Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold542
Parameters: 2 7 7 80 10 50 1000
Length:  72666

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6204--6334
62
2.1
63
84
10
173
41
4
9
44
1.57
7852--8896
316
3.4
297
79
11
1045
38
20
17
23
1.93
8435--8948
161
3.2
160
85
6
661
39
19
17
23
1.92
14668--14733
33
2.0
33
84
0
87
45
6
12
36
1.66
17680--17743
29
2.2
27
76
15
65
37
15
26
20
1.92
17985--18035
4
12.8
4
100
0
102
25
0
23
50
1.49
19933--20062
63
2.1
63
98
0
251
24
11
40
23
1.87
21554--21617
22
2.9
23
79
4
69
37
26
10
25
1.89
21518--21713
104
1.9
102
90
2
311
31
21
15
32
1.94
24043--24074
16
2.0
16
100
0
64
37
0
12
50
1.41
24839--24863
12
2.1
12
100
0
50
24
16
24
36
1.94
36925--36962
17
2.2
18
85
4
51
18
5
7
68
1.34
37086--37124
4
9.0
4
84
15
51
69
5
2
23
1.21
38138--38172
16
2.2
16
89
0
52
28
14
14
42
1.84
38226--38278
16
3.4
16
74
10
56
22
9
20
47
1.79
38223--38285
30
2.1
31
90
3
101
26
7
20
44
1.79
51399--51468
31
2.3
30
85
9
88
42
22
10
24
1.84
54795--54836
22
1.9
22
85
0
57
64
0
0
35
0.94
58640--58671
2
16.0
2
93
0
55
50
3
0
46
1.17
60542--60712
86
2.0
86
95
0
306
36
17
16
29
1.92
67246--67307
23
2.7
23
85
5
72
29
17
14
38
1.89
68446--68756
154
2.0
155
99
0
615
34
10
10
44
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69360--69451
31
3.1
30
84
7
100
53
6
5
34
1.50
69811--69839
3
9.7
3
100
0
58
31
0
0
68
0.89

Tables:   1

The End!