Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2851

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 501

Length: 836
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.33

Warning! 78 characters in sequence are not A, C, G, or T


Found at i:114 original size:42 final size:42

Alignment explanation


    Indices: 55--137  Score: 157
    Period size: 42  Copynumber: 2.0  Consensus size: 42

         45 AAAATTCAAA

                                       *              
         55 GGATAAGAACAAGAGTTCAAATGTTTGGATTTCAAACGTTTT
          1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT

                                                     
         97 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
          1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT

        138 CACACATATT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   40  1.00

ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33


Consensus pattern (42 bp):   
GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTTT

Found at i:791 original size:10 final size:10

Alignment explanation


    Indices: 776--801  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        766 TCAAAGTTTA

                      
        776 AAAAAAAGAG
          1 AAAAAAAGAG

                      
        786 AAAAAAAGAG
          1 AAAAAAAGAG

                  
        796 AAAAAA
          1 AAAAAA

        802 TATATATAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (10 bp):   
AAAAAAAGAG
Done.