genome.fa.s3598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold575
Parameters: 2 7 7 80 10 50 1000
Length:  120594

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1409--1450	14	2.9	14	85	3	57	78	2	2	16	0.96
2262--2296	13	2.7	13	90	0	52	42	11	0	45	1.40
2702--2832	50	2.6	52	78	8	144	38	12	14	34	1.85
4510--4566	18	3.1	18	73	12	53	14	24	0	61	1.33
6603--6648	20	2.3	20	92	0	74	8	2	10	78	1.05
8065--8181	50	2.3	50	85	5	146	36	13	17	32	1.89
8087--8196	50	2.2	52	83	5	143	38	11	15	34	1.84
13300--13333	16	2.1	16	88	0	50	47	8	2	41	1.50
13376--13419	17	2.6	18	82	7	56	52	11	0	36	1.38
13477--13505	11	2.7	11	94	5	51	34	10	24	31	1.89
19986--20054	21	3.3	21	74	11	70	27	30	24	17	1.97
20236--20441	84	2.4	84	80	5	229	32	24	16	26	1.96
20400--20481	42	2.0	42	87	4	121	35	25	13	25	1.93
20641--20688	21	2.3	21	85	7	62	31	31	20	16	1.95
20656--20856	84	2.4	84	85	1	278	28	29	16	24	1.97
20013--20751	105	7.0	105	74	9	567	30	27	16	24	1.97
20555--21102	189	2.9	189	79	11	589	29	28	17	24	1.97
20077--20859	420	1.9	420	85	2	1106	30	27	16	24	1.96
20824--20877	21	2.6	21	85	5	65	29	25	20	24	1.99
20807--21076	90	3.0	90	90	0	423	30	27	17	23	1.97
20920--20964	21	2.1	21	88	8	65	33	26	20	20	1.97
26311--26402	41	2.2	41	82	3	105	14	14	30	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27099--27146	20	2.3	20	86	10	62	18	0	41	39	1.51
27099--27146	7	7.0	7	79	11	55	18	0	41	39	1.51
27830--28944	337	3.3	332	80	6	1162	31	16	17	33	1.93
28888--29080	63	3.1	63	99	0	379	27	14	17	40	1.89
29195--29246	15	3.8	13	76	16	52	67	5	25	1	1.23
29260--29496	117	2.0	118	97	1	449	36	14	18	30	1.91
29776--29819	22	2.0	22	95	0	79	34	4	36	25	1.76
30620--30678	30	2.0	30	83	6	75	28	15	25	30	1.96
31835--31898	13	4.8	13	76	17	60	45	14	1	39	1.54
31841--32033	39	5.0	37	77	13	167	42	11	2	43	1.53
31841--31982	40	3.7	39	77	11	150	43	12	2	41	1.54
31930--32020	18	4.9	18	75	15	87	42	12	1	43	1.49
31866--31970	31	3.6	31	68	18	89	41	12	2	42	1.57
31925--32013	22	4.2	22	70	21	57	40	14	1	43	1.53
31930--31990	17	3.5	17	86	4	86	44	13	0	42	1.43
32395--32637	44	5.5	44	98	0	459	51	14	2	31	1.54
32812--32868	25	2.3	25	78	6	62	47	17	3	31	1.65
32883--32986	44	2.3	44	90	3	154	49	16	1	32	1.57
52152--52197	21	2.2	21	88	0	65	36	15	41	6	1.73
52572--52987	43	9.7	43	84	5	468	29	21	25	23	1.99
52555--52989	85	5.1	85	82	3	462	30	20	25	23	1.99
52555--52983	128	3.4	127	84	3	486	30	21	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53632--53895	131	2.0	132	99	0	521	21	28	17	32	1.96
56067--56112	11	4.1	11	80	5	56	67	2	6	23	1.25
56067--56112	12	4.1	12	83	10	62	67	2	6	23	1.25
56276--56708	216	2.0	217	99	0	859	33	18	20	28	1.95
58130--58176	20	2.3	20	88	0	67	25	31	17	25	1.97
59565--59619	29	2.0	27	82	13	67	60	10	14	14	1.60
62224--62262	20	2.0	20	89	0	60	23	12	30	33	1.92
65672--65709	19	2.0	20	94	5	69	42	15	28	13	1.85
65977--66014	19	2.0	20	94	5	69	18	34	10	36	1.85
66208--66247	16	2.6	15	80	4	53	25	5	5	65	1.34
66422--66463	16	2.6	16	96	3	75	33	11	16	38	1.86
96257--96287	15	2.1	15	93	0	53	41	22	12	22	1.88
97876--97934	19	3.2	18	83	7	73	3	16	6	72	1.20
97864--97909	24	1.9	24	82	8	58	4	21	4	69	1.24
97869--97940	37	1.9	38	82	2	92	5	18	5	70	1.26
97876--97934	18	3.1	19	85	9	68	3	16	6	72	1.20
97854--97953	38	2.6	37	72	13	87	5	16	4	75	1.14
100372--100410	16	2.4	16	91	0	60	15	10	2	71	1.23
103714--103783	25	2.8	26	82	6	99	42	17	22	17	1.88
109699--109747	18	2.6	19	78	18	57	73	2	2	22	1.04
111673--112187	150	3.4	150	100	0	1030	24	24	15	35	1.95
113499--113563	22	2.9	22	81	2	76	36	6	32	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114418--114459	10	4.3	10	78	6	50	28	11	23	35	1.91

Tables:   1

The End!