Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1882

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28


Found at i:864 original size:48 final size:48

Alignment explanation


    Indices: 822--919  Score: 142
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        812 AAAAAGGTGG

                         *           *  *      *            
        822 GACCAAGGTGAAAGCCTACAAAGGGTGCTTTGAGTCAAAAAAAAAAGA
          1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAAAGA

                 *                                       *  
        870 GACCAGGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAAGGA
          1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAAAGA

              
        918 GA
          1 GA

        920 GGCTATGGTG


Statistics
Matches: 44,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  48   44  1.00

ACGTcount: A:0.46, C:0.15, G:0.27, T:0.12


Consensus pattern (48 bp):   
GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAAAGA

Done.