Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold764
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82843
ACGTcount: A:0.04, C:0.02, G:0.03, T:0.03
Warning! 72781 characters in sequence are not A, C, G, or T
Found at i:284 original size:132 final size:132
Alignment explanation
Indices: 43--2270 Score: 2786
Period size: 132 Copynumber: 16.9 Consensus size: 132
33 AGACATCTAC
* * ** * *
43 AGTAGGTTGAAGATTGTAGATTCTGTCACCCTAAACAGTCTTGGAGCAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* *
108 CTTATCTTCCCAATACACTGCAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCCA-TAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG-CAGTAG
172 TGG
130 TGG
* * ** * * * *
175 AGTTGGTTGAAGATTACAGATTCTGTCA-CCTCAAATAGTAGTGAAGCAGATCGAATATGATGAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGTGAA
* *
239 TCTTATGTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAG
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAG
304 TGG
130 TGG
* * * *
307 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTCAGCACTAGTGCAGCGGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * * * *
372 CATATCTTCTCAAGATAGTGAAGAAGCAAATGTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGT
437 GG
131 GG
* * * * *
439 AGTAGCTTGAAGATTGTAGATTTTCTCACCCTAAGCATTAGTGGA-CTAGATCGAAGATGGTGAA
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGC-AGATCGAAGATGGTGAA
* * *
503 TCTTATATTCCCAATACAGTGGAGAAGAAGATTTAAGCCATTAGACCTATCTCCCTAAGCAGTAG
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAG
568 TGG
130 TGG
* * * * * * *
571 AGTAGGTTGAAGATTACAGATTCTGTCACGCTAAACAGTAGGGGAGCAGATCAAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
636 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTACT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGT
*
701 AG
131 GG
*
703 AGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * *
768 CTTATCTGCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGT
833 GG
131 GG
* * * * * *
835 AGAAGGTTAAAGATTACAGATTCTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* *
900 CTTACCTTCCTAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCCA-TAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG-CAGTAG
964 TGG
130 TGG
* * * * * *
967 AGTTGGATGAAGATTGCAGATTCTGTCACCCTAAACAGTTGTGAAGCAGATCGAATATGAG-GAA
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG-GTGAA
* * * * * *
1031 TCTTATGTTCCCAATACAGTGGAGAAGAACATTTAAGTCATTAGTCCTATCACCCTAAGTAGTAG
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAG
1096 TGG
130 TGG
* * * * *
1099 AGTAGGCTGAAGATTGAAGATTCTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
1164 CTTATCTTCACAATACAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCAAAGCCA-TAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG-CAGTAG
1228 TGG
130 TGG
* * * * * *
1231 AGTTGGTTGGAGATTGCAGATTCTGTCACCCTAAACAGTTGTGAAGCAGATCGAATATGAG-GAA
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG-GTGAA
* *
1295 TCTTATGTT-CC----CA-TGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCTCTAAGCCA-TA
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG-CAGTA
*
1353 GTAG
129 GTGG
* * * * * *
1357 AGTTGGTTGGAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATGATGGAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * *
1422 CTTATCTTCCCAAAACAATGGAGAAGCATATTAAAGTCATTAGTCCTATCACCCT-AGTCAGTAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG-CAGTAG
1486 TGG
130 TGG
* * * *
1489 AGTAGGTTGAAGATTGAAGATTATGTCACCCTAAGCAGTAGTAGAGCAGATAGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
1554 ATTATCTTCCCAATACAGTGAAGAATCAGATTTAAGCAATTAGTCCTATCACCCTAAGCAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGT
1619 GG
131 GG
* *
1621 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGGAGTAGTGGAGCAGATCGAATATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
1686 CTTATCTTCCCAATATAGAGGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGGAGTAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATC-TCCCTAAGCAGTAG
1750 TGG
130 TGG
* * * *
1753 AGTCGGTTGAAGATTGCAGATTTTGTCACCCTAACCAGTAGT-GATGCAGAGCGAAGATGGTGAA
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAA
* * * * *
1817 TCTTATCATCCCAATATAATAGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAG
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAG
1882 TGG
130 TGG
* * *
1885 AGTA-GTTGAAGATTGCAGATTTTGTCACCCTAACCAGTAGT-GATGCAGAGCGAAGATGGTGAA
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAA
* * * * *
1948 TCTTATCATCCCAATATAATAGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAG
