Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4390

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 324

Length: 540
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33


Found at i:452 original size:41 final size:41

Alignment explanation


    Indices: 396--500  Score: 111
    Period size: 41  Copynumber: 2.6  Consensus size: 41

        386 TGATTCAGTA

                   *  *               *          *   
        396 CACCGGCTTTTAGCCTGCTAGACCTATAGTCCGAAATGTAT
          1 CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAAATATAT

                                   *       *   *   * 
        437 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
          1 CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAAATATAT

                *    *      *      
        478 CACCTGCATCAAGCCTACTAGAC
          1 CACCGGCATTAAGCCTGCTAGAC

        501 ACATAGCCTG


Statistics
Matches: 53,  Mismatches: 11, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  41   53  1.00

ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27


Consensus pattern (41 bp):   
CACCGGCATTAAGCCTGCTAGACCTAAAGTCCGAAATATAT
Done.