Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1766

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 791

Length: 1319
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30


Found at i:373 original size:11 final size:11

Alignment explanation


    Indices: 357--384  Score: 56
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        347 TTCTGCTTAT

                       
        357 AATATTGACAC
          1 AATATTGACAC

                       
        368 AATATTGACAC
          1 AATATTGACAC

                  
        379 AATATT
          1 AATATT

        385 AGGAAAACAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   17  1.00

ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32


Consensus pattern (11 bp):   
AATATTGACAC
Done.