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAG
2013 TGG
130 TGG
** * ** * *
2016 AGTAGGTTGAAGATTGCAGATTAAGTCACCCTAAGCAGTAGTGCAGTGGAACAAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* ** * ** * * * *
2081 CATATCTTTTCAAGATTGTGGAGAAGCAAATGTAAGCCATTAGTCCAATCTCCCTATGCAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGT
2146 GG
131 GG
* *
2148 AGTA-GTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
2212 CTTATCATCCCAATATAATAGAGAAGCAGATTTAAGCCATTAGACCTATCTCCCTAAGC
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGC
2271 NNNNNNNNNN
Statistics
Matches: 1823, Mismatches: 248, Indels: 51
0.86 0.12 0.02
Matches are distributed among these distances:
126 112 0.06
127 4 0.00
131 248 0.14
132 1447 0.79
133 12 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGT
GG
Found at i:759 original size:44 final size:44
Alignment explanation
Indices: 549--892 Score: 123
Period size: 44 Copynumber: 7.8 Consensus size: 44
539 GCCATTAGAC
* * *
549 CTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTACAGATT
* * * * ** * * * *
593 CTGTCACGCTAAACAGTAGGGGAGCAGATCAAATATGA-TGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTACAGATT
* * * * * * *
636 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTACAGATT
* * * * *
681 CTATCACCCTAAGTAGTACTAGAGTAGGTTGAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTACAGATT
* * *** *
725 CTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTACAGATT
* * * * * *
768 CTTATCTGCCC-AATACAGTAGAGAAGCAGATTTAAGCCATT--A-ATC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTACAGATT
* * *
813 CTATCACCCTAAGCAGTAGTGGAGAAGGTTAAAGATTACAGATT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTACAGATT
* * * * *
857 CTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGAT
1 CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
893 GGTGAATCTT
Statistics
Matches: 207, Mismatches: 74, Indels: 38
0.65 0.23 0.12
Matches are distributed among these distances:
41 6 0.03
43 46 0.22
44 109 0.53
45 41 0.20
46 1 0.00
47 3 0.01
48 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTACAGATT
Found at i:36924 original size:132 final size:131
Alignment explanation
Indices: 36681--37009 Score: 367
Period size: 132 Copynumber: 2.5 Consensus size: 131
36671 NNNNNNAAGT
* * *
36681 AGTAGTGGAGCAGATCGAAGATTGTGAATCTTAT-CTTTCCAATATAGTGGAGAAGCAGATTTTA
1 AGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCCTCT-CAA-ATAGTGGAGAAGCAGATTTAA
* * * * * **
36745 GCCATTAGTCCTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTGCAGATTCTGTTACCCTA
64 GCAATTAGTCCAATCACCCTAAGCAACAGTGGAGTAGGTTGAAGATTGCAGATTCTATCACCAAA
36810 AGC
129 AGC
* * *
36813 AGTTGTGGAGCGGATCGAAGATGGTGAATCTTATCCTCTCAAGATAGTGGAGAAGCAGATTTAAG
1 AGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCCTCTCAA-ATAGTGGAGAAGCAGATTTAAG
* ** * *
36878 CAATTTGTCCAAT-ATCCCTAAGCTGCAGTGGAGTAGGTTTAGGATTGCAGATTCTATCACCAAA
65 CAATTAGTCCAATCA-CCCTAAGCAACAGTGGAGTAGGTTGAAGATTGCAGATTCTATCACCAAA
36942 AGC
129 AGC
* * ** * *
36945 AGTAGTGGAGTAGCTTAAAGATCGTGAATCTTATCTTC-CAAATACTGTGGAGAAGTAGATTTAA
1 AGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCCTCTCAAATA--GTGGAGAAGCAGATTTAA
37009 G
64 G
37010 ATTACAGATT
Statistics
Matches: 166, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
130 3 0.02
131 4 0.02
132 156 0.94
133 3 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (131 bp):
AGTAGTGGAGCAGATCGAAGATCGTGAATCTTATCCTCTCAAATAGTGGAGAAGCAGATTTAAGC
AATTAGTCCAATCACCCTAAGCAACAGTGGAGTAGGTTGAAGATTGCAGATTCTATCACCAAAAG
C
Found at i:37037 original size:89 final size:89
Alignment explanation
Indices: 36909--37094 Score: 196
Period size: 89 Copynumber: 2.1 Consensus size: 89
36899 GCTGCAGTGG
* * * * * *
36909 AGTAGGTTTAGGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGCTTAAAGATCG-TGAA
1 AGTAGATTTAAGATTACAGATTCTATCACCAAAAGCAGTAGTGGAGCAGATCAAAGAT-GATGAA
*
36973 TCTTATCTTCCAAATACTGTGGAGA
65 TCTTATCTTCCAAATACAGTGGAGA
* * * * * **
36998 AGTAGATTTAAGATTACAGATTTTGTCACCCTAAA-CAGTAGTGGTGCAGATCGACTATGATGAA
1 AGTAGATTTAAGATTACAGATTCTATCA-CCAAAAGCAGTAGTGGAGCAGATCAAAGATGATGAA
*
37062 TCTTATCTTCCCAATACAGTGGAGA
65 TCTTATCTTCCAAATACAGTGGAGA
*
37087 AGCAGATT
1 AGTAGATT
37095 CAAGCCATTA
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
88 1 0.01
89 73 0.92
90 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (89 bp):
AGTAGATTTAAGATTACAGATTCTATCACCAAAAGCAGTAGTGGAGCAGATCAAAGATGATGAAT
CTTATCTTCCAAATACAGTGGAGA
Found at i:37195 original size:221 final size:221
Alignment explanation
