Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1012

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3371
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:2385 original size:17 final size:17

Alignment explanation


    Indices: 2363--2401  Score: 71
    Period size: 16  Copynumber: 2.4  Consensus size: 17

       2353 CCCAACTCAG

                             
       2363 CCCAAAAATTACCTAGA
          1 CCCAAAAATTACCTAGA

                             
       2380 CCC-AAAATTACCTAGA
          1 CCCAAAAATTACCTAGA

                  
       2396 CCCAAA
          1 CCCAAA

       2402 TACCAACTTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  16   16  0.76
  17    5  0.24

ACGTcount: A:0.46, C:0.33, G:0.05, T:0.15


Consensus pattern (17 bp):   
CCCAAAAATTACCTAGA

Done.