Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2691

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 875
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34


Found at i:466 original size:11 final size:11

Alignment explanation


    Indices: 452--492  Score: 57
    Period size: 11  Copynumber: 3.8  Consensus size: 11

        442 ATTGAATACA

                       
        452 AATTTTTTTTG
          1 AATTTTTTTTG

                       
        463 AATTTTTTTT-
          1 AATTTTTTTTG

            *        * 
        473 TATTTTTTTCG
          1 AATTTTTTTTG

                     
        484 AATTTTTTT
          1 AATTTTTTT

        493 CCCTTTTTTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  10    8  0.31
  11   18  0.69

ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76


Consensus pattern (11 bp):   
AATTTTTTTTG

Found at i:477 original size:21 final size:21

Alignment explanation


    Indices: 453--492  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        443 TTGAATACAA

                    *            
        453 ATTTTTTTTGAATTTTTTTTT
          1 ATTTTTTTCGAATTTTTTTTT

                               
        474 ATTTTTTTCGAATTTTTTT
          1 ATTTTTTTCGAATTTTTTT

        493 CCCTTTTTTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.15, C:0.03, G:0.05, T:0.78


Consensus pattern (21 bp):   
ATTTTTTTCGAATTTTTTTTT

Found at i:499 original size:21 final size:21

Alignment explanation


    Indices: 453--502  Score: 64
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        443 TTGAATACAA

                    *          **
        453 ATTTTTTTTGAATTTTTTTTT
          1 ATTTTTTTCGAATTTTTTTCC

                                 
        474 ATTTTTTTCGAATTTTTTTCC
          1 ATTTTTTTCGAATTTTTTTCC

            *       
        495 CTTTTTTT
          1 ATTTTTTT

        503 ACAATACCGA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.12, C:0.08, G:0.04, T:0.76


Consensus pattern (21 bp):   
ATTTTTTTCGAATTTTTTTCC
Done.