Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1935

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 719

Length: 1199
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35


Found at i:80 original size:46 final size:47

Alignment explanation


    Indices: 13--104  Score: 177
    Period size: 46  Copynumber: 2.0  Consensus size: 47

          3 GGAATAGACA

                                                           
         13 CGATTAAACCCACTGAAGGTCAATTCGA-GAAGTACCGAACCATATG
          1 CGATTAAACCCACTGAAGGTCAATTCGAGGAAGTACCGAACCATATG

                                                          
         59 CGATTAAACCCACTGAAGGTCAATTCGAGGAAGTACCGAACCATAT
          1 CGATTAAACCCACTGAAGGTCAATTCGAGGAAGTACCGAACCATAT

        105 TCGACATGAT


Statistics
Matches: 45,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  46   28  0.62
  47   17  0.38

ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20


Consensus pattern (47 bp):   
CGATTAAACCCACTGAAGGTCAATTCGAGGAAGTACCGAACCATATG
Done.