Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1248

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2271
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:1976 original size:30 final size:30

Alignment explanation


    Indices: 1913--2017  Score: 120
    Period size: 30  Copynumber: 3.5  Consensus size: 30

       1903 GTCGCAGAGT

                        * *   * * *     * 
       1913 AGTTCATATCACTCGGACCTTGCCAGTTTA
          1 AGTTCATATCACCCAGACATAGGCAGTTCA

                                   **     
       1943 AGTTCATATCACCCAGACATAGGTGGTTCA
          1 AGTTCATATCACCCAGACATAGGCAGTTCA

                                         *
       1973 AGTTCATATCACCCAGACATAGGCAGTTCG
          1 AGTTCATATCACCCAGACATAGGCAGTTCA

                   *       
       2003 AGTTCATTTCACCCA
          1 AGTTCATATCACCCA

       2018 AAACAACCAT


Statistics
Matches: 63,  Mismatches: 12, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  30   63  1.00

ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29


Consensus pattern (30 bp):   
AGTTCATATCACCCAGACATAGGCAGTTCA
Done.