Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold659

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12715
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.27

Warning! 1752 characters in sequence are not A, C, G, or T


Found at i:4355 original size:40 final size:40

Alignment explanation


    Indices: 4300--4377  Score: 120
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       4290 TAAATAAAAG

                     *                              
       4300 AAAGTCCAATAACTCAATTACTAACTAAGATGAGTTTAAT
          1 AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTAAT

                    *       *   *                 
       4340 AAAGTCCAGCAACTCATTTATTAACTAAGATGAGTTTA
          1 AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTA

       4378 TTTAAATTAA


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  40   34  1.00

ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31


Consensus pattern (40 bp):   
AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTAAT
Done.