Indices: 36777--37230 Score: 516
Period size: 221 Copynumber: 2.1 Consensus size: 221
36767 GCAATAGTGG
* * * * * * * *
36777 AGTAGGTTGAAGATTGCAGATTCTGTTACCCTAAGCAGTTGTGGAGCGGATCGAAGATGGTGAAT
1 AGTAGATTTAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
* * * * **
36842 CTTATCCTCTCAAGATAGTGGAGAAGCAGATTTAAGCAATTTGTCCAATATCCCTAAGCTGCAGT
66 CTTATCCTCCCAAGACAGTGGAGAAGCAGATTCAAGCAATTAGTCCAATATCCCTAAGAAGCAGT
* * * * * * * *
36907 GGAGTAGGTTTAGGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGCTTAAAGATCGTGA
131 GGAGTAAGTTGAAGATTGCAGATTCTATCACCAAAAGCAATAGTAGAGGAGATCAAAGATCGTGA
* *
36972 ATCTTATCTT-CCAAATACTGTGGAGA
196 ATCTGATCTTACC-AATACAGTGGAGA
* * **
36998 AGTAGATTTAAGATTACAGATTTTGTCACCCTAAACAGTAGTGGTGCAGATCGACTATGATGAAT
1 AGTAGATTTAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
* * * * *
37063 CTTATCTTCCCAATACAGTGGAGAAGCAGATTCAAGCCATTAGTCCTATCA-CCCTAAGAAGTAG
66 CTTATCCTCCCAAGACAGTGGAGAAGCAGATTCAAGCAATTAGTCCAAT-ATCCCTAAGAAGCAG
* * ** * *
37127 TGGAGTAAGTTGAAGATTGCAGATTCTGTCTCCCTAAGCAATAGTAGAGGAGATCGAAGATGGTG
130 TGGAGTAAGTTGAAGATTGCAGATTCTATCACCAAAAGCAATAGTAGAGGAGATCAAAGATCGTG
37192 AATCTGATCTTACCAATACAGTGGAGA
195 AATCTGATCTTACCAATACAGTGGAGA
*
37219 AGCAGATTTAAG
1 AGTAGATTTAAG
37231 CCATTAGTCC
Statistics
Matches: 191, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
221 188 0.98
222 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (221 bp):
AGTAGATTTAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAAGATGATGAAT
CTTATCCTCCCAAGACAGTGGAGAAGCAGATTCAAGCAATTAGTCCAATATCCCTAAGAAGCAGT
GGAGTAAGTTGAAGATTGCAGATTCTATCACCAAAAGCAATAGTAGAGGAGATCAAAGATCGTGA
ATCTGATCTTACCAATACAGTGGAGA
Found at i:37244 original size:132 final size:132
Alignment explanation
Indices: 37058--40275 Score: 5514
Period size: 132 Copynumber: 24.3 Consensus size: 132
37048 TCGACTATGA
* * * * * *
37058 TGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTCAAGCCATTAGTCCTATCACCCTAAGAA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
* * * * * * ** * * * *
37123 GTAGTGGAGTAAGTTGAAGATTGCAGATTCTGTCTCCCTAAGCA-ATAGTAGAGGAGATCGAAGA
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGA-AGTGGAGTAGCTCAAAGA
*
37187 TGG
130 TCG
* * * *
37190 TGAATCTGATCTTACC-AATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGA
1 TGAATCTTATCTT-CCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCT---A
* * * ** * *
37254 AGTAGTGGAGTAAGTTGAAGAAGGCTGAAGATTGCAGATT-TGTCACCCTAAGCAGTAGTGGAGC
62 AGCAGT-G-GT--G--G-AGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGT
* * *
37318 AGATCGAAGATGG
120 AGCTCAAAGATCG
* * * *
37331 TGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCC
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAG-C
** * * * * ** ** ** * *
37396 A-TGGTGGAGTTGGTTAAAGATTGCAGATTCTGTTACCCTAAGCAGTTGTGGAGCGGATCGAAGA
65 AGTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGA
*
37460 TGG
130 TCG
* * * *
37463 TGAATGTTATCTTCTCAAGATA--GTGGGGAAGCAGATTTAAGCCATTAGTCCAATCTCCCTAAG
1 TGAATCTTATCTTC-CAA-ATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAG
* * * * * ** * * * *
37526 CTGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCCGTAGTGGAGTA-CATCGAC
64 CAGTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGC-TCAAA
*
37590 GATGG
128 GATCG
*
37595 TGAATCTTATCTTCCAAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
37660 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
37725 CG
131 CG
37727 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
37792 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
37857 CG
131 CG
37859 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
37924 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
37989 CG
131 CG
37991 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38056 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38121 CG
131 CG
38123 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38188 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38253 CG
131 CG
38255 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38320 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38385 CG
131 CG
38387 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38452 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38517 CG
131 CG
38519 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38584 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38649 CG
131 CG
38651 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38716 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38781 CG
131 CG
