genome.fa.s3491.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold272
Parameters: 2 7 7 80 10 50 1000
Length:  693825

Tables:   1   2   3   

This is table  2  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341167--341213	20	2.3	20	100	0	94	61	6	4	27	1.39
343134--343217	44	1.9	44	90	0	132	46	13	13	27	1.79
345604--345689	31	2.8	30	81	10	77	39	18	17	24	1.92
345604--345662	29	2.0	31	83	12	79	38	22	16	22	1.93
345641--345720	31	2.6	31	86	4	99	41	13	20	25	1.88
346091--346160	16	4.2	16	76	9	61	54	1	4	40	1.29
346122--346160	18	2.3	16	86	8	51	53	2	2	41	1.28
347585--347721	57	2.4	57	90	0	202	35	19	10	33	1.87
347845--347918	29	2.6	29	84	0	103	25	24	20	29	1.99
351702--351736	3	11.7	3	100	0	70	34	31	0	34	1.58
357681--357709	12	2.4	12	100	0	58	17	20	0	62	1.33
357669--357708	18	2.2	18	86	0	53	17	17	0	65	1.28
360284--360368	44	1.9	44	86	9	120	38	11	23	25	1.89
360337--360494	63	2.5	63	90	0	244	35	14	27	22	1.93
364247--364363	37	3.2	37	74	19	111	38	2	4	54	1.34
364393--364451	16	3.7	16	71	8	57	44	3	1	50	1.28
365942--365979	3	12.7	3	100	0	76	34	0	0	65	0.93
366104--366133	2	15.0	2	100	0	60	50	0	0	50	1.00
366466--366762	112	2.7	109	84	5	400	29	14	19	36	1.91
368908--368959	26	2.0	26	100	0	104	46	11	11	30	1.76
371246--371288	16	2.6	17	85	3	61	30	2	2	65	1.18
371230--371274	19	2.4	19	85	10	58	28	4	2	64	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374855--374917	32	2.0	32	90	3	101	4	9	9	76	1.15
374873--374927	15	3.7	15	79	15	60	7	5	7	80	1.04
386235--386697	231	2.0	231	96	0	854	30	16	23	29	1.96
389717--390532	44	18.8	42	71	15	384	29	20	23	27	1.99
389662--390301	217	2.9	217	90	0	1012	29	20	22	27	1.98
390150--390530	129	2.9	129	86	2	494	28	19	23	27	1.99
390151--390338	40	4.5	40	70	16	128	27	21	21	29	1.99
394007--394069	31	2.0	31	96	0	117	17	12	11	58	1.62
398200--398235	16	2.2	16	95	0	63	41	5	30	22	1.76
398217--398321	46	2.5	44	81	12	121	29	4	30	35	1.78
400257--400360	49	2.1	49	85	1	138	51	11	8	27	1.67
401672--402143	111	4.3	111	99	0	935	52	15	14	17	1.74
402852--402888	19	1.9	19	94	0	65	27	5	18	48	1.70
403035--403079	9	4.7	10	76	18	51	37	0	0	62	0.96
412566--412601	2	18.0	2	100	0	72	50	0	0	50	1.00
413733--413804	36	2.0	36	88	0	108	31	27	12	27	1.93
417626--417708	11	7.9	11	75	20	79	56	0	2	40	1.12
417639--417697	29	2.0	30	86	3	84	59	0	3	37	1.14
417842--417882	14	2.9	14	85	7	55	39	0	2	58	1.11
418237--418268	14	2.3	14	94	0	55	40	3	0	56	1.15
419355--419387	11	2.8	12	86	4	50	36	3	12	48	1.56
425854--425902	20	2.5	20	83	3	64	24	22	10	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430317--430422	33	3.2	34	71	19	107	28	5	25	40	1.78
430295--430422	66	2.0	66	84	9	174	27	6	25	40	1.79
430861--431054	39	4.9	39	84	4	239	31	2	19	46	1.63
433818--433855	20	1.9	20	94	0	67	47	13	18	21	1.82
434458--434532	36	2.1	36	100	0	150	34	25	9	30	1.87
438623--438689	29	2.3	29	84	0	80	34	22	11	31	1.90
440073--440164	33	2.8	33	81	6	123	25	23	33	17	1.96
440268--440318	20	2.5	21	78	15	54	39	7	29	23	1.83
452008--452055	22	2.2	22	82	10	62	45	14	4	35	1.64
452018--452118	21	4.7	23	83	9	76	39	15	7	36	1.77
452044--452119	21	3.7	21	84	7	102	38	15	9	36	1.80
452057--452120	19	3.3	19	86	4	83	37	17	9	35	1.82
455119--455149	16	1.9	16	93	0	53	70	12	0	16	1.16
457175--457515	170	2.0	171	99	0	675	27	16	18	37	1.92
459003--459030	13	2.2	13	100	0	56	28	14	14	42	1.84
