Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2339

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 589

Length: 982
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27


Found at i:963 original size:20 final size:19

Alignment explanation


    Indices: 925--963  Score: 51
    Period size: 20  Copynumber: 2.0  Consensus size: 19

        915 TGAAGACACG

                       *       
        925 GCCCAATAAGATGTACAAA
          1 GCCCAATAAGAAGTACAAA

                           *    
        944 GCCCAATCAAGAAGTTCAAA
          1 GCCCAAT-AAGAAGTACAAA

        964 CTAAACTTAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  19    7  0.41
  20   10  0.59

ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15


Consensus pattern (19 bp):   
GCCCAATAAGAAGTACAAA
Done.