Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2125

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1088
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40


Found at i:363 original size:28 final size:28

Alignment explanation


    Indices: 320--376  Score: 96
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        310 CCTTTCTCTG

                       *                
        320 GTTAGCACTTACTGATCTGTTAGTATTT
          1 GTTAGCACTTAATGATCTGTTAGTATTT

                                 *      
        348 GTTAGCACTTAATGATCTGTTTGTATTT
          1 GTTAGCACTTAATGATCTGTTAGTATTT

             
        376 G
          1 G

        377 ATGCTAGAGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.21, C:0.12, G:0.19, T:0.47


Consensus pattern (28 bp):   
GTTAGCACTTAATGATCTGTTAGTATTT
Done.