTTTGTGAAAGATTTT
1683176 CTGATTTGAAGTCAGTCCACATTCGACAAACGTGAGCTTGAGGATAGCGAAGAAGGATACTCGGT
391 CTGATTTGAAGTCAGTCCACATTCGACAAACGTGAGCTTGAGGATAGCGAAGAAGGATACTCGGT
1683241 CGAAGCGTTCAACCTAGACGAATCGAAAATGTACAATTTTGATTAAGTGTTTA
456 CGAAGCGTTCAACCTAGACGAATCGAAAATGTACAATTTTGATTAAGTGTTTA
1683294 TT
1 TT
1683296 ACTTTAGATA
Statistics
Matches: 510, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
508 510 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (508 bp):
TTTTTTAAAAAGTACTATTTTAATGATTTAATATTAAATTAAATTTAATACTTATCTTAATATTT
ATCTTGTAGATAAACATTCTATTATTTTAATAACATTTAATATTAAATTTAATTTAATATTTATT
TATCTTGATAAATATTATATTAATTGAATATTAAAGTGATTAAGTTTAATTATAGTTGAACTCTC
TAAACTCTCCCTATATAAAGAGAGCCTTACGTCAATATTTACACATACTTGAATTTAAGAGAAGT
TGTAGAGAGAAAATTCTCTAAAGAAATTAGTTTAGAAAATTTCTAGAGATGTTTTTCTTATTTAT
AACTTGACCCAAAAGTTTAGAGAAATTGTGAAATTACTCCACTAGTAATTTTTGTGAAAGATTTT
CTGATTTGAAGTCAGTCCACATTCGACAAACGTGAGCTTGAGGATAGCGAAGAAGGATACTCGGT
CGAAGCGTTCAACCTAGACGAATCGAAAATGTACAATTTTGATTAAGTGTTTA
Found at i:1696880 original size:13 final size:13
Alignment explanation
Indices: 1696862--1696886 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1696852 GTAAACACAC
1696862 AAAAGAAAAAAAG
1 AAAAGAAAAAAAG
1696875 AAAAGAAAAAAA
1 AAAAGAAAAAAA
1696887 AACTGCGTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:1702696 original size:21 final size:21
Alignment explanation
Indices: 1702654--1702696 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1702644 CTTTTGAATC
**
1702654 ATTTTATTATTTTATTTATAT
1 ATTTTATTATTTTATACATAT
*
1702675 ATTTTATTATTTTATACGTAT
1 ATTTTATTATTTTATACATAT
1702696 A
1 A
1702697 CCTTTTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
ATTTTATTATTTTATACATAT
Found at i:1703162 original size:178 final size:178
Alignment explanation
Indices: 1702863--1710864 Score: 15110
Period size: 178 Copynumber: 44.9 Consensus size: 178
1702853 CATGTTTTTT
1702863 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1702928 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1702993 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1703041 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1703106 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1703171 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1703219 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1703284 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1703349 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1703397 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1703462 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1703527 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1703575 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1703640 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1703705 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1703753 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1703818 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1703883 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1703931 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1703996 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1704061 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1704109 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1704174 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1704239 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1704287 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1704352 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1704417 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1704465 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1704530 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1704595 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1704643 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1704708 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1704773 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1704821 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1704886 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1704951 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1704999 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1705064 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1705129 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1705177 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1705242 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1705307 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1705355 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1705420 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1705485 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1705533 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1705598 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1705663 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1705711 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1705776 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1705841 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1705889 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1705954 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1706019 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1706067 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1706132 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1706197 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1706245 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1706310 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1706375 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1706423 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1706488 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1706553 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1706601 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1706666 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1706731 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1706779 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1706844 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1706909 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1706957 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1707022 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1707087 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1707135 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1707200 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1707265 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1707313 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1707378 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1707443 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1707491 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1707556 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1707621 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1707669 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1707734 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1707799 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1707847 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1707912 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1707977 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1708025 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1708090 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1708155 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1708203 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1708268 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1708333 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1708381 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1708446 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1708511 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1708559 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1708624 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1708689 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1708737 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1708802 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1708867 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1708915 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1708980 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1709045 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1709093 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1709158 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1709223 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1709271 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1709336 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1709401 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1709449 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1709514 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1709579 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1709627 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1709692 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1709757 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1709805 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1709870 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1709935 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1709983 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1710048 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
1710113 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
1710161 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
* *
1710226 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATTAAATAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
* *** * * * * * *
1710291 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTAAATAAAACAGA
131 CATATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGACAACATA
** *** * * * *** *
1710340 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATTAAATAAAACAGATCTTGTCTTCCCATACTGGT
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGG-
* * * * * * * * * * * *
1710405 GGCGAAGTAGATTAAATAAAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTAAATAAA
65 CGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAA
* *** * * * * * *
1710470 ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTAAATAAAACAGA
130 ACATATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGACAACATA
** * ** * * *
1710520 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAATAAATCTTATCTTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
* * * ** * ** *** * * * **
1710585 GTGAGGTAGAT-TGAAGAAAGTAAATCTTATCTTCATGTATTGG-CGTGAAGTAGATTGAAGAAA
66 GTGAAGTAGATCAG-AGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAA
* * * * *
1710648 ACAGATCTTGTCTACATGTATTGGCGTGAAGTAGATCCAAGACAACAGA
130 ACATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
* * * ** * * * *
1710697 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCG-AGAAAACAGATATTGTCTTCATGTATTGGC
1 TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
* * * * *
1710761 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAA
66 GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
** * *
1710826 CGGATCTTGTCTTCATGTATTGTCGTGAAGTAGATCAAA
131 CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAA
1710865 TACAGCAGAT
Statistics
Matches: 7722, Mismatches: 97, Indels: 11
0.99 0.01 0.00
Matches are distributed among these distances:
176 57 0.01
177 104 0.01
178 7302 0.95
179 100 0.01
180 159 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (178 bp):
TCTTGTCTTCCCATACTGGTGGCGAAACAGACCGAAGAAAGCAGATCTTGTATTCATGTATTGGC
GTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAA
CATATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGACAACATA
Found at i:1710601 original size:44 final size:44
Alignment explanation
Indices: 1710543--1710860 Score: 224
Period size: 44 Copynumber: 7.2 Consensus size: 44
1710533 TACTGGTGGC
*
1710543 GAAGTAGATCGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
* *
1710587 GAGGTAGATTGAAGAAAGTAAATCTTATCTTCATGTATTGGCGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
* * * *
1710631 GAAGTAGATTGAAGAAAACAGATCTTGTCTACATGTATTGGCGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
** * * * * * *** * *
1710675 GAAGTAGATCCAAGACAACAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGG-CGT
* * * * * *
1710720 GGAGTAGATCG-AGAAAACAGATATTGTCTTCATGTATTGGCGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
** * ** * * *** * *
1710763 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGG-CGT
* *** * *
1710808 GAAGTAGATCGAAGAAAACGGATCTTGTCTTCATGTATTGTCGT
1 GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
1710852 GAAGTAGAT
1 GAAGTAGAT
1710861 CAAATACAGC
Statistics
Matches: 223, Mismatches: 48, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
43 11 0.05
44 167 0.75
45 45 0.20
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (44 bp):
GAAGTAGATTGAAGAAAATAAATCTTATCTTCATGTATTGGCGT
Done.