Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold891

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4624
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34


Found at i:2823 original size:3 final size:3

Alignment explanation


    Indices: 2815--2877  Score: 90
    Period size: 3  Copynumber: 20.7  Consensus size: 3

       2805 TATTTTAGTG

                                              *                     *   *  
       2815 TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA CTA CTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                               
       2863 TTA TTAA TTA TTA TT
          1 TTA TT-A TTA TTA TT

       2878 GGCTTTATTT


Statistics
Matches: 55,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
   3   52  0.95
   4    3  0.05

ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63


Consensus pattern (3 bp):   
TTA

Done.