Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold476
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 220969
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.31
Warning! 14744 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:12911 original size:76 final size:76
Alignment explanation
Indices: 12731--13031 Score: 563
Period size: 76 Copynumber: 4.0 Consensus size: 76
12721 ACCCGGGTGT
* *
12731 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGTTAATTTAGAATTAAATT--A-AAAAAATG
1 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
12793 AGTTTTTAACC
66 AGTTTTTAACC
12804 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
1 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
12869 AGTTTTTAACC
66 AGTTTTTAACC
12880 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
1 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
12945 AGTTTTTAACC
66 AGTTTTTAACC
12956 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
1 ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
13021 AGTTTTTAACC
66 AGTTTTTAACC
13032 CACACGGCCT
Statistics
Matches: 223, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
73 51 0.23
75 1 0.00
76 171 0.77
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (76 bp):
ATAAATTTTGCTAATTCTTTTAGTTTTACTGCATGCTAATTTAAAATTAAATTAAATAAAAAATG
AGTTTTTAACC
Found at i:13139 original size:64 final size:64
Alignment explanation
Indices: 13035--13177 Score: 182
Period size: 64 Copynumber: 2.2 Consensus size: 64
13025 TTTAACCCAC
* * * * *
13035 ACGGCCTGAACACATGGGGATGTCTCAGGCCGTGCGCAAAAT-AGGATATTCGACAGTGAGTCAT
1 ACGGCCTGGACACACGGGGATGTCCCAGGCCGTGCACAAAATGA-GATATTCGACAGTGAGCCAT
* *
13099 ACGGCCTGGACACACGGGTG-TGTCCCAGGTCGTGTACAAAATGAGATATTCGACAGTGAGCCAT
1 ACGGCCTGGACACACGGG-GATGTCCCAGGCCGTGCACAAAATGAGATATTCGACAGTGAGCCAT
*
13163 ACAGCCTGGACACAC
1 ACGGCCTGGACACAC
13178 AGGCATATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
64 67 0.97
65 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.29, T:0.19
Consensus pattern (64 bp):
ACGGCCTGGACACACGGGGATGTCCCAGGCCGTGCACAAAATGAGATATTCGACAGTGAGCCAT
Found at i:13199 original size:64 final size:64
Alignment explanation
Indices: 13071--13200 Score: 163
Period size: 64 Copynumber: 2.0 Consensus size: 64
13061 AGGCCGTGCG
* * * ** * * *
13071 CAAAATAGGATATTCGACAGTGAGTCATACGGCCTGGACACACGGGTGTGTCCCAGGTCGTGTA
1 CAAAATAGGATATTCGACAGTGAGCCATACAGCCTGGACACACAGGCATATCCCAGGCCATGTA
*
13135 CAAAAT-GAGATATTCGACAGTGAGCCATACAGCCTGGACACACAGGCATATCCTAGGCCATGTA
1 CAAAATAG-GATATTCGACAGTGAGCCATACAGCCTGGACACACAGGCATATCCCAGGCCATGTA
13199 CA
1 CA
13201 TAAGAGAGTG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 1 0.02
64 55 0.98
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (64 bp):
CAAAATAGGATATTCGACAGTGAGCCATACAGCCTGGACACACAGGCATATCCCAGGCCATGTA
Found at i:15886 original size:20 final size:18
Alignment explanation
Indices: 15850--15892 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
15840 AAGATCACTG
*
15850 ATTTTATTTTTATTTTTT
1 ATTTTATTTTTAATTTTT
15868 ATTTTAGTTGTTTAATTTTT
1 ATTTTA-TT-TTTAATTTTT
15888 ATTTT
1 ATTTT
15893 TTAAACTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 14 0.64
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (18 bp):
ATTTTATTTTTAATTTTT
Found at i:27875 original size:21 final size:21
Alignment explanation
Indices: 27839--27882 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
27829 AAATTTATTA
*
27839 AAATTTATTAGGGACGATTCTT
1 AAATTTATTAGAGACGATT-TT
27861 AAATTT-TTAGAGACGATTTT
1 AAATTTATTAGAGACGATTTT
27881 AA
1 AA
27883 TCGTTCCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 11 0.52
22 6 0.29
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (21 bp):
AAATTTATTAGAGACGATTTT
Found at i:29103 original size:28 final size:28
Alignment explanation
Indices: 29058--29112 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
29048 AATTCTACAA
29058 ATTTTTTTAAAAAATTTTAAAATTTAAT
1 ATTTTTTTAAAAAATTTTAAAATTTAAT
* *
29086 ATTTTTTTAATAATTTTTAAAATTTAA
1 ATTTTTTTAAAAAATTTTAAAATTTAA
29113 AAGGGCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
ATTTTTTTAAAAAATTTTAAAATTTAAT
Found at i:31218 original size:56 final size:56
Alignment explanation
Indices: 31126--31282 Score: 233
Period size: 56 Copynumber: 2.8 Consensus size: 56
31116 AATTTTTTGT
* * *
31126 TAGGATATTATTATGCGATATTGTTTTTTAGCAATTTGATTCTTAATAGAATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTAATAGAATATTA
* * * * *
31182 TAGGATATTATTATGGGATATTATCTCTTAGTAATTTGATTCCTAATGGGATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTAATAGAATATTA
*
31238 TAAGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTA
31283 CGTAACTACT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 89 1.00
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.47
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCTTAATAGAATATTA
Found at i:35322 original size:25 final size:25
Alignment explanation
Indices: 35295--35374 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
35285 TATATTCTTT
*
35295 ATATTTTAAATTACATATTATATAT
1 ATATTTTAAATTACATATTATATAC
*
35320 ATATTTTATAATTCACATA-TACATAC
1 ATATTTTA-AATT-ACATATTATATAC
* *
35346 ATATTTTTAATT-TATATCTATATAC
1 ATATTTTAAATTACATAT-TATATAC
35371 ATAT
1 ATAT
35375 ATATCTCTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
23 3 0.07
25 22 0.48
26 16 0.35
27 5 0.11
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (25 bp):
ATATTTTAAATTACATATTATATAC
Found at i:35353 original size:27 final size:25
Alignment explanation
Indices: 35294--35355 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 25
35284 ATATATTCTT
* *
35294 TATATTTTAAATTACATATTATATA
1 TATATTTTAAATTACATATCATACA
35319 TATATTTTATAATTCACATATACATACA
1 TATATTTTA-AATT-ACATAT-CATACA
35347 TAT-TTTTAA
1 TATATTTTAA
35356 TTTATATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 9 0.28
26 5 0.16
27 11 0.34
28 7 0.22
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (25 bp):
TATATTTTAAATTACATATCATACA
Found at i:35867 original size:69 final size:69
Alignment explanation
Indices: 35736--35867 Score: 201
Period size: 69 Copynumber: 1.9 Consensus size: 69
35726 AAATTCAAGA
* ** *
35736 TTTAAACAATCTCGGGAATTAAGAAGAGATCGTGTCTTAACTTACTGGGCATGATATTTTTTTCG
1 TTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCAAACTTACTGGGCATGATATCTTTTTCG
35801 AAGT
66 AAGT
* * *
35805 TTTAAACGATCTCGGGAATTAGGAAAAGATCGTGTCCAAACTTACTGGGCATGATCTCTTTTT
1 TTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCAAACTTACTGGGCATGATATCTTTTT
35868 AAAAAAAACT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (69 bp):
TTTAAACAATCTCGGGAATTAAGAAAAGATCGTGTCCAAACTTACTGGGCATGATATCTTTTTCG
AAGT
Found at i:36496 original size:6 final size:6
Alignment explanation
Indices: 36474--36514 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
36464 ACAATCTCTT
* *
36474 ATTTTA TTTTTT A-TTTA ATTTTA ATTTTA ATTTTA ATTTTA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
36515 TGTTAAAGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
ATTTTA
Found at i:36508 original size:18 final size:17
Alignment explanation
Indices: 36474--36514 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
36464 ACAATCTCTT
* *
36474 ATTTTATTTTTTATTTA
1 ATTTTAATTTTAATTTA
36491 ATTTTAATTTTAATTTTA
1 ATTTTAATTTTAA-TTTA
36509 ATTTTA
1 ATTTTA
36515 TGTTAAAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTTAATTTTAATTTA
Found at i:38377 original size:3 final size:3
Alignment explanation
Indices: 38369--38418 Score: 55
Period size: 3 Copynumber: 15.3 Consensus size: 3
38359 GATGCGTGCT
*
38369 GAA GAA GAA GAA GAA GAA GAA CAGA GAA GTATA GAA GGAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GA-A GAA G-A-A GAA -GAA GAA GAA GAA
38418 G
1 G
38419 GAGTAACAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 32 0.78
4 7 0.17
5 2 0.05
ACGTcount: A:0.60, C:0.02, G:0.34, T:0.04
Consensus pattern (3 bp):
GAA
Found at i:42923 original size:17 final size:17
Alignment explanation
Indices: 42905--42937 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
42895 TTATTTTTTG
42905 GGGC-TAGGTTTAGTTT
1 GGGCTTAGGTTTAGTTT
42921 GGGCTTAGGTTTAGTTT
1 GGGCTTAGGTTTAGTTT
42938 ACTGGATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.12, C:0.06, G:0.36, T:0.45
Consensus pattern (17 bp):
GGGCTTAGGTTTAGTTT
Found at i:43134 original size:31 final size:29
Alignment explanation
Indices: 43064--43137 Score: 85
Period size: 31 Copynumber: 2.5 Consensus size: 29
43054 GCCTCAGGTT
* *
43064 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTACGTTTGAAATGTA
* * *
43093 ACGTTTTAGTCACTTACGTTATTGTATTGTA
1 ACATTTTAGTCACTTACG-T-TTGAAATGTA
43124 ACATTTTAGTCACT
1 ACATTTTAGTCACT
43138 AAGCCATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 16 0.43
30 1 0.03
31 20 0.54
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (29 bp):
ACATTTTAGTCACTTACGTTTGAAATGTA
Found at i:43483 original size:18 final size:18
Alignment explanation
Indices: 43460--43495 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
43450 AAAGAAAATT
43460 ATCTTTGATTACATACTC
1 ATCTTTGATTACATACTC
43478 ATCTTTGATTACATACTC
1 ATCTTTGATTACATACTC
43496 TGTGCGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (18 bp):
ATCTTTGATTACATACTC
Found at i:43783 original size:34 final size:36
Alignment explanation
Indices: 43741--43817 Score: 131
Period size: 34 Copynumber: 2.2 Consensus size: 36
43731 TAAAATCACC
43741 ATAATAATCCATTTTTGGATCC-TT-TATAGCATCA
1 ATAATAATCCATTTTTGGATCCTTTGTATAGCATCA
43775 ATAATAATCCATTTTTGGATCCTTTGTATAGCATCA
1 ATAATAATCCATTTTTGGATCCTTTGTATAGCATCA
*
43811 ACAATAA
1 ATAATAA
43818 GTGTAAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 22 0.55
35 2 0.05
36 16 0.40
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (36 bp):
ATAATAATCCATTTTTGGATCCTTTGTATAGCATCA
Found at i:44657 original size:31 final size:29
Alignment explanation
Indices: 44592--44661 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
44582 TACGAAACGT
**
44592 AAAGTGACTAAAATGTAACATTTCAAACA
1 AAAGTGACTAAAATGTAACAAGTCAAACA
*
44621 TAAGTGACTAAAATGTAACCTGAAGT-AAACA
1 AAAGTGACTAAAATGTAA-C--AAGTCAAACA
44652 AAAGTGACTA
1 AAAGTGACTA
44662 TTTTAATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 17 0.50
30 1 0.03
31 14 0.41
32 2 0.06
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (29 bp):
AAAGTGACTAAAATGTAACAAGTCAAACA
Found at i:51565 original size:144 final size:144
Alignment explanation
Indices: 51406--52700 Score: 2017
Period size: 144 Copynumber: 9.0 Consensus size: 144
51396 AAACAACGGG
* *
51406 CTTGTTGGTCCAATCCCATCTTCTATCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTGAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* * * *
51471 CAACAAAATTAATGGATTCATTCCGCAAGAAATTGGGAGACTAAGGAATTTAGTTGCATTGGATC
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGTTGCATTGGATC
** *
51536 TATCCAACAATAGG
131 TATCCTCCAATAGT
* * *
51550 CTTGTTGGTCCAATCCCATCTTCTATCAGCAACTTAACCAATCTTGTCTCGTTGTTCCTTGAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* ** *
51615 CAACAAACTTAATGGATCCATTCCGCAAGAAATTGGGAGACTAGGGAATTTGGTTGCATTGGATC
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGTTGCATTGGATC
* *
51680 TATCCTACAATAGG
131 TATCCTCCAATAGT
* *
51694 CTTGTTGGTCCAATCCCATCTTCTATCAGCAGCTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* * *
51759 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAAGGAATTT-GTCTGAATTCGAT
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGT-TGCATTGGAT
51823 CTATCCTCCAATAGT
130 CTATCCTCCAATAGT
* *
51838 CTTGTTGGTCCAATCCCATCTTCTGTCAGCGACTTAACCAATCTTTCCTCGTTGTTCCTTCAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* * *
51903 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAAGGAATTT-GTCTGAATTCGAT
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGT-TGCATTGGAT
51967 CTATCCTCCAATAGT
130 CTATCCTCCAATAGT
* *
51982 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAGTCTTGCCTCATTGTTCCTTCAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* *
52047 CAACAAACTTAATGGATCCATTCCTCAAGAAATAGGGAGACTAACGAATTTA-TCTGCATTGGAT
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGT-TGCATTGGAT
52111 CTATCCTCCAATAGT
130 CTATCCTCCAATAGT
* *
52126 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAGTCTTGCCTCATTGTTCCTTCAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* *
52191 CAACAAACTTAATGGATCCATTCCTCAAGAAATAGGGAGACTAACGAATTTA-TCTGCATTGGAT
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGT-TGCATTGGAT
52255 CTATCCTCCAATAGT
130 CTATCCTCCAATAGT
* *
52270 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAGCTTAACCAGTCTTGCCTCGTTGTTCCTTCAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
* *
52335 CAACAAACTTAATGGATCCATTCCTCAAGAAATTGGGAGACTAACGAATTTATTTGCATTGGATC
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGTTGCATTGGATC
52400 TATCCTCCAATAGT
131 TATCCTCCAATAGT
* *
52414 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAGTCTTGACTCGTTGTTCCTTCAAAG
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
*
52479 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTATTTGCATTGGATC
66 CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGTTGCATTGGATC
*
52544 TATCCTCCAATAGA
131 TATCCTCCAATAGT
* *
52558 CTTGTTGGTCCAATCCCATTTTCTGTCAG-ATGCTTAACCAATCTTGCCTCGTTGTTCCTTCAAA
1 CTTGTTGGTCCAATCCCATCTTCTGTCAGCA-ACTTAACCAATCTTGCCTCGTTGTTCCTTCAAA
* * * * * *
52622 GCAACCAACTTAATGGATCCATTCCACCAGGAATTGGGAGTCT-ACTGAATTTGGTGGCATTGGA
65 GCAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAAC-GAATTTAGTTGCATTGGA
*
52686 TCTATCCTTCAATAG
129 TCTATCCTCCAATAG
52701 GCTTTCAGGT
Statistics
Matches: 1099, Mismatches: 47, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
143 5 0.00
144 1093 0.99
145 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (144 bp):
CTTGTTGGTCCAATCCCATCTTCTGTCAGCAACTTAACCAATCTTGCCTCGTTGTTCCTTCAAAG
CAACAAACTTAATGGATCCATTCCACAAGAAATTGGGAGACTAACGAATTTAGTTGCATTGGATC
TATCCTCCAATAGT
Found at i:58113 original size:25 final size:26
Alignment explanation
Indices: 58057--58120 Score: 96
Period size: 24 Copynumber: 2.5 Consensus size: 26
58047 ATAAAAAATA
58057 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATA-TATAACTTTTTTTATTT
58084 ACCAAAATATAT-A-TTTTTTTATTT
1 ACCAAAATATATAACTTTTTTTATTT
58108 ACCCAAAATATAT
1 A-CCAAAATATAT
58121 CCAAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
24 12 0.33
25 12 0.33
26 3 0.08
27 9 0.25
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (26 bp):
ACCAAAATATATAACTTTTTTTATTT
Found at i:58267 original size:4 final size:4
Alignment explanation
Indices: 58258--58386 Score: 72
Period size: 4 Copynumber: 31.0 Consensus size: 4
58248 GAAGGAGAGG
* * *
58258 GAAA GAAA GAAA GGAAG GAGAG GAAA GAAA GAAA AATAA GGAAA GAAAA
1 GAAA GAAA GAAA -GAAA GA-AA GAAA GAAA GAAA GA-AA -GAAA G-AAA
*
58307 GGAAA G-GA GAAGA GAAA -AAA -AAA GAAA GAAA G-AA G-AA GAAGA GGAAA
1 -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA-A -GAAA
*
58354 GGAGAA GAAA -AAA GAAA GAAA GAAG GAAA GAAA
1 -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
58387 AGGAAAGGAG
Statistics
Matches: 103, Mismatches: 8, Indels: 28
0.74 0.06 0.20
Matches are distributed among these distances:
3 17 0.17
4 51 0.50
5 28 0.27
6 7 0.07
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:58278 original size:23 final size:22
Alignment explanation
Indices: 58248--58291 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
58238 GTGGAGGGGA
58248 GAAGGAGAGGGAAAGAAAGAAAG
1 GAAGGAGA-GGAAAGAAAGAAAG
58271 GAAGGAGAGGAAAGAAAGAAA
1 GAAGGAGAGGAAAGAAAGAAA
58292 AATAAGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (22 bp):
GAAGGAGAGGAAAGAAAGAAAG
Found at i:58305 original size:22 final size:22
Alignment explanation
Indices: 58247--58386 Score: 68
Period size: 23 Copynumber: 6.6 Consensus size: 22
58237 GGTGGAGGGG
*
58247 AGAAGGAGAGGGAAAGAAAGAAA
1 AGAAGGAGA-AGAAAGAAAGAAA
* *
58270 GGAAGGAGAGGAAAGAAAGAAAA
1 AGAAGGAGAAGAAAGAAAG-AAA
* *
58293 ATAAGGA-AAGAAAAGGAAAG--G
1 AGAAGGAGAAG-AAA-GAAAGAAA
*
58314 AGAA-GAGAA-AAAAAAAG-AA
1 AGAAGGAGAAGAAAGAAAGAAA
*
58333 AGAA--AGAAGA-AGAAGAGGAA
1 AGAAGGAGAAGAAAGAA-AGAAA
* * *
58353 AGGAGAAGAAAAAAGAAAG-AA
1 AGAAGGAGAAGAAAGAAAGAAA
58374 AGAAGGA-AAGAAA
1 AGAAGGAGAAGAAA
58387 AGGAAAGGAG
Statistics
Matches: 92, Mismatches: 14, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
18 11 0.12
19 10 0.11
20 12 0.13
21 12 0.13
22 19 0.21
23 23 0.25
24 5 0.05
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (22 bp):
AGAAGGAGAAGAAAGAAAGAAA
Found at i:58308 original size:10 final size:10
Alignment explanation
Indices: 58278--58393 Score: 59
Period size: 10 Copynumber: 11.7 Consensus size: 10
58268 AAGGAAGGAG
58278 AGGAAAG-AA
1 AGGAAAGAAA
58287 A-GAAA-AATA
1 AGGAAAGAA-A
58296 AGGAAAGAAA
1 AGGAAAGAAA
*
58306 AGGAAAGGAGA
1 AGGAAA-GAAA
*
58317 AGAGAAAAAAA
1 AG-GAAAGAAA
*
58328 AAGAAAG-AA
1 AGGAAAGAAA
* *
58337 AGAAGAAGAAG
1 AGGA-AAGAAA
*
58348 AGGAAAGGAGA
1 AGGAAA-GAAA
58359 A-G-AA-AAA
1 AGGAAAGAAA
58366 A-GAAAGAAAGA
1 AGGAAAG-AA-A
58377 AGGAAAGAAA
1 AGGAAAGAAA
58387 AGGAAAG
1 AGGAAAG
58394 GAGAAGAGAA
Statistics
Matches: 81, Mismatches: 12, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
7 4 0.05
8 7 0.09
9 9 0.11
10 31 0.38
11 21 0.26
12 9 0.11
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (10 bp):
AGGAAAGAAA
Found at i:58331 original size:42 final size:41
Alignment explanation
Indices: 58285--58410 Score: 175
Period size: 42 Copynumber: 3.1 Consensus size: 41
58275 GAGAGGAAAG
58285 AAAGAAAAATAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
1 AAAGAAAAA-AAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
* * * *
58327 AAAGAAAGAAAGAAGAAGAAGAGGAAAGGAGAAGA-AAAAAG
1 AAAGAAAAAAAGGA-AAGAAAAGGAAAGGAGAAGAGAAAAAA
*
58368 AAAG-AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
1 AAAGAAAAAAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
58408 AAA
1 AAA
58411 AGAAGAAGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
39 19 0.26
40 14 0.19
41 13 0.18
42 27 0.37
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.01
Consensus pattern (41 bp):
AAAGAAAAAAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
Found at i:58394 original size:81 final size:77
Alignment explanation
Indices: 58264--58442 Score: 238
Period size: 81 Copynumber: 2.3 Consensus size: 77
58254 GAGGGAAAGA
* *
58264 AAGAAAGGAAGGAGAGGAAAGAAAGAAAAATAAGGAAAGAAAAGGAAAGGAGAAGAG-AAAAAAA
1 AAGAAAGGAAGGAGAAGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAA
58328 AAGAAAGAAAGAAG
66 AAG-AAG-AAGAAG
58342 AAGAAGAGGAAAGGAGAAGAAA-AAAGAAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
1 AAGAA-AGG-AAGGAGAAGAAAGAAAG-AA-AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
58406 AAAAAAGAAGAAGAAG
62 AAAAAAGAAGAAGAAG
* * *
58422 AGGGAAGGAAGGA-AAAAAAGA
1 AAGAAAGGAAGGAGAAGAAAGA
58443 TTAAAAAAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
77 5 0.06
78 11 0.12
79 10 0.11
80 22 0.24
81 32 0.36
82 10 0.11
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.01
Consensus pattern (77 bp):
AAGAAAGGAAGGAGAAGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAAAA
AAGAAGAAGAAG
Found at i:58404 original size:34 final size:33
Alignment explanation
Indices: 58328--58417 Score: 92
Period size: 39 Copynumber: 2.6 Consensus size: 33
58318 GAGAAAAAAA
*
58328 AAGAAAGAAAGAAGAAGAAGAGGAAAGGAGAAG
1 AAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAG
58361 AAAAAAGAAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAG
1 ----AAGAAAGAAAGAA-G-AAGAAAAGGAAAGGAGAAG
* *
58400 -AGAAAAAAAAAAGAAGAA
1 AAGAAAGAAAGAAGAAGAA
58418 GAAGAGGGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
32 5 0.10
33 1 0.02
34 10 0.21
37 13 0.27
38 1 0.02
39 18 0.38
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (33 bp):
AAGAAAGAAAGAAGAAGAAAAGGAAAGGAGAAG
Found at i:58410 original size:45 final size:44
Alignment explanation
Indices: 58300--58421 Score: 121
Period size: 45 Copynumber: 2.8 Consensus size: 44
58290 AAAATAAGGA
* * * *
58300 AAGAAAAGGAAAGGAGAAGAGAAAA-AA-AAAGAAAGAAAGAAG
1 AAGAAGAGGAAAGGAGAAAAAAAAAGAAGAAAGAAGGAAAGAAG
*
58342 AAGAAGAGGAAAGGAGAAGAAAAAAGAAAGAAAGAAGGAAAGAA-
1 AAGAAGAGGAAAGGAGAAAAAAAAAG-AAGAAAGAAGGAAAGAAG
58386 AAGGAA-AGGAGAA-GAGAAAAAAAAAAGAAG-AAGAAG
1 AA-GAAGAGGA-AAGGAG-AAAAAAAAAGAAGAAAGAAG
58422 AGGGAAGGAA
Statistics
Matches: 70, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
42 23 0.33
43 6 0.09
44 14 0.20
45 27 0.39
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (44 bp):
AAGAAGAGGAAAGGAGAAAAAAAAAGAAGAAAGAAGGAAAGAAG
Found at i:58420 original size:22 final size:22
Alignment explanation
Indices: 58355--58423 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
58345 AAGAGGAAAG
*
58355 GAGAAGAAAAAAGAAAGAAAGAA
1 GAGAAAAAAAAAGAAAG-AAGAA
* * *
58378 G-GAAAGAAAAGGAAAGGAGAA
1 GAGAAAAAAAAAGAAAGAAGAA
58399 GAGAAAAAAAAA-AGAAGAAGAA
1 GAGAAAAAAAAAGA-AAGAAGAA
58421 GAG
1 GAG
58424 GGAAGGAAGG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
21 6 0.16
22 30 0.81
23 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (22 bp):
GAGAAAAAAAAAGAAAGAAGAA
Found at i:58428 original size:29 final size:29
Alignment explanation
Indices: 58380--58442 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
58370 AGAAAGAAGG
58380 AAAGAAAAGGAAAGGAGAAGAGAA-AAAAA
1 AAAGAAAAGGAAAGGAGAAG-GAAGAAAAA
*
58409 AAAGAAGAA-GAAGAGG-GAAGGAAGGAAAA
1 AAAGAA-AAGGAA-AGGAGAAGGAAGAAAAA
58438 AAAGA
1 AAAGA
58443 TTAAAAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
28 3 0.10
29 22 0.73
30 5 0.17
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (29 bp):
AAAGAAAAGGAAAGGAGAAGGAAGAAAAA
Found at i:64878 original size:18 final size:18
Alignment explanation
Indices: 64855--64899 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
64845 ATCCCAATGA
64855 TCGCCACCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
64873 TCGCCAGCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
64891 TCACCACCA
1 TCGCCACCA
64900 ACCATATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.49, G:0.07, T:0.29
Consensus pattern (18 bp):
TCGCCACCACCTTCTTCT
Found at i:65659 original size:11 final size:11
Alignment explanation
Indices: 65639--65678 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
65629 AAAAAAATAC
65639 CTTCTTTTTCT
1 CTTCTTTTTCT
*
65650 CTTCTCTTTCT
1 CTTCTTTTTCT
65661 C-TCTTTTTCT
1 CTTCTTTTTCT
65671 CTTCTTTT
1 CTTCTTTT
65679 CCGCAGCACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:65665 original size:21 final size:20
Alignment explanation
Indices: 65641--65679 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
65631 AAAAATACCT
65641 TCTTTTTCTCTTCTCTTTCTC
1 TCTTTTTCTCTTCT-TTTCTC
65662 TCTTTTTCTCTTCTTTTC
1 TCTTTTTCTCTTCTTTTC
65680 CGCAGCACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (20 bp):
TCTTTTTCTCTTCTTTTCTC
Found at i:65837 original size:27 final size:27
Alignment explanation
Indices: 65763--65840 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
65753 ACACGAGTAA
* *
65763 TGCCGCCAATGCCTTTGGCACCATTGG
1 TGCCGCCAATGGCTTTGGCACCTTTGG
* *
65790 TGCCGCCAATGGCATTAGCACCTTTGG
1 TGCCGCCAATGGCTTTGGCACCTTTGG
*
65817 TGCCGCCAATGGTTTTGGCACCTT
1 TGCCGCCAATGGCTTTGGCACCTT
65841 GGTCAGGGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.15, C:0.31, G:0.26, T:0.28
Consensus pattern (27 bp):
TGCCGCCAATGGCTTTGGCACCTTTGG
Found at i:65959 original size:17 final size:18
Alignment explanation
Indices: 65939--65975 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
65929 TTTATATATT
65939 TTGGTAAATAAAAA-AAA
1 TTGGTAAATAAAAACAAA
65956 TTGGTAAATAAAAACAAA
1 TTGGTAAATAAAAACAAA
65974 TT
1 TT
65976 ATAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.59, C:0.03, G:0.11, T:0.27
Consensus pattern (18 bp):
TTGGTAAATAAAAACAAA
Found at i:75909 original size:26 final size:27
Alignment explanation
Indices: 75850--75951 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 27
75840 TTATAGTTTA
75850 AATAATTTTTTATATTTCTAAAATTTT
1 AATAATTTTTTATATTTCTAAAATTTT
75877 AATAATTTTTTAT-TTT-TAAAATTTT
1 AATAATTTTTTATATTTCTAAAATTTT
* * *
75902 -ATCAAATTTCTTATATGTTTTTAATAATTTC
1 AAT--AATTT-TT-TATATTTCTAA-AATTTT
75933 AATATATTTTTCTATATTT
1 AATA-ATTTTT-TATATTT
75952 ATTTATAAGT
Statistics
Matches: 63, Mismatches: 3, Indels: 15
0.78 0.04 0.19
Matches are distributed among these distances:
24 2 0.03
25 9 0.14
26 8 0.13
27 15 0.24
28 3 0.05
29 3 0.05
30 12 0.19
31 9 0.14
32 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (27 bp):
AATAATTTTTTATATTTCTAAAATTTT
Found at i:83588 original size:144 final size:144
Alignment explanation
Indices: 83389--83699 Score: 561
Period size: 144 Copynumber: 2.2 Consensus size: 144
83379 AAAGCTTGCC
* *
83389 AATTTCTTTTGGG-ATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTCCAGCATCTTTGAT
1 AATTTC-TTGGGGAATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGAT
*
83453 AAACTACCAATACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAA
65 AAACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAA
83518 ATTTGCTAGATTACA
130 ATTTGCTAGATTACA
*
83533 AATTTCTTGGGGAATAGGACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGATA
1 AATTTCTTGGGGAATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGATA
*
83598 AACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTTAAA
66 AACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
83663 TTTGCTAGATTACA
131 TTTGCTAGATTACA
83677 AATTTCTTGGGGAATAGAACCTT
1 AATTTCTTGGGGAATAGAACCTT
83700 GAAGTTGGTT
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 5 0.03
144 155 0.97
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (144 bp):
AATTTCTTGGGGAATAGAACCTTTTAATAGATTAGAACCAAGGCTTAAGTACAGCATCTTTGATA
AACTACCAACACAAGAAGGGATTGAACCAGTCAATTTGTTTTGGGAGAGGTACAATGAAGTCAAA
TTTGCTAGATTACA
Found at i:83948 original size:144 final size:144
Alignment explanation
Indices: 83771--84277 Score: 899
Period size: 144 Copynumber: 3.5 Consensus size: 144
83761 TATTGAATCG
* * *
83771 ACAAGTCTATTGTTGTAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
1 ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
* *
83836 AGATCCATTGATTTGGTTCCCCGAAAGGAGCAGATATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCGAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
*
83901 AAGGGATTGGACCA
131 AAGGGATTCGACCA
* *
83915 ACAATTCCATTGC-TGGAGAGACTCAAATCAGTCAAATTTCTCAAATATCCAATTTCTAATGGGA
1 ACAATTCTATT-CTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGA
83979 TAGATCCATTGATTTGGTTCCCCGAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCA
65 TAGATCCATTGATTTGGTTCCCCGAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCA
84044 GAAGGGATTCGACCA
130 GAAGGGATTCGACCA
*
84059 ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCGAATGGGAT
1 ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
* *
84124 AGATCGATTGATTTGGTTCCCCCAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
66 AGATCCATTGATTTGGTTCCCCGAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
84189 AAGGGATTCGACCA
131 AAGGGATTCGACCA
84203 ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
1 ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
84268 AGATCCATTG
66 AGATCCATTG
84278 CATAAATTAC
Statistics
Matches: 346, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
143 1 0.00
144 345 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (144 bp):
ACAATTCTATTCTTGGAGAGACTCAAATAAGTCAAATTTCTCAAATATCCAATTTCTAATGGGAT
AGATCCATTGATTTGGTTCCCCGAAAGGATCAGAGATTGGAGACTGGTTAATTGACCCAAAGCAG
AAGGGATTCGACCA
Found at i:85747 original size:11 final size:11
Alignment explanation
Indices: 85726--85755 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
85716 TGGATTTGTA
85726 AAAATAAAAAAT
1 AAAA-AAAAAAT
85738 AAAAAAAAAAT
1 AAAAAAAAAAT
85749 AAAAAAA
1 AAAAAAA
85756 GAGAAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAAAAAT
Found at i:87650 original size:15 final size:15
Alignment explanation
Indices: 87630--87659 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
87620 ATTAAAAGAC
87630 CTTACCCCTAAGCAT
1 CTTACCCCTAAGCAT
87645 CTTACCCCTAAGCAT
1 CTTACCCCTAAGCAT
87660 TATTGAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.07, T:0.27
Consensus pattern (15 bp):
CTTACCCCTAAGCAT
Found at i:95856 original size:20 final size:20
Alignment explanation
Indices: 95819--95882 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 20
95809 TTTAAATTAA
95819 AAATAATATTTAAAAAAATATT
1 AAATAA-ATTT-AAAAAATATT
*
95841 -ATTAAAATTTAAAAAATATT
1 AAAT-AAATTTAAAAAATATT
95861 AAATAAATTTAAAAAAT-TT
1 AAATAAATTTAAAAAATATT
95880 AAA
1 AAA
95883 ATTGATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 5 0.13
20 23 0.61
21 8 0.21
22 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAAATTTAAAAAATATT
Found at i:95879 original size:9 final size:9
Alignment explanation
Indices: 95844--95883 Score: 62
Period size: 9 Copynumber: 4.2 Consensus size: 9
95834 AAATATTATT
95844 AAAATTTAA
1 AAAATTTAA
95853 AAAATATTAA
1 AAAAT-TTAA
95863 ATAAATTTAA
1 A-AAATTTAA
95873 AAAATTTAA
1 AAAATTTAA
95882 AA
1 AA
95884 TTGATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 15 0.52
10 10 0.34
11 4 0.14
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATTTAA
Found at i:98307 original size:15 final size:15
Alignment explanation
Indices: 98275--98321 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
98265 TATAAACACA
* *
98275 TATTTTTA-TATATA
1 TATTTTTATTATTTT
98289 TATTTTTATTATTTT
1 TATTTTTATTATTTT
* *
98304 TATTTTCATAATTTT
1 TATTTTTATTATTTT
98319 TAT
1 TAT
98322 ATATATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 8 0.29
15 20 0.71
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTATTATTTT
Found at i:99526 original size:107 final size:107
Alignment explanation
Indices: 99330--99526 Score: 317
Period size: 107 Copynumber: 1.8 Consensus size: 107
99320 ATAAAGGCAA
* *
99330 TATTTTGCATTTGGAAATTTGAGAAAGCGTGCCCTAATGTGTTGGGTTTCGATTTTTTTTGTTCG
1 TATTTTGCATTTGGAAATTTGAGAAAGCGTGCCCTAATGTGCTGGGTTTCGATTTTTTTCGTTCG
99395 ACCAAATAGCCAAATATCCTTTAAAATTTCAGAGAAATGCAT
66 ACCAAATAGCCAAATATCCTTTAAAATTTCAGAGAAATGCAT
* *
99437 TATTTTGCGTTTGGAAATTTGAGGAAA-CGTGCCCTAATGTGCTGGGTTTCGA-TTTTTTCGTTT
1 TATTTTGCATTTGGAAATTTGA-GAAAGCGTGCCCTAATGTGCTGGGTTTCGATTTTTTTCGTTC
*
99500 GACCAAATAGCCAAATATTCTCTTAAA
65 GACCAAATAGCCAAATATCCT-TTAAA
99527 TCTTAATCCA
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
106 29 0.35
107 50 0.60
108 4 0.05
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (107 bp):
TATTTTGCATTTGGAAATTTGAGAAAGCGTGCCCTAATGTGCTGGGTTTCGATTTTTTTCGTTCG
ACCAAATAGCCAAATATCCTTTAAAATTTCAGAGAAATGCAT
Found at i:100797 original size:6 final size:6
Alignment explanation
Indices: 100787--100817 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
100777 CTTAGATTTT
*
100787 GAAAAT GAAAAC GAAAAC GAAAAC GAAAAC G
1 GAAAAC GAAAAC GAAAAC GAAAAC GAAAAC G
100818 GGAGTCGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.13, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAC
Found at i:102739 original size:13 final size:14
Alignment explanation
Indices: 102710--102748 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
102700 TCTCTGCCTC
* *
102710 ATTTGTCGTTTTCT
1 ATTTGTTGTTCTCT
102724 ATTTGTT-TTCTCT
1 ATTTGTTGTTCTCT
102737 ATTTGTTGTTCT
1 ATTTGTTGTTCT
102749 GTTGGTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.67
Consensus pattern (14 bp):
ATTTGTTGTTCTCT
Found at i:105305 original size:42 final size:43
Alignment explanation
Indices: 105240--105371 Score: 198
Period size: 43 Copynumber: 3.1 Consensus size: 43
105230 CGTTTCACAG
105240 TCAAGGATACGGTGGAATCAGCACTTAGCAACCACCTTTATAT
1 TCAAGGATACGGTGGAATCAGCACTTAGCAACCACCTTTATAT
* * *
105283 TCAATGATACGG-GGAATCAGCACATAGCAACC-CCTTTCACAGT
1 TCAAGGATACGGTGGAATCAGCACTTAGCAACCACCTTT-ATA-T
105326 T-AAGGATACGGTGGAATCAGCACTTAGCAACCACCTTTATAT
1 TCAAGGATACGGTGGAATCAGCACTTAGCAACCACCTTTATAT
105368 TCAA
1 TCAA
105372 TGATGCAGAT
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
41 5 0.06
42 32 0.41
43 36 0.46
44 5 0.06
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (43 bp):
TCAAGGATACGGTGGAATCAGCACTTAGCAACCACCTTTATAT
Found at i:105463 original size:51 final size:51
Alignment explanation
Indices: 105383--105613 Score: 227
Period size: 51 Copynumber: 4.5 Consensus size: 51
105373 GATGCAGATT
* * *
105383 CACATAGTAGCATGCACATAGTACTACACATGTGA-CCATCA-CTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCCA--AGCTATCCGGTA
* * *
105434 CACGTAGTAGCCTGCACATAATACTACACACGTGATCGAAGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTATCCGGTA
*** * * * * * *
105485 TGTATAGTAGCCTACACATAGTACTACACATGCGA-CCTATC-ATTCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTA-TCCGGTA
* * * *
105535 CACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAGCTATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTATCCGGTA
*
105586 CGCATAGTAGCCTGCACATAGTACTACA
1 CACATAGTAGCCTGCACATAGTACTACA
105614 NNNNNNNNNN
Statistics
Matches: 145, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
49 1 0.01
50 39 0.27
51 102 0.70
52 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTATCCGGTA
Found at i:105562 original size:101 final size:102
Alignment explanation
Indices: 105385--105613 Score: 345
Period size: 101 Copynumber: 2.3 Consensus size: 102
105375 TGCAGATTCA
* * *
105385 CATAGTAGCATGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
*
105450 CATAATACTACACACGTGATCGAAGCTATCCGGTATG
66 CATAATACTACACACGTGATCGAAGCTATCCGGTACG
* * * *
105487 TATAGTAGCCTACACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTAC
* *
105550 ACATAGTACTACACACGTGATCGAAGCTATCTGGTACG
65 ACATAATACTACACACGTGATCGAAGCTATCCGGTACG
105588 CATAGTAGCCTGCACATAGTACTACA
1 CATAGTAGCCTGCACATAGTACTACA
105614 NNNNNNNNNN
Statistics
Matches: 114, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
101 78 0.68
102 32 0.28
103 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
CATAATACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:107056 original size:87 final size:87
Alignment explanation
Indices: 106768--107641 Score: 1245
Period size: 87 Copynumber: 10.1 Consensus size: 87
106758 ACATGTAATC
** * * * * * * *
106768 TTCGATCTGCTTCACTGTCGACGCAGGAGGGGAATATCTACTATCTTTAACCAGCTCCATTGTAA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
106833 CTGATTGAGGCAAGGCTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* * * * *
106855 TTCGATTTGCTTCATTGTCAATGCAGGAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTG-TA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
106919 CTGATGGAGGCAAGGCTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* * * *
106941 TTCGATCTGCTTCGCTGTTAACGTAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
107006 CCGATGGAGGCAAGACTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* * *
107028 TTCGATCTGCTTCACTCTTAATGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
107093 CCGATGGAGGCAAGGCTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* * * * *
107115 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTTAACCAACTCCACTACAA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
107180 CCGATGGAGGCAAGGCTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* * *
107202 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
107267 CCGATGGAGGCAAGGCTTTATT
66 CTGATGGAGGCAAGGCTTTGTT
* * * *
107289 TTTGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTG-TA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
107353 CTGATGGAGGCAAGGCTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* *
107375 TTCGATCTGCTTCACTGTTAACGTC-GGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTG-T
1 TTCGATCTGCTTCACTGTTAATG-CAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
107438 ACTGATGGAGGCAAGGCTTTGTT
65 ACTGATGGAGGCAAGGCTTTGTT
* * * *
107461 TTCGATCTGCTTCGCTGTTAATGGAGGAAGGAAAGATCTGCTATCTTTAACCAGCTCCACTG-TA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
107525 CTGATGGAGGCAAGGCTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
* * *
107547 TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCTATCTTTAACCAGCTACACTGCAA
1 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
107612 CTAATGGAGGCAAGGTTTTGTT
66 CTGATGGAGGCAAGGCTTTGTT
107634 TTCGATCT
1 TTCGATCT
107642 TCACTGATCT
Statistics
Matches: 720, Mismatches: 63, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
86 317 0.44
87 403 0.56
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (87 bp):
TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CTGATGGAGGCAAGGCTTTGTT
Found at i:107063 original size:43 final size:43
Alignment explanation
Indices: 107013--107150 Score: 106
Period size: 43 Copynumber: 3.2 Consensus size: 43
107003 CAACCGATGG
107013 AGGCAAGACTTTGTTTTCGATCTGCTTCACTCTTAATGCAGGA
1 AGGCAAGACTTTGTTTTCGATCTGCTTCACTCTTAATGCAGGA
* * * * * *
107056 AGGCAAGATCTGTTATCTTT-AACCAGCTCCACTAC--AA-CCGATGG-
1 AGGCAAGA-CT-TTGT-TTTCGATCTGCTTCACT-CTTAATGC-A-GGA
* * *
107100 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGACTTTGTTTTCGATCTGCTTCACTCTTAATGCAGGA
107143 AGGCAAGA
1 AGGCAAGA
107151 TCTGTTGTCT
Statistics
Matches: 68, Mismatches: 16, Indels: 22
0.64 0.15 0.21
Matches are distributed among these distances:
41 3 0.04
42 13 0.19
43 21 0.31
44 13 0.19
45 14 0.21
46 4 0.06
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
AGGCAAGACTTTGTTTTCGATCTGCTTCACTCTTAATGCAGGA
Found at i:107175 original size:174 final size:172
Alignment explanation
Indices: 106768--107641 Score: 1237
Period size: 173 Copynumber: 5.0 Consensus size: 172
106758 ACATGTAATC
* ** * * * * * *
106768 TTCGATCTGCTTCACTGTCGACGCAGGAGGGGAATATCTACTATCTTTAACCAGCTCCATTGTAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTG-AA
* * * * *
106833 CTGATTGAGGCAAGGCTTTGTTTTCGATTTGCTTCATTGTCAATGCAGGAAGGCAAGATCAGCTA
65 CTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTA
**
106898 TCTTTAACCAGCTCCACTGTACTGATGGAGGCAAGGCTTTGTT
130 TCTTTAACCAGCTCCACTCAACTGATGGAGGCAAGGCTTTGTT
* * *
106941 TTCGATCTGCTTCGCTGTTAACGTAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTG-AA
* * * *
107006 CCGATGGAGGCAAGACTTTGTTTTCGATCTGCTTCACTCTTAATGCAGGAAGGCAAGATCTGTTA
65 CTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTA
*
107071 TCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTT
130 TCTTTAACCAGCTCCACT-CAACTGATGGAGGCAAGGCTTTGTT
* * * *
107115 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTGTCTTTAACCAACTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACT-GAA
* * *
107180 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
65 CTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTA
* *
107245 TCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATT
130 TCTTTAACCAGCTCCACT-CAACTGATGGAGGCAAGGCTTTGTT
* * * * *
107289 TTTGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCAGCTATCTTTAACCAGCTCCACTGTAC
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGAAC
*
107354 TGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGTC-GGAAGGCAAGATCTGCTA
66 TGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAATG-CAGGAAGGCAAGATCTGCTA
**
107418 TCTTTAACCAGCTCCACTGTACTGATGGAGGCAAGGCTTTGTT
130 TCTTTAACCAGCTCCACTCAACTGATGGAGGCAAGGCTTTGTT
* * *
107461 TTCGATCTGCTTCGCTGTTAATGGAGGAAGGAAAGATCTGCTATCTTTAACCAGCTCCACTGTAC
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGAAC
* *
107526 TGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCTAT
66 TGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTAT
* * *
107591 CTTTAACCAGCTACACTGCAACTAATGGAGGCAAGGTTTTGTT
131 CTTTAACCAGCTCCACT-CAACTGATGGAGGCAAGGCTTTGTT
107634 TTCGATCT
1 TTCGATCT
107642 TCACTGATCT
Statistics
Matches: 631, Mismatches: 65, Indels: 10
0.89 0.09 0.01
Matches are distributed among these distances:
172 157 0.25
173 237 0.38
174 237 0.38
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (172 bp):
TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGAAC
TGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTAT
CTTTAACCAGCTCCACTCAACTGATGGAGGCAAGGCTTTGTT
Found at i:107236 original size:43 final size:43
Alignment explanation
Indices: 107100--107236 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
107090 CAACCGATGG
*
107100 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
* * * ** * * **
107143 AGGCAAGATCTGTTGTCTTT-AACCAACTCCACT-ACAAC-CGATGG-
1 AGGCAAG-GCT-TTGT-TTTCGATCTGCTTCGCTGTTAACGC-A-GGA
107187 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
107230 AGGCAAG
1 AGGCAAG
107237 ATCTGCTATC
Statistics
Matches: 66, Mismatches: 19, Indels: 18
0.64 0.18 0.17
Matches are distributed among these distances:
41 3 0.05
42 13 0.20
43 21 0.32
44 13 0.20
45 13 0.20
46 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
Found at i:108955 original size:6 final size:6
Alignment explanation
Indices: 108915--108946 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
108905 TCTTTTATTC
108915 TTGATT TTGATT TTGATT TTGATT TTGATT TT
1 TTGATT TTGATT TTGATT TTGATT TTGATT TT
108947 TTTGATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.69
Consensus pattern (6 bp):
TTGATT
Found at i:108960 original size:20 final size:21
Alignment explanation
Indices: 108925--108964 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108915 TTGATTTTGA
108925 TTTTGATTTTGATTTTGATTT
1 TTTTGATTTTGATTTTGATTT
*
108946 TTTTGATTTT-TTTTTGATT
1 TTTTGATTTTGATTTTGATT
108965 GAATCTGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.75
Consensus pattern (21 bp):
TTTTGATTTTGATTTTGATTT
Found at i:111522 original size:19 final size:20
Alignment explanation
Indices: 111493--111544 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
111483 CATTTTGTAA
* *
111493 AAATCTAATGCACATG-ATG
1 AAATGTAATGCAAATGCATG
*
111512 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
111532 AAATG-AATGCAAA
1 AAATGTAATGCAAA
111545 AAGAGACATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.23
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:112649 original size:6 final size:6
Alignment explanation
Indices: 112639--112669 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
112629 CTTAGATTTT
*
112639 GAAAAT GAAAAC GAAAAC GAAAAC GAAAAC G
1 GAAAAC GAAAAC GAAAAC GAAAAC GAAAAC G
112670 GGAGTTGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.13, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAC
Found at i:113700 original size:16 final size:16
Alignment explanation
Indices: 113681--113713 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
113671 AAAAACAAAT
*
113681 ATAAAAAAATAAGTAA
1 ATAAAAAAATAACTAA
113697 ATAAAAAAATAACTAA
1 ATAAAAAAATAACTAA
113713 A
1 A
113714 AATGAGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (16 bp):
ATAAAAAAATAACTAA
Found at i:114592 original size:13 final size:14
Alignment explanation
Indices: 114563--114601 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
114553 TCTCTGCCTC
* *
114563 ATTTGTCGTTTTCT
1 ATTTGTTGTTCTCT
114577 ATTTGTT-TTCTCT
1 ATTTGTTGTTCTCT
114590 ATTTGTTGTTCT
1 ATTTGTTGTTCT
114602 GTTGGTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.08, C:0.13, G:0.13, T:0.67
Consensus pattern (14 bp):
ATTTGTTGTTCTCT
Found at i:116796 original size:27 final size:28
Alignment explanation
Indices: 116748--116802 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
116738 CTTCTATCGT
116748 TCCTGTTAATCCAAAGTCTAATATTATC
1 TCCTGTTAATCCAAAGTCTAATATTATC
116776 TCCTGTTAAT-CAAAGTCTAATATTATC
1 TCCTGTTAATCCAAAGTCTAATATTATC
116803 CAAACCTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 17 0.63
28 10 0.37
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (28 bp):
TCCTGTTAATCCAAAGTCTAATATTATC
Found at i:126471 original size:144 final size:144
Alignment explanation
Indices: 126279--126582 Score: 436
Period size: 144 Copynumber: 2.1 Consensus size: 144
126269 TACAAGGAAA
* * *
126279 AAGGTATTGAACCAACCAGTTTGTTGTCGTAGACATCGAAATAAGTTAAGTTTGATAAGAATCCA
1 AAGGGATTGAACCAACCAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
** * *
126344 ACTTTAGATGGAATAGATCCATTGATTTTGTTTCCC-ACAAGAATT-AAGTATTTGAGG-TTTAA
66 ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTA-AAGAATTAAAG-ATTTG-GGATTTAA
* * *
126406 TAACTGACTCGAAGCAG
128 TAACTAACCCAAAGCAG
*
126423 AAGGGATTGAACCAACTAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
1 AAGGGATTGAACCAACCAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
126488 ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTAAAGAATTAAAGATTTGGGATTTAATAA
66 ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTAAAGAATTAAAGATTTGGGATTTAATAA
*
126553 CTAACCCAAAGTAG
131 CTAACCCAAAGCAG
126567 AAGGGATTTG-ACCAAC
1 AAGGGA-TTGAACCAAC
126583 AATTCCACAA
Statistics
Matches: 144, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
143 2 0.01
144 135 0.94
145 7 0.05
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (144 bp):
AAGGGATTGAACCAACCAGTCTGTTGTCGTAGACATCAAAATAAGTTAAGTTTGATAAGAATCCA
ACTCCAGATGGAATAGATCCATTAATTTTGTTGCCCTAAAGAATTAAAGATTTGGGATTTAATAA
CTAACCCAAAGCAG
Found at i:132614 original size:5 final size:5
Alignment explanation
Indices: 132604--132644 Score: 59
Period size: 5 Copynumber: 8.4 Consensus size: 5
132594 AAAGTATATC
132604 AAGAA AAG-A AA-AA AAGAA GAAGAA AAGAA AAGAA AAGAA AA
1 AAGAA AAGAA AAGAA AAGAA -AAGAA AAGAA AAGAA AAGAA AA
132645 AGGAGAGGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 6 0.18
5 22 0.67
6 5 0.15
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:132629 original size:11 final size:11
Alignment explanation
Indices: 132609--132642 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
132599 ATATCAAGAA
*
132609 AAGAAAAAAAG
1 AAGAAGAAAAG
132620 AAGAAGAAAAG
1 AAGAAGAAAAG
132631 AA-AAGAAAAG
1 AAGAAGAAAAG
132641 AA
1 AA
132643 AAAGGAGAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAGAAGAAAAG
Found at i:134050 original size:89 final size:89
Alignment explanation
Indices: 133898--134665 Score: 1029
Period size: 89 Copynumber: 8.6 Consensus size: 89
133888 AATAGATCAA
* * *
133898 TGAAGATAGCAGATCTTGCCTTCCTGTCCTGACAGCGAAGCAGATCGAAGACACTAGCATTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
133963 TCGTGTACTGACAGCGGAGCATAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
133987 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACAGTGAAGTAGATCGAAGACACCAACCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
** * *
134052 TTATGTACTGACAGCAGAGCAAAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * *
134076 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGTAGATCAAAGACACCAGCCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
134141 TCCTGTACTGACAACGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* *
134165 TGAAGATAGCAGATCTTGCCTTCCTGTACTGATAGTGAAGCAGATCGAATG-CACCAGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAA-GACACCAGCCTTGCC
*
134229 TTCCTGTACTGATAGCGGAGCAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
* * * * *
134254 TGAAGATAGTAGATCTTACCTTCTTGTACTGACAGCGAAGCATATCAAAGACACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
134319 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * *
134343 TGAAGGTAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAAATCGAAGACACTAGCCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
134408 TCTTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * **
134432 TGAAGGTAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAGTTTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
134497 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* ** * * * * * *
134521 TAAAGATAATAGATCTCGCCTTCCTGTACTAACAACGAAGAAGATCGAAGACACTAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * *
134586 CCCTAGGT-TTG-TAGTGAAGCAGAC
66 TCCT--GTACTGACAGCGGAGCAGAC
* *
134610 TGAAGATAGCAGATCTTGCCTTCTTGTACTGACAGCGAAGCAGATCAAAGACACCA
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA
134666 TAGTTTGCAG
Statistics
Matches: 595, Mismatches: 80, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
88 1 0.00
89 589 0.99
90 3 0.01
91 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (89 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:135126 original size:94 final size:95
Alignment explanation
Indices: 134882--135129 Score: 268
Period size: 94 Copynumber: 2.6 Consensus size: 95
134872 ATACAAATCC
** * * * **
134882 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAACTATAAATCCTATACCTCTGAAGTT-ACAGT
1 TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCCACGAATCCTATACCTCTGAAGTTGACAGT
* *
134946 AGGTTGGATTAAATTTACCATGACAAGTCT
66 AGGTCGGATTAAATTTACCATGACAAGCCT
* * * * * *
134976 TATCTCCCAAAAGTTGCAGTAGAGTATACTGAAGCTACTAATCCTATACCTCTGAAGTTGA-AGT
1 TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCCACGAATCCTATACCTCTGAAGTTGACAGT
135040 AGGTCGGATTAAATTTACCATGACAAGCCT
66 AGGTCGGATTAAATTTACCATGACAAGCCT
**** * * *
135070 TATCTCCCTGTCGTTACAGTGGAGCAGACTAAAGCCACGAAT-CTCATCCCTTTGAAGTTG
1 TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCCACGAATCCT-ATACCTCTGAAGTTG
135130 CTGCGAAGAA
Statistics
Matches: 127, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
93 2 0.02
94 124 0.98
95 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (95 bp):
TATCTCCCAAAAGTTACAGTAGAGCAGACTAAAGCCACGAATCCTATACCTCTGAAGTTGACAGT
AGGTCGGATTAAATTTACCATGACAAGCCT
Found at i:136453 original size:129 final size:129
Alignment explanation
Indices: 136284--136541 Score: 507
Period size: 129 Copynumber: 2.0 Consensus size: 129
136274 TTTATTTGTA
136284 GATTTAAACCCCGAATTTTATTTTAAAGTTTAATTTAGTCATTTTGTTATTTTGTTTATTTTCTT
1 GATTTAAACCCCGAATTTTATTTTAAAGTTTAATTTAGTCATTTTGTTATTTTGTTTATTTTCTT
136349 AATAAATTTAATATTATTACTATTATTATTAATTATTATTGTAATTATTTGCTCATTTATATTT
66 AATAAATTTAATATTATTACTATTATTATTAATTATTATTGTAATTATTTGCTCATTTATATTT
136413 GATTTAAACCCCGAATTTTATTTTAAAGTTTAATTTAGTCATTTTGTTATTTTGTTTATTTTCTT
1 GATTTAAACCCCGAATTTTATTTTAAAGTTTAATTTAGTCATTTTGTTATTTTGTTTATTTTCTT
*
136478 AATAAATTTAATATTTTTACTATTATTATTAATTATTATTGTAATTATTTGCTCATTTATATTT
66 AATAAATTTAATATTATTACTATTATTATTAATTATTATTGTAATTATTTGCTCATTTATATTT
136542 TTTAAATTTA
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 128 1.00
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (129 bp):
GATTTAAACCCCGAATTTTATTTTAAAGTTTAATTTAGTCATTTTGTTATTTTGTTTATTTTCTT
AATAAATTTAATATTATTACTATTATTATTAATTATTATTGTAATTATTTGCTCATTTATATTT
Found at i:139141 original size:16 final size:15
Alignment explanation
Indices: 139104--139133 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
139094 TTTTGAAGAC
139104 CAAAATTAAATATAA
1 CAAAATTAAATATAA
139119 CATAAATTAAATATA
1 CA-AAATTAAATATA
139134 TCGAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 2 0.14
16 12 0.86
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
CAAAATTAAATATAA
Found at i:143059 original size:27 final size:28
Alignment explanation
Indices: 143010--143066 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
143000 TTTAAAAGTT
*
143010 AATGACCTAAAAGCCTATCAC-AAATAA
1 AATGACCTAAAAACCTATCACAAAATAA
** *
143037 AATGACCTAAAAATGTATTACAAAATAA
1 AATGACCTAAAAACCTATCACAAAATAA
143065 AA
1 AA
143067 CCGTAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.56, C:0.16, G:0.07, T:0.21
Consensus pattern (28 bp):
AATGACCTAAAAACCTATCACAAAATAA
Found at i:144795 original size:44 final size:44
Alignment explanation
Indices: 144706--144885 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
144696 AAAGGGGACG
* * * *
144706 AGATTTGTGGTTTTAGTCTGCTCCACTGCAACTTTAGGGAA-ATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCA-GGAAGATA
* * * *
144750 AGACTGGTGGCTTCAATCTACTCCATTGCAACTTCAGGAAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
** * *
144794 AGATTTGTCACTTCAACCTGC-CTCACTGCAACTTCAAGG-GGATA
1 AGATTTGTGGCTTCAATCTGCTC-CACTGCAACTTC-AGGAAGATA
* * *
144838 AGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
1 AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
144882 AGAT
1 AGAT
144886 CTACCATGAT
Statistics
Matches: 108, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
43 8 0.07
44 96 0.89
45 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
AGATTTGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
Found at i:145032 original size:97 final size:97
Alignment explanation
Indices: 144920--145923 Score: 1166
Period size: 97 Copynumber: 10.4 Consensus size: 97
144910 CCACTATGAT
* * * *
144920 GCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCATTGTAACGCCAAGGAAATAAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * * *
144985 ATTCTCTGCCTTGAGCTTTAATCTACTGTGAT
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * ** * *
145017 GCCAAGGAAATAAGATTCGTTACCTTCAATTTTAATCTGTTTCATTGCAACGCCAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * *
145082 ATTTGCTGCCTTCAGCTTTAATCTATTTCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * * *
145114 ACTAGGGAAATAAGATTCGCTGCCTTTAACTTTAAACTGTTCCACTGCAACGCCAATGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * *
145179 ATTTGCTGCATTCA-CTTTTAATCTACTACGAC
66 ATTCGCTGCCTTCAGC-TTTAATCTACTGCGAC
* * * * * * * * *
145211 GTCGGGGAAATAAGATTCGCTGCCTTCAACTTTAATCTATCCCACTACAATGCCAAAGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
*
145276 ATTCGCTGCCTTCAGCTTTAATCTACTGCAAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * ** * *
145308 GCCAGGGAAATAAGATTCGCTGCCTTAAGGTTTACTCTGTTCCACTGCAATACCAAAGAAATGTG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* * * *
145373 ATTCGCTACCTTTAGCTTTAATCTACTACGAG
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * * * * *
145405 GCCAAGGAAATAAGATTTGTTACCTTCAGCCTCAATCTATTCCACTACACCGCCAAGGAAATAAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* *
145470 ATTCACTACCTTCAGCTTTAATCTACTGCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * *
145502 GCCAAGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGTAACGCCAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* **
145567 ATTCGCTGCCTTTAGCTTTAATCTACTATGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * * *
145599 GCCAGGGAAATAAGATTTGGTACCTTCAGCTATAATCTATTCCACCGTAACGCCAAGGAAATGAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
* *
145664 ATTCGTTGTCTTCAGCTTTAATCTACTGCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * *
145696 GCCAGGGAAATAAGATTTACTGCCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGCAAT-AT
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGA-
* * *
145760 GATTCGCTACCTTCAGGTTTAATCTACTGTGAC
65 GATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
* * * * *
145793 ACCAGGGAAATAGGATTTGCTGCCTTCAGCTTTAATCTGTTCCTCTGCAACGCAAAGGAAATCAG
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
145858 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
66 ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
*
145890 GCCAGGGAAATAAGATTTGCTGGCTTCAGCTTTA
1 GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTA
145924 CAACCCTCGC
Statistics
Matches: 768, Mismatches: 135, Indels: 8
0.84 0.15 0.01
Matches are distributed among these distances:
96 2 0.00
97 764 0.99
98 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (97 bp):
GCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAG
ATTCGCTGCCTTCAGCTTTAATCTACTGCGAC
Found at i:146550 original size:17 final size:18
Alignment explanation
Indices: 146508--146550 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
146498 TTGGTCAATT
146508 GTTAA-TTTTTATATTTG
1 GTTAATTTTTTATATTTG
**
146525 GTTTCTTTTTTA-ATTTG
1 GTTAATTTTTTATATTTG
146542 GTTAATTTT
1 GTTAATTTT
146551 GGCCAGGCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (18 bp):
GTTAATTTTTTATATTTG
Found at i:146853 original size:44 final size:44
Alignment explanation
Indices: 146801--146975 Score: 219
Period size: 44 Copynumber: 4.0 Consensus size: 44
146791 GGGAAGAGAT
* * *
146801 TTGTGGTTTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGAC
1 TTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
* **
146845 TGGTGG-TTTCAATCTGCTCCACTGCAACTTCATGGG-GATAAGGG
1 TTGTGGCTTT-AATCTGCTCCACTGCAACTTCA-GGGAGATAAGAC
* * **
146889 TTGTGGCTTTAATCTGCTCTACTGCAACTTCAGGGGGATAAGGT
1 TTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
*
146933 TTGTGGCTTTAATCTGCTCCACTGCAAGTTCAGGGAGATAAGA
1 TTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
146976 TCTACCATGA
Statistics
Matches: 115, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
43 6 0.05
44 103 0.90
45 6 0.05
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (44 bp):
TTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
Found at i:147131 original size:97 final size:96
Alignment explanation
Indices: 147001--153771 Score: 2316
Period size: 97 Copynumber: 69.5 Consensus size: 96
146991 TCAAACCATC
* *
147001 CCACTGCAACGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
*
147066 ATAAGATTCGCTGCCTTCAGCTTTAAACTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
147098 CCACTGTATTGCCCAGAAAGTAAGATTCACTGCCTTCAACTTTAATTTACTACGATG-CAAGGGA
1 CCACTGCAATGCCAAGAAA-TAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAA-GGA
*
147162 AATAAGATTCACTGCCTTCAGCTTTAATCTGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * *
147195 CCACTGCAACGCCATGGAAATAACATTCTCCGCCTTCAGCTTTAGTCTACTGCGATGCTAGGGAA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
147260 ATAAGATTCGCTGCCTTCAG-TGTTAATCTGTT
65 ATAAGATTCGCTGCCTTCAGCT-TTAATCTGTT
** * * ** *
147292 CCACTGCAATGCCAAGGAAATGTGATTCGCTGCCTTTAGTTTTAATCTACTAAGACGAC-AGAGA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-GA
* * * * * *
147356 AATAATATTTGTTGGCTTCAACTTTAATTTGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* **** * * * * *
147389 CTACTGCAAAATTAAGAAAATAAGATTCGTTTCCTTTAGCTTTAATCTACTGCGACGTCAATGAA
1 CCACTGCAATGCCAAG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
147454 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
147486 CCACTACAATGCCAAAGAAATGAGATTCACTGCCTTCAACTTTAATCTACTGTGAAGCC-AGAGA
1 CCACTGCAATGCC-AAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-GA
* * * *
147550 AATAAGATTCACCGCTTTCAACTTTAATC---T
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
147580 --ACTGCGACGCCAGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACT-CGAATGCC
1 CCACTGCAATGCCAAG-AAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCG-ACGCC
* *
147642 AAGAAAATGAGATTCGCTGCCTTCAGCTTTAATC---T
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * * * * * * *
147677 --ACTGTGACGTCAGGAAAATAAGATT-ACTTCTTTCAGCTTTAATATGTTCCAGTGCAACGCCA
1 CCACTGCAATGCCAAG-AAATAAGATTCGCTGCCTTCAGCTTT-A-A---TCTACTGCGACGCCA
* * * * ** **
147739 GGGAAATGAGATTCGATGCCTTTAAATTTAATCTAGAG
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-GTT
* * * * * * * *
147777 CGAC-GCTA-G---GGAAAAAAG-TTTGCTGCCGTCAGCTTTAATTTCTTCCACTGCAATG-CAA
1 CCACTGCAATGCCAAGAAATAAGATTCGCTGCCTTCAGCTTTAA--TC-T--ACTGCGACGCCAA
* * *
147835 TGGAAATGAGATTCGCTGCCTTTAGCTTTAATCTATT
61 -GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * *
147872 CCACTGCAACGGAAATGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* *
147937 ATAAGATTCGCTGCCTTCAACTTTAATCTATT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * * * *
147969 CCACTGCAACACCAAGGAAATAAGATTTGCTACGTGCAGCTTTAATCTACTGCGATGCCAGGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* ** * * *
148034 ATAAAATTTACTGCCTTTAACTTTAATTTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
148066 CCACTGCAATGCCAGGGAAATGATATTTC-CTGCCTTTAGCTTTAATCTACTGCGACG-CTAGAG
1 CCACTGCAATGCCA-AGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-G
* * *
148129 AAATAAGATTTGTTGCCTCCTA-CTTTAATCTGTT
63 AAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTT
** * * * * * * * **
148163 CCACTGCAACACTAAGGAAATGAGATTTGCTACCTTTAGCTTTAATCTAATGTGACGTTAAGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * *
148228 ATAAGATTTGTTGCCTTCAGCTTTAATTTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
148260 CCACTACAACGCCAAGGAAAGGAGATTCGCTGTCATCAGCTTTAATCTGTTCCACTGCAACGCCA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * * *
148325 GGGAAATAAGATTCACTGGCTTTATCTTT-A---G-T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * **
148357 CTACTGCGACGCCAGGGAAATAAGGTTTGCTGCCTTCAGTTTTAATCTGTTCCGCTGCAATACCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * *
148422 AGGAGATGAGATTCGTTACCTTCAGCTTTAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * ** * * * * * *
148456 --ACTGCGACGCTAGGGAAATAATATTTACTACCTTCAGCTTTATTCTGTTCCACTACAATGCTA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * * *
148519 GGGAAATGAA-ATTTGTTGCCTCCTGCTTTAATC---T
60 AGGAAAT-AAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * ** **
148553 --ACTGCGACGCTAGGGAAATAAGATTTGTTACCGCCAGCTTTAATCTGTTCCACTGCGACTACA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
** * * *
148616 AAAAAATGAGATTCTCTGGCTTCAGCTTTAA-C----
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * *
148648 CTACTGCGACGCTAGGGAAATAAGATTCACTGCCTTCTGCTTTAATCTATTCCACTACAACGCTA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* *
148713 AGGAAATAAGACTCGCTGCCTTCATCTTTAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
148747 --ACTGCGATGCCAGGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATTCTACTGCAATGCAA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTT-A---A-TCTACTGCGACGCCA
* * * * *
148810 ATGAAATGAGATTCACTGCCTTCAACTTGAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * *
148844 --ACTGCGACGCCAGGGAAATAAGATTTGTTGCCTTTAACTTTAATCTGTTCCACTACAACGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * *
148907 AGGAAATAAGATTCACTTCCTTCAGCTTTAAT-T-TA
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * * * *
148942 CTGC-GCCA-G-CAGAGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACTA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
*
149004 AGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTG--
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *** * * *
149039 ---CTGCGATGCCAGGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTTCCACTGCAACGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * *
149101 GGGAAATGAGATTTGTTGCCTTCAGCTTTAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * *
149135 --ACTACGACGCTAGAGAAATAAGATTTGCTGCCTTCTGCTTT--TCCATTACTACGCCAAGGAA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * **
149196 ATGAGATTCGCTGCCTTCAACTTTAATCTAAT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * ** *
149228 --AC-G--ACGCCAAGGAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATGCCA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCA
* * *
149288 AGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTT
60 AGGAAAT-AAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
149325 CTACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGACGTCAGGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * * *
149390 ATAAGATTTGGTGCCTTCTGCTTTAATCTATT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * *
149422 CTACTACAACT-CCAAGGAAATAAAATTTGCTGCCTTCAACATTAATCAACTGCGACGACAGGGA
1 CCACTGCAA-TGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGA
149486 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * *
149519 CCACTGCAACACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATCTAATGCGACGCCAAGGAA
1 CCACTGCAATGCC-AAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * ** * *
149584 ATAAGATTTGCTACCTTCAATTTTAATTTGAT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * *
149616 CCACTGCAATGTCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACGCCA
1 CCACTGCAATGCCAAG-AAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * *
149681 ACGAAATAAGATTCGCTACCTTCAGCTTGAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
149715 --ACTACGATGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCGGTCCACTACAATGCCAA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC--T--ACTGCGACGCCAA
*** *
149778 GGAAATAAGATTTATTGCCTTCAGCTTTAATATGTT
61 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
149814 CCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTAACGCC-AGCG
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGC-GACGCCAAG-G
* * *
149877 AAATAAGATTTGCTGCCTTCAACTTTAATCAGTT
63 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * *
149911 CAACTACAACGCCAAGGAAATGAGATTTGCTGCCTTTAGCTTTCACCTAATGCGATGCCAAGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* *
149976 ATAAGATTTGCTGCCTTCAGCTTTAATTTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* *
150008 CCACTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCGACGCC
1 CCACTGCAATGCCAA-GAAATAAG-ATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCC
** * * * *
150072 GGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-T
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * * * *
150105 CTACTGCAACGTCAGGGAAACAAGATTTGTTGCCTTCTGCTTTTACTCTGTTCTACTGCAATGAC
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGC-TTTA-----ATCTACTGCGACGCC
** *
150170 AGAAAAAATAAGATTCACTGCCTTCAGCTTTAATCTGTT
59 A-AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * * *
150209 CTACTGAAACGCCAAGGAAATAAGATTCACCGCCTTTACCTTTAGTCTATTGCTG-TGCCAGGGA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGC-GACGCCAAGGA
** *
150273 AATAAGATTCATTGCCTTCAACTTTAATCTGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * * *
150306 CCACTACAACGGCAAGGAGATGAGATTCGCCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCA
* *
150371 AGGAAATAAGATTTGCTACCTTCAGCTTTAA--T-TT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
150405 --ACTGCGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCC
1 CCACTGCAATGCCA-AGAAATAAGA-TTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCC
* * *
150467 AAGGAAATAAGATTCTCTGCCTTCAACTTT-AGC--TT
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * *
150502 --ACTGCGACGCTAGGGATATAAGATTCACTGCCTTTAGCATTAATCTGTTCCACTGCAATGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * *
150565 AGAAAATGAGATTCGCTGCATTCAGCTTTAA-C----
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * **
150597 CTACTGCGACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTT
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* *
150662 AGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * * * *
150699 --AC-G--ACGTTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCC-
*
150759 AAGG-AATAAGATTCGCTTCCTTCAGCTTTAATC---T
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * * *
150793 --ACTGCAACACCAGGGAAATGAGATTCGCTGCCTTCAAG-TTTAATCTACTACGAC-TCTAGGT
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTACTGCGACGCCAAGG-
* *
150854 AAATAAGATTCGTTGCCTTTAGCTTTAATCTGTT
63 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
150888 CCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTACTACGATGCCAGGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* ** * *
150953 ATAAAATTTACTACATTCAGCTTTAATCTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
150985 CCACTGCAATGCCAGGGAAA-AGAGATTTGCTGTCTTCAGCTTTAATCTGCTGTGACGCTAGGGA
1 CCACTGCAATGCCA-AGAAATA-AGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGA
** * *
151049 AATAAGATTTACTACCTTCAGCTTTAATTTGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * **
151082 CCACTACAACG-CAATCGAAATAAGATTCACTGCCTTCTGTTTTAATCTACTACGACGCCGGGGA
1 CCACTGCAATGCCAA--GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGA
**
151146 AATAAGATTCATTG-CTTCAGCTTTAATCTGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
151178 CCACTGCAACGCCAGGGAAATGAGGTTTGTTGCCTTCAGCTTTAATCTACTACGACG-CTAGAGA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-GA
* *
151242 AATAAGATTTGCTGCCTTCTGC-----T-T-TT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
151268 CCACTACTACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGACGCCAAGAAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * * *
151333 ATAAGATTTGCTTCTTTCAGCTTTAATTTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
151365 CCACTGTAATGCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCT
1 CCACTGCAATGCCAA-GAAAT-AAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCC
* * * *
151429 AAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATT
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
151467 GCGAC-G---T--CAGGGAAATAAGATTTGGTGCCTT-ATGCTTGAATCTGTTCTACTACAACTC
1 -CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCA-GCTTTAA-----TCTACTGCGACGC
* * * *
151525 CAAGGAAATAAAATTTGTTGCCTTCAACTTTAA-----T
58 CAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
151559 CAACTGCGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * *
151624 AAGAAATGAGATTTGCTACCTTCAGCTTTAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
151658 --AATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAATTTTAATTTGATCCACTGCAATGCCA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTT-A----ATCTACTGCGACGCCA
* ** * *
151721 AGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
** * * * * * *
151758 CCACTGCAACACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATCTAATGCAATGCCAAGGAA
1 CCACTGCAATGCC-AAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * *
151823 ATAAGATTTGCTGCCTTCAACTTTAATCAGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * *** * * *
151855 CAACTGCAACGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTT-A-A---TCTACTGCGACGCCA
* * *
151920 AGGAAATAAGATTCACTGCCTTAAGGTTTAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
151954 ACTCTG--ACGCTAGTGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
*** *
152017 AGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
152054 CCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGACGGCAACGA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGC-GACGCCAAGGA
* * * * *
152118 AATAAGATTTGTTGTCTTCAACTTTAATCAGTT
64 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * *
152151 CAACTGCAATGCCAAGGAAATGAGATTTGCTGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * *
152216 ATAAGATTTGCTCCCTTCAGCTTTAATTTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * *
152248 CCTCTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGCC
1 CCACTGCAATGCCAA-GAAATAAG-ATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCC
** * * * *
152312 GGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-T
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * ** * * *
152345 CTACTGCGATGTTAGGGAAATAAGATTTGCTGCCTTCAATTTTAATTTGATCCACTGCAATGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTT-A----ATCTACTGCGACGCCA
* ** * *
152410 AGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
152447 CCACTGCAACGCCAACGAAAAAAGATTCGCTACCTTCAGCTTGAATATACTGCGATGACAGGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
152512 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *** * * * *
152544 CTACTACAATGTCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTACAACGCTA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTT-A-A---TCTACTGCGACGCCA
* * *
152609 AGGAAATAAGATTCACTGCCTTAAGGTTTAATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * *
152643 ACTCTG--ACGGCAACGAAATAAGATTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * *
152706 AGGAAATGAGATTTGCTGCCTTCAGCCTTCATC---T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * ** * *
152740 --AATGCGATGCCAAGGAAATAAGATTTGCACCCTTCAGCTTTAATTTGTTCCT-CTGCAATGCC
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAA-----T-CTACTGCGACGCC
* * *
152802 AAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTATT
59 AAGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * * * * * *
152840 CCACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAA
1 CCACTGCAATGCC-AAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * * *
152905 ATAAGATTTGTTGCCTTCTGCTTTACTCTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * **
152937 CTACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCA
* * * *
153002 AGGAAATAAGATTCACCGTCTTTAGCTTT-A---G-T
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * ** * * *
153034 CTATTGCGGTGCCAGGGAAATAAGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACAG-
1 CCACTGCAATGCCA-AGAAATAAGATTCGC-TGCCTTCAGCTTTAATC---T--ACTGCGAC-GC
* * *
153097 CAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTT
58 CAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * *
153136 CCACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTGTGACGACATGGAA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * * *
153201 ATAA-AGTTTGCTACCTTCAGTTTTATTCTGTT
65 ATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * *
153233 CCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCA
1 CCACTGCAATGCCAA-GAAATAAGATTCGCTGCCTTCAGCTTT-A-A---TCTACTGCGACGCCA
* * * *
153298 AGGAAATAAGATTCTCTGCCTTTAACTTT-AGC--TT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * ** *
153332 --ACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGTTAATCTGTTCCACTGTAATGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* * * *
153395 AGAAAATGAGATTCGCTGCATTAAGCTTTAA-C----
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * * * * * * * **
153427 CTACTGCGACGCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTT
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCA
* *
153492 AGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT
60 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * * * * *
153529 --A---CAACGTTAGGGAAATGAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCC-
*
153589 AAGG-AATAAGATTCGCTGCTTTCAGCTTTAATