Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2426

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 568

Length: 947
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35


Found at i:484 original size:190 final size:189

Alignment explanation


    Indices: 141--523  Score: 660
    Period size: 190  Copynumber: 2.0  Consensus size: 189

        131 TCCCTATCTT

                            *          *        *      *                     
        141 ATTT-TGTCCGTACGCTCGCCCGGCCCTGTCCGTGCGTCTGTTTATCCGCTTTTCTTTGCAATAT
          1 ATTTATGTCCGTACGCCCGCCCGGCCCAGTCCGTGCATCTGTTAATCCGCTTTTCTTTGCAATAT

                                                                        *    
        205 TTATTACTTTTGCGTAAGTTATTGATACAATGATGTTTAGTATGAAAGCCGGGTATCGTTTGGGA
         66 TTATTACTTTTGCGTAAGTTATTGATACAATGATGTTTAGTATGAAAGCCGGGTATCGTTCGGGA

                             *                                  *      
        270 ACAAATTAGATACTTTTTGCATTAATTATATTGTATTCTTATCAAAATTCAGTCATTTC
        131 ACAAATTAGATACTTTTCGCATTAATTATATTGTATTCTTATCAAAATTCAGCCATTTC

                        *                                                    
        329 ATTTATGTCCGTGCGCCCGGCCCGGCCCAGTCCGTGCATCTGTTAATCCGCTTTTCTTTGCAATA
          1 ATTTATGTCCGTACGCCC-GCCCGGCCCAGTCCGTGCATCTGTTAATCCGCTTTTCTTTGCAATA

                                            *                                
        394 TTTATTACTTTTGCGTAAGTTATTGATACAATTATGTTTAGTATGAAAGCCGGGTATCGTTCGGG
         65 TTTATTACTTTTGCGTAAGTTATTGATACAATGATGTTTAGTATGAAAGCCGGGTATCGTTCGGG

                                                                   *    
        459 AACAAATTAGATACTTTTCGCATTAATTATATTGTATTCTTATCAAAATTCAGCCTTTTC
        130 AACAAATTAGATACTTTTCGCATTAATTATATTGTATTCTTATCAAAATTCAGCCATTTC

                 
        519 ATTTA
          1 ATTTA

        524 AGGTCCGTCC


Statistics
Matches: 183,  Mismatches: 10, Indels: 2
        0.94            0.05        0.01

Matches are distributed among these distances:
 188    4  0.02
 189   11  0.06
 190  168  0.92

ACGTcount: A:0.23, C:0.19, G:0.17, T:0.40


Consensus pattern (189 bp):   
ATTTATGTCCGTACGCCCGCCCGGCCCAGTCCGTGCATCTGTTAATCCGCTTTTCTTTGCAATAT
TTATTACTTTTGCGTAAGTTATTGATACAATGATGTTTAGTATGAAAGCCGGGTATCGTTCGGGA
ACAAATTAGATACTTTTCGCATTAATTATATTGTATTCTTATCAAAATTCAGCCATTTC
Done.