Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4450

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 318

Length: 531
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.27


Found at i:440 original size:10 final size:10

Alignment explanation


    Indices: 425--457  Score: 66
    Period size: 10  Copynumber: 3.3  Consensus size: 10

        415 ATTTGCCAAA

                      
        425 ACACAAACAC
          1 ACACAAACAC

                      
        435 ACACAAACAC
          1 ACACAAACAC

                      
        445 ACACAAACAC
          1 ACACAAACAC

               
        455 ACA
          1 ACA

        458 AACACATTCC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   23  1.00

ACGTcount: A:0.61, C:0.39, G:0.00, T:0.00


Consensus pattern (10 bp):   
ACACAAACAC
Done.