38783 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38848 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
38913 CG
131 CG
38915 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
38980 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39045 CG
131 CG
39047 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39112 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39177 CG
131 CG
39179 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39244 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39309 CG
131 CG
39311 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39376 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39441 CG
131 CG
39443 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39508 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39573 CG
131 CG
39575 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39640 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39705 CG
131 CG
39707 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39772 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39837 CG
131 CG
39839 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
39904 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
39969 CG
131 CG
39971 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
40036 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
40101 CG
131 CG
* * * * * *
40103 TGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCAATATCCCTAAGCT
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
** * * * *
40168 GCAGTGGAGTAGGTTGAGGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGCTCAAAGAT
66 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
40233 CG
131 CG
40235 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAG
1 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAG
40276 ATTACAGATT
Statistics
Matches: 2995, Mismatches: 69, Indels: 44
0.96 0.02 0.01
Matches are distributed among these distances:
130 3 0.00
131 22 0.01
132 2837 0.95
133 5 0.00
134 3 0.00
135 6 0.00
136 2 0.00
137 3 0.00
138 4 0.00
139 2 0.00
140 2 0.00
141 87 0.03
142 19 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
CG
Found at i:40293 original size:89 final size:89
Alignment explanation
Indices: 40186--40364 Score: 200
Period size: 89 Copynumber: 2.0 Consensus size: 89
40176 GTAGGTTGAG
* * *
40186 GATTGCAGATTCTATCA-CCAAAAGCAGTAGTGGAGTAGCTCAAAGATCG-TGAATCTTATCTTC
1 GATTACAGATTCTATCACCCAAAA-CAGTAGTGGAGCAGATCAAAGAT-GATGAATCTTATCTTC
* **
40249 CAAATACTGTGGAGAAGTAGATTTAA
64 CAAATACAGTGGAGAAACAGATTTAA
* * * * * ** *
40275 GATTACAGATTTTGTCACCCTAAACAGTAGTGGTGCAGATCGACTATGATGAATCTTATCTTCCC
1 GATTACAGATTCTATCACCCAAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCA
40340 AATACAGTGGAGAAACAGATTTAA
66 AATACAGTGGAGAAACAGATTTAA
40364 G
1 G
40365 CCATTAGTAC
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
88 1 0.01
89 68 0.92
90 5 0.07
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (89 bp):
GATTACAGATTCTATCACCCAAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCA
AATACAGTGGAGAAACAGATTTAA
Found at i:40510 original size:132 final size:132
Alignment explanation
Indices: 40264--43621 Score: 4123
Period size: 132 Copynumber: 25.4 Consensus size: 132
40254 ACTGTGGAGA
* * * * * * ** *
40264 AGTAGATTTAAGATTACAGATTTTGTCACCCTAAACAGTAGTGGTGCAGATCGACTATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
40329 CTTATCTTCCCAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
40394 GG
131 GG
* * * * * ** *
40396 AGTAAGTTGAAGATTGCAAATTCTGTCTCCCTAAGCAATAGTAGAGGGGATCGAAGATGGTGAGT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * *
40461 CTTATCTTACCGATACAGTGGAGACGAAGATTTAAGCCATTAGTCCTATCATCCTAAGAAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
40526 GG
131 GG
* * * * * *
40528 AGTCGGCTAAAGATTGGAGATTCTATCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
40593 CTTATCTTACCGAGACAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAACAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
40658 GG
131 GG
* * * * * *
40660 AGTCGGTTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGAAGCAGATC-AGATATGATGAA
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGA-AGATGGTGAA
* *
40724 TCTTATTTTCCCAATACAGTGGAGAAGCAGATTTTAAGCCATTAGTCCTATCACCCTAAACAGTA
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGA-TTTAAGCCATTAGTCCTATCACCCTAAGCAGTA
40789 GTGG
129 GTGG
* * * *
40793 AGTCGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTAAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* *