459779--459804	9	2.9	9	100	0	52	88	0	0	11	0.52
463024--463141	60	2.0	60	83	5	150	29	18	17	33	1.94
463730--463867	48	2.9	48	100	0	276	32	25	15	26	1.95
465395--465550	64	2.4	64	97	0	294	55	0	8	35	1.30
465459--465656	106	1.9	107	95	1	362	54	0	9	36	1.36
465566--465719	63	2.4	64	93	3	267	55	0	9	35	1.32
465395--465895	239	2.1	233	85	5	659	54	0	8	35	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465606--466052	176	2.5	174	89	4	677	54	1	8	35	1.41
465949--466031	27	3.0	27	70	19	71	53	1	8	37	1.39
472288--472314	10	2.7	10	100	0	54	51	0	7	40	1.30
472336--472370	18	1.9	18	94	0	61	51	2	8	37	1.47
472298--472434	55	2.5	56	83	10	174	47	6	8	37	1.59
472344--472461	55	2.1	55	90	3	184	44	6	10	38	1.65
472457--472621	18	9.7	18	65	16	91	29	0	24	46	1.53
472550--472683	29	4.8	29	76	12	136	28	0	25	45	1.59
472467--472664	82	2.4	82	92	3	328	27	0	26	45	1.58
472510--472572	29	2.5	23	73	26	72	33	0	20	46	1.51
472528--472597	35	2.0	34	88	2	104	32	0	21	45	1.52
473002--473212	28	7.4	28	79	11	180	28	0	25	45	1.58
473068--473127	18	3.3	18	72	9	68	21	0	35	43	1.53
473011--473106	23	3.9	24	79	9	104	26	0	30	43	1.55
475242--475294	10	5.1	10	75	8	52	69	0	0	30	0.88
475242--475307	32	2.1	32	94	2	116	65	1	0	33	1.02
475320--475419	51	2.0	51	97	0	191	42	0	28	30	1.56
475393--475443	22	2.3	22	87	12	86	39	1	31	27	1.68
477124--477172	17	2.8	17	79	11	55	30	8	16	44	1.76
479488--479787	90	3.3	90	77	3	282	50	12	8	29	1.69
481281--481366	40	2.2	40	91	0	136	46	9	3	40	1.53
485374--485409	18	2.1	18	89	5	56	47	5	0	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490931--490975	23	2.0	23	81	0	54	66	4	2	26	1.22
492675--492852	44	4.1	43	70	11	112	29	22	17	30	1.97
492838--492931	44	2.1	44	84	3	118	25	22	23	28	1.99
492937--493341	44	8.8	44	67	18	173	27	20	18	33	1.96
493269--493357	44	2.0	44	86	0	124	24	22	21	31	1.98
492787--493395	142	4.3	142	91	0	961	27	20	19	32	1.97
505180--505665	69	7.1	69	80	4	473	36	23	22	18	1.95
505180--505665	138	3.5	139	77	6	524	36	23	22	18	1.95
518677--518734	25	2.4	25	97	2	109	27	3	25	43	1.71
518946--519049	41	2.5	41	95	3	183	26	18	28	25	1.98
519028--519127	41	2.4	41	96	0	182	27	22	29	22	1.99
520146--520191	21	2.2	21	100	0	92	28	6	32	32	1.83
520325--520676	126	2.8	126	90	2	566	28	15	22	32	1.95
524597--524702	23	4.7	23	82	3	126	25	0	29	45	1.54
524718--524886	44	3.8	43	75	15	171	43	13	0	43	1.47
524698--524833	25	5.7	25	75	15	137	41	13	0	44	1.50
524718--524898	43	4.0	43	75	14	143	43	12	0	43	1.47
525598--525636	19	2.0	21	85	10	55	30	20	20	28	1.98
527028--527078	22	2.3	22	93	0	84	39	0	29	31	1.57
535900--535942	21	2.0	22	86	13	63	48	0	18	32	1.48
537130--537160	15	2.1	15	93	0	53	32	12	22	32	1.92
553739--553774	16	2.2	17	90	5	56	61	0	13	25	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558564--558628	26	2.4	28	73	19	66	75	1	18	4	1.05
558564--558633	27	2.6	25	77	8	68	75	1	18	4	1.04
558564--558634	6	11.8	6	76	16	51	76	1	18	4	1.03
561928--561983	29	1.9	29	85	7	78	39	5	3	51	1.42
568452--568502	17	2.8	18	76	11	50	60	5	0	33	1.21
568658--568705	21	2.2	23	89	10	75	56	8	14	20	1.64
588448--588584	69	2.0	69	92	2	231	38	21	10	28	1.88
591407--591490	27	2.9	27	84	10	87	17	26	26	29	1.98
591436--591521	33	2.6	33	98	0	163	19	25	23	31	1.98
594383--594429	21	2.2	22	77	11	53	44	8	17	29	1.78

Tables:   1   2   3