Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold870

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4883
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34


Found at i:763 original size:16 final size:16

Alignment explanation


    Indices: 742--772  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        732 TCAATCAGCG

                            
        742 ATATATATATACATAC
          1 ATATATATATACATAC

                  *        
        758 ATATATGTATACATA
          1 ATATATATATACATA

        773 TATAATGTTG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39


Consensus pattern (16 bp):   
ATATATATATACATAC
Done.