40858 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGAAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
40923 GG
131 GG
* * * * *
40925 AGTCGGCTAAAGATTGCAGATTCTATCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
40990 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
41055 GG
131 GG
* * * * *
41057 AGTAGGTTGAATATTGTAGATTCTGTTACCCTAAGCAGTTGTGGAGCGGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * * * *
41122 CTTATCTTCTCAAGATAGTGGGGAAGCAGATTTAATCCATTAGTCCAATCTCCCTAAGCTGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
41187 GG
131 GG
* *
41189 AGTAGGATGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
41254 CTTATCTTCCAAATACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCC-AGAGCAGTAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTA-AGCAGTAG
41318 TGG
130 TGG
* * * * * *
41321 AGTAGGTTAAAGACTGCAGATTTTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
41386 CTTATCTTTCCAATACAGTGGAGAAGCAGATATAAGCCATTA-TCCCTAGCACCTTAAGAAGTAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGT-CCTATCACCCTAAGCAGTAG
41450 TGG
130 TGG
* *
41453 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGCAGCGGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * * *
41518 CATATCTTCTCAAGATAGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
41583 GG
131 GG
* * * * * * *
41585 AGTAGGTTTAGGATTACAGATTCTGTCACCCTAAGCAGTATTGGAGTAGATCGAAGATCGTGCAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * *
41650 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTACTCCCATGACCTTCAGCAGTAGG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
41715 GG
131 GG
* * * *
41717 AGTAGGCTGAAGATTGCAGATTCTGTCACCCTAAGTAGT-GTGGAGCAGATCAAAGATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * *
41781 CTTATCTTCCTAAAACAGTGCAGAAGCAGATTTAAGCCGTTAGTCCTATCTCCCTAAGCCAG-GG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAG-CAGTAG
41845 TGG
130 TGG
* * * * * * *
41848 -GCTTGGTTGAAGATTGCAGATTCTGTCACCTTAAACAGTAATGAAGCAGATCGAATATGATGAA
1 AG-TAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAA
* * *
41912 TCTTATTTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCTGTAG
65 TCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAG
41977 TGG
130 TGG
* * * *
41980 AGTCGGTTGAAGATTGCAGATTCTGTCCCCCTAAGCAGTAGTCGAGTAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
42045 CTTATCTTCCCAATCCAGTGGAGAAGTAGATTTAAGCCAATAGTCCTATCCCCCTTAGCCA-TAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAG-CAGTAG
42109 TGG
130 TGG
* * * * * * * *
42112 AGTTGGTTGAATATTGTAGATACTGTCACCCTAAACAGTAGTGAAGCAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
42177 CTTATTTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCTGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
42242 GG
131 GG
* * * *
42244 AGTCGGTTGAAGATTGCAGATTCTGTCCCCCTAAGCAGTAGTCGAGTAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * *
42309 CTTATCTTCCCAATACAGTGGAGAAGTAGATTTAAGCCAATAGTCCTATCCCCCTTAGCCA-TAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAG-CAGTAG
42373 TGG
130 TGG
* * * * * * *
42376 AGTTGGTTGAATATTGTAGATTCTGTCACCCTAAACAGTAGTGAAGCAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * *
42441 CCTATTTTCTCAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCTATCATCCTAAGCAGTGGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
*
42506 GA
131 GG
* * * *
42508 AGTAGGTTGAAGATTGCAGATTCTGTTACCCTAAGTAGTAGTGCAGCGGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * * * * * *
42573 CATATCTTCTCAAGATAGTGGAGAAGTAAATGTAAGCCATTAGTCCAATCTCCCTAAGCAGTACT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
42638 GG
131 GG
* *
42640 AGTAGGTTGAGGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* ** * ** * *
42705 CTTATCTACCCGTTACAGTAGAGAAGCAGATTTAAGCCATTAAACCTATC-TCCTAAAGCCGTAG
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT-AAGCAGTAG
42769 TGG
130 TGG
* * * * * * * * * *
42772 AGTAGGTTCAAGATTACAGATTTTGCCACCTTAAACAGTAGTTGAGTAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * * * * **
42837 CTTATCTTCCCAATCCAATGGAGAAGCAAATTTAAGTCAATAGTCTTATCTCCCTAAGCCCTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
42902 GG
131 GG
* ** * * * * *
42904 AGTTGGTTGAAGATTGCAGATTCTGTCACCCTAAATAGTAGTGAAACAAATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
42969 CTTATTTTACCAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCTATCATCCTAAGCAGTGGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
43034 GG
131 GG
** * *
43036 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAATAGATCGAAAATGGTGATT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * *
43101 CTTATCTTTCCAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCTATCATCCTAAGCAGTGGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
43166 GG
131 GG
* * * *
43168 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGTAGAAGTGGAGCAGATTGAAGATGGTTAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * * * *
43233 CTTATCTTCCTAATACAGAGGAGAAGCAGATTTAAGCCAATAGTCCAATCACCCTAAACAGTAGT
66 CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
43298 GG
131 GG
* * * * * * * *
43300 AGTAGGTTGACGATTACAGGTTCTGTCACCTTAAACAGTAGTGCAGCAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* *
43365 CTTATCTTCCCAATACAGTGGAGACA-CAGATTTAAGCCATTAGTCC-ATTCACCTTAGGCAGTA
66 CTTATCTTCCCAATACAGTGGAGA-AGCAGATTTAAGCCATTAGTCCTA-TCACCCTAAGCAGTA
*
43428 CTGG
129 GTGG
* * * * *
43432 AGTAGGTTGATGATTGAAGATTCTGTCACCCTAAGGAGTAGTGGAGCAGATCGAATATGATGAAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
* * *
43497 CTTGTCTTCCCAATACAGTGGAGACA-CAGATTTAAGCCATTAGTCC-ATTCACCTTAGGCAGTA
66 CTTATCTTCCCAATACAGTGGAGA-AGCAGATTTAAGCCATTAGTCCTA-TCACCCTAAGCAGTA
*
43560 CTGG
129 GTGG
* * *
43564 AGTAGGTTGATGATTGAAGATTCTGTCACCCTAAGGAGTAGTGGAGCAGATCGAAGAT
1 AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
43622 NNNNNNNNNN
Statistics
Matches: 2773, Mismatches: 433, Indels: 40
0.85 0.13 0.01
Matches are distributed among these distances:
130 1 0.00
131 114 0.04
132 2525 0.91
133 132 0.05
134 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (132 bp):
AGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAT
CTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGT
GG
Found at i:40617 original size:353 final size:353
Alignment explanation
Indices: 39971--40628 Score: 829
Period size: 353 Copynumber: 1.9 Consensus size: 353
39961 TCAAAGATCG
* ** * * *
39971 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
* * * * * *
40036 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTAGTGGAGCAAGCTGAAGATTGCAAATTCTATCACCAAAAGCAGAAGTAGAGGAGATCAAAGAT
*
40101 CGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCAATATCCCTAAG
131 CGTGAATCTTATCTTCCAAATACAGTGGAGAAGAAGATTTAAGCAATTAGTCCAATATCCCTAAG
** * * * * *
40166 CTGCAGTGGAGTAGGTTGAGGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGCTCAAAG
196 AAGCAGTGGAGTAGGCTAAAGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGCAGATCAAAG
* * *
40231 ATCGTGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGATTACAGATTTTGTCACCCT
261 ATCGTGAATCTTATCTTCCAAAGACAGTGGAGAAGAAGATTTAAGATTACAGATTTTGTCACCCT
40296 AAACAGTAGTGGTGCAGATCGACTATGA
326 AAACAGTAGTGGTGCAGATCGACTATGA
*
40324 TGAATCTTATCTTCCCAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
1 TGAATCTTATCTTCCAAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
* * * * ** * *
40389 GTAGTGGAGTAAGTTGAAGATTGCAAATTCTGTCTCCCTAAGCA-ATAGTAGAGGGGATCGAAGA
66 GTAGTGGAGCAAGCTGAAGATTGCAAATTCTATCACCAAAAGCAGA-AGTAGAGGAGATCAAAGA
* * * * * *
40453 TGGTGAGTCTTATCTTACC-GATACAGTGGAGACGAAGATTTAAGCCATTAGTCCTATCAT-CCT
130 TCGTGAATCTTATCTT-CCAAATACAGTGGAGAAGAAGATTTAAGCAATTAGTCCAAT-ATCCCT
* * * ** * *
40516 AAGAAGTAGTGGAGTCGGCTAAAGATTGGAGATTCTATCACCCTAAGTAGTAGTGGAGCAGATCG
193 AAGAAGCAGTGGAGTAGGCTAAAGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGCAGATCA
* *
40581 AAGATGGTGAATCTTATCTTACC-GAGACAGTGGAGAAGAAGATTTAAG
258 AAGATCGTGAATCTTATCTT-CCAAAGACAGTGGAGAAGAAGATTTAAG
40629 CCATTAGTCC
Statistics
Matches: 254, Mismatches: 47, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
352 1 0.00
353 247 0.97
354 6 0.02
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (353 bp):
TGAATCTTATCTTCCAAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
GTAGTGGAGCAAGCTGAAGATTGCAAATTCTATCACCAAAAGCAGAAGTAGAGGAGATCAAAGAT
CGTGAATCTTATCTTCCAAATACAGTGGAGAAGAAGATTTAAGCAATTAGTCCAATATCCCTAAG
AAGCAGTGGAGTAGGCTAAAGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGCAGATCAAAG
ATCGTGAATCTTATCTTCCAAAGACAGTGGAGAAGAAGATTTAAGATTACAGATTTTGTCACCCT
AAACAGTAGTGGTGCAGATCGACTATGA
Found at i:40748 original size:485 final size:485
Alignment explanation
Indices: 39839--40757 Score: 1161
Period size: 485 Copynumber: 1.9 Consensus size: 485
39829 TCAAAGATCG
* ** * * *
39839 TGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCA
1 TGAATCTTATCTTCCAAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
* * * * * *
39904 GTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAGAT
66 GTAGTGGAGCAAGCTGAAGATTGCAAATTCTATCACCAAAAGCAGAAGTAGAGGAGATCAAAGAT
* *
39969 CGTGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAG
131 CGTGAATCTTATCTTCCAAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAG
* * * * *
40034 CAGTGGTGGAGCAGGCTGAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGTAGCTCAAAG
196 AAGTAGTGGAGCAGGCTAAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGCAGATCAAAG
* *
40099 ATCGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCAATTAGTCCAATATCCCTA
261 ATCGTGAATCTTATCTTCCAAAGACAGTGGAGAAGAAGATTTAAGCAATTAGTCCAATATCCCTA
* * * * * * *
40164 AGCTGCAGTGGAGTAGGTTGAGGATTGCAGATTCTATCACCAAAAGCAGTAGTGGAGTAGCTCAA
326 AACAGCAGTGGAGTAGGTTGAAGATTACAGATTCTATCACCAAAAGCAGTAGTGAAGCAGATCAA
* *
40229 AGATCGTGAATCTTATCTTCCAAATACTGTGGAGAAGTAGATTTAAGATTACAGATTTTGTCACC
391 AGATCGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGATTACAGATTTTGTCACC
40294 CTAAACAGTAGTGGTGCAGATCGACTATGA
456 CTAAACAGTAGTGGTGCAGATCGACTATGA
*
40324 TGAATCTTATCTTCCCAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
1 TGAATCTTATCTTCCAAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
* * * * ** * *
40389 GTAGTGGAGTAAGTTGAAGATTGCAAATTCTGTCTCCCTAAGCA-ATAGTAGAGGGGATCGAAGA
66 GTAGTGGAGCAAGCTGAAGATTGCAAATTCTATCACCAAAAGCAGA-AGTAGAGGAGATCAAAGA
* * * *
40453 TGGTGAGTCTTATCTTACC-GATACAGTGGAGACGAAGATTTAAGCCATTAGTCCTATCAT-CCT
130 TCGTGAATCTTATCTT-CCAAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATC-TCCCT
* ** * *
40516 AAGAAGTAGTGGAGTC-GGCTAAAGATTGGAGATTCTATCACCCTAAGTAGTAGTGGAGCAGATC
193 AAGAAGTAGTGGAG-CAGGCTAAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGCAGATC
* * * * *
40580 GAAGATGGTGAATCTTATCTTACC-GAGACAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCA
257 AAAGATCGTGAATCTTATCTT-CCAAAGACAGTGGAGAAGAAGATTTAAGCAATTAGTCCAAT-A
* * * *
40644 -CCCTAAACAGTAGTGGAGTCGGTTGAAGATTACAGATTCTGTCACCCTAAA-CAGTAGTGAAGC
320 TCCCTAAACAGCAGTGGAGTAGGTTGAAGATTACAGATTCTATCA-CCAAAAGCAGTAGTGAAGC
* * * *
40707 AGATCAGATAT-GATGAATCTTATTTTCCCAATACAGTGGAGAAGCAGATTT
384 AGATCAAAGATCG-TGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTT
40758 TAAGCCATTA
Statistics
Matches: 365, Mismatches: 61, Indels: 16
0.83 0.14 0.04
Matches are distributed among these distances:
484 2 0.01
485 351 0.96
486 12 0.03
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (485 bp):
TGAATCTTATCTTCCAAATACAGTGGAGAAACAGATTTAAGCCATTAGTACTATCACCCTAAGAA
GTAGTGGAGCAAGCTGAAGATTGCAAATTCTATCACCAAAAGCAGAAGTAGAGGAGATCAAAGAT
CGTGAATCTTATCTTCCAAATACAGTGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAG
AAGTAGTGGAGCAGGCTAAAGATTGCAGATTCTATCACCAAAAGCAGAAGTGGAGCAGATCAAAG
ATCGTGAATCTTATCTTCCAAAGACAGTGGAGAAGAAGATTTAAGCAATTAGTCCAATATCCCTA
AACAGCAGTGGAGTAGGTTGAAGATTACAGATTCTATCACCAAAAGCAGTAGTGAAGCAGATCAA
AGATCGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGATTACAGATTTTGTCACC
CTAAACAGTAGTGGTGCAGATCGACTATGA
Found at i:43070 original size:44 final size:44
Alignment explanation
Indices: 43014--43225 Score: 128
Period size: 44 Copynumber: 4.8 Consensus size: 44
43004 GCAATTAGTC
* *
43014 CTATCATCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTGGTGGAGTAGATTGAAGATTGCAGATT
* * * * * **
43058 CTGTCACCCTAAGCAGTAGTGGAATAGATCGAA-AATGGTGATT
1 CTATCACCCTAAGCAGTGGTGGAGTAGATTGAAGATTGCAGATT
** * * * * * *
43101 CTTATCTTTCC-AATACAGTGGAGAAGCAGATTTAAGCAATT--AG-TC
1 C-TATC-ACCCTAA-GCAGTGGTGGAGTAGATTGAAG--ATTGCAGATT
* *
43146 CTATCATCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTGGTGGAGTAGATTGAAGATTGCAGATT
* * ** *
43190 CTGTCACCCTAAGTAGAAGTGGAGCAGATTGAAGAT
1 CTATCACCCTAAGCAGTGGTGGAGTAGATTGAAGAT
43226 GGTTAATCTT
Statistics
Matches: 120, Mismatches: 38, Indels: 20
0.67 0.21 0.11
Matches are distributed among these distances:
41 3 0.03
43 29 0.24
44 68 0.57
45 17 0.14
46 1 0.01
48 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTGGTGGAGTAGATTGAAGATTGCAGATT
Found at i:82241 original size:132 final size:132
Alignment explanation
Indices: 81997--82841 Score: 1099
Period size: 132 Copynumber: 6.5 Consensus size: 132
81987 NNNNNNNNNN
* * * * *
81997 TTAAGCCATTAGTCCTATCACCGTAAGAAGTAGTGGAGTCGATTCAAGATTGCAGATTCTGTCAC
1 TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
* * * *
82062 CGTAAGTAGTAGTGGAGCAGATCGAAGATGGTTAATCTTATCTTCCTAATACAGAGGAGAAGCAG
66 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGCAG
82127 AT
131 AT
* * *
82129 TTAAGCCATTAGTCCTATCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCAC
1 TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
* * * * * *
82194 CCTAAGTAGAAGTGGAGCAGATCGAAGATGGTTAATCTTAACATCCTAATACAGAGGAGAAGCAG
66 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGCAG
82259 AT
131 AT
* *
82261 TTAAGCCATTAGTCC-ATTCACGTTAAGCAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
1 TTAAGCCATTAGTCCTA-TCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * *
82325 CCCTAA-CGAGTAGTGGAGCAGATCGAATATGATGAATCTTCTCTTCCCAATACAGAGGAGAAGC
65 CCCTAAGC-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGC
82389 AGAT
129 AGAT
* * *
82393 TTAAGCCATTAGTCC-ATTCACGTTAAGCAGTACTGGAGTAGGTTGAAGCTTGCAGATTCTGTCA
1 TTAAGCCATTAGTCCTA-TCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * * * *
82457 CCCTAAACAGCAGT-GA--AG--C--AGAT--TGAATCTTATCTTCCCAATATAGTGGAGAAACA
65 CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGCA
82513 GAT
130 GAT
* * * *
82516 TTAAGCCATTAGTCC-ATTCACCTTAAGCAGTACTGGAGTAGCTTGAAGCTTGGAGATTCTGTCA
1 TTAAGCCATTAGTCCTA-TCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * * **
82580 CCCTAAGGAGTAGT-AATGCTGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAAGC
65 CCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGC
82644 AGAT
129 AGAT
82648 TTAAGCCATTAGTCCTATCATCC-TAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
1 TTAAGCCATTAGTCCTATCA-CCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
* * * *
82712 CCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAACA
65 CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGCA
*
82777 GGT
130 GAT
* **
82780 TTAAGTCATTAGTCCTATCACAATAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
1 TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
82842 GA
Statistics
Matches: 640, Mismatches: 57, Indels: 32
0.88 0.08 0.04
Matches are distributed among these distances:
123 105 0.16
125 3 0.00
126 1 0.00
127 1 0.00
128 1 0.00
129 2 0.00
130 4 0.01
131 4 0.01
132 514 0.80
133 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGAGGAGAAGCAG
AT
Found at i:82809 original size:387 final size:387
Alignment explanation
Indices: 82095--82841 Score: 1074
Period size: 387 Copynumber: 1.9 Consensus size: 387
82085 GAAGATGGTT
* *
82095 AATCTTATCTTCCTAATACAGAGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAACAGT
1 AATCTTATCTTCCCAATACAGAGGAGAAACAGATTTAAGCCATTAGTCCTATCACCCTAAACAGT
* * * *
82160 AGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGTAGAAGTGGAGCAGATCGAAGATGG
66 ACTGGAGTAGCTTGAAGATTACAGATTCTGTCACCCTAAGGAGAAGTGAAGCAGATCGAAGATGG
* * * *
82225 TTAATCTTAACATCCTAATACAGAGGAGAAGCAGATTTAAGCCATTAGTCCATTCACGTTAAGCA
131 TGAATCTTAACATCCCAATACACAGGAGAAGCAGATTTAAGCCATTAGTCCATTCACGCTAAGCA
*
82290 GTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACGAGTAGTGGAGCAGATCGAATAT
196 GTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACGAGTAGTGGAGCAGATCGAAGAT
* * **
82355 GATGAATCTTCTCTTCCCAATACAGAGGAGAAGCAGATTTAAGCCATTAGTCCATTCACGTTAAG
261 GATGAATCTTATCTTCCCAATACAGAGGAGAAACAGATTTAAGCCATTAGTCCATTCACAATAAG
*
82420 CAGTACTGGAGTAGGTTGAAGCTTGCAGATTCTGTCACCCTAAACAGCAGTGAAGCAGATTG
326 CAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGCAGTGAAGCAGATTG
* * * *
82482 AATCTTATCTTCCCAATATAGTGGAGAAACAGATTTAAGCCATTAGTCC-ATTCACCTTAAGCAG
1 AATCTTATCTTCCCAATACAGAGGAGAAACAGATTTAAGCCATTAGTCCTA-TCACCCTAAACAG
* ** * *
82546 TACTGGAGTAGCTTGAAGCTTGGAGATTCTGTCACCCTAAGGAGTAGT-AATGCTGATCGAAGAT
65 TACTGGAGTAGCTTGAAGATTACAGATTCTGTCACCCTAAGGAGAAGTGAA-GCAGATCGAAGAT
* * *
82610 GGTGAATCTTATCTTCCCAATACACTGGAGAAGCAGATTTAAGCCATTAGTCC-TATCATC-CTA
129 GGTGAATCTTAACATCCCAATACACAGGAGAAGCAGATTTAAGCCATTAGTCCAT-TCA-CGCTA
* *
82673 AGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCTTAA-GCAGTAGTGGAGCAGATCG
192 AGCAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACG-AGTAGTGGAGCAGATCG
* * * * *
82737 AAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAACAGGTTTAAGTCATTAGTCC-TATCAC
256 AAGATGATGAATCTTATCTTCCCAATACAGAGGAGAAACAGATTTAAGCCATTAGTCCAT-TCAC
*
82801 AATAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGT
320 AATAAGCAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGT
82842 GA
Statistics
Matches: 318, Mismatches: 36, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
386 5 0.02
387 312 0.98
388 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (387 bp):
AATCTTATCTTCCCAATACAGAGGAGAAACAGATTTAAGCCATTAGTCCTATCACCCTAAACAGT
ACTGGAGTAGCTTGAAGATTACAGATTCTGTCACCCTAAGGAGAAGTGAAGCAGATCGAAGATGG
TGAATCTTAACATCCCAATACACAGGAGAAGCAGATTTAAGCCATTAGTCCATTCACGCTAAGCA
GTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAACGAGTAGTGGAGCAGATCGAAGAT
GATGAATCTTATCTTCCCAATACAGAGGAGAAACAGATTTAAGCCATTAGTCCATTCACAATAAG
CAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGCAGTGAAGCAGATTG
Done.