Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4044

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 359

Length: 599
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30


Found at i:132 original size:13 final size:13

Alignment explanation


    Indices: 114--165  Score: 86
    Period size: 14  Copynumber: 3.8  Consensus size: 13

        104 TATCAAGTTG

                         
        114 TGAAAAAAAAATT
          1 TGAAAAAAAAATT

                          
        127 TGAAAAAAAAATTT
          1 TGAAAAAAAAA-TT

                         
        141 TGAAAAAAAAATT
          1 TGAAAAAAAAATT

                        
        154 GTGAAAAAAAAA
          1 -TGAAAAAAAAA

        166 GAGATCTAGT


Statistics
Matches: 37,  Mismatches: 0, Indels: 3
        0.93            0.00        0.08

Matches are distributed among these distances:
  13   13  0.35
  14   24  0.65

ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21


Consensus pattern (13 bp):   
TGAAAAAAAAATT

Done.