Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold981

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3634
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33


Found at i:55 original size:20 final size:20

Alignment explanation


    Indices: 13--52  Score: 73
    Period size: 19  Copynumber: 2.0  Consensus size: 20

          3 CACAAGTAAC

                                
         13 TAATAAAAATTAAACCTAAT
          1 TAATAAAAATTAAACCTAAT

                                
         33 TAAT-AAAATTAAACCTAAT
          1 TAATAAAAATTAAACCTAAT

             
         52 T
          1 T

         53 TAAGAAGAGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19   16  0.80
  20    4  0.20

ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33


Consensus pattern (20 bp):   
TAATAAAAATTAAACCTAAT
Done.