Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3298

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 462

Length: 770
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:463 original size:28 final size:28

Alignment explanation


    Indices: 423--476  Score: 90
    Period size: 28  Copynumber: 1.9  Consensus size: 28

        413 AATATTTAAT

                 *                      
        423 TAATACGAAGAAGATAGATTAATTGAAA
          1 TAATAAGAAGAAGATAGATTAATTGAAA

                    *                 
        451 TAATAAGATGAAGATAGATTAATTGA
          1 TAATAAGAAGAAGATAGATTAATTGA

        477 TGCGTGTTTC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   24  1.00

ACGTcount: A:0.52, C:0.02, G:0.19, T:0.28


Consensus pattern (28 bp):   
TAATAAGAAGAAGATAGATTAATTGAAA
Done.