Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1302

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2084
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.31


Found at i:467 original size:67 final size:67

Alignment explanation


    Indices: 386--520  Score: 252
    Period size: 67  Copynumber: 2.0  Consensus size: 67

        376 AACTGATTAT

                     *                                                       
        386 CAGATTCAAGAATAAAATACCAATTATATATTCGTTCTTCCGAAGTAAAATCAAATGACTTTGCC
          1 CAGATTCAAAAATAAAATACCAATTATATATTCGTTCTTCCGAAGTAAAATCAAATGACTTTGCC

              
        451 AA
         66 AA

                                     *                                       
        453 CAGATTCAAAAATAAAATACCAATTGTATATTCGTTCTTCCGAAGTAAAATCAAATGACTTTGCC
          1 CAGATTCAAAAATAAAATACCAATTATATATTCGTTCTTCCGAAGTAAAATCAAATGACTTTGCC

              
        518 AA
         66 AA

             
        520 C
          1 C

        521 TCTGGAGAAA


Statistics
Matches: 66,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  67   66  1.00

ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30


Consensus pattern (67 bp):   
CAGATTCAAAAATAAAATACCAATTATATATTCGTTCTTCCGAAGTAAAATCAAATGACTTTGCC
AA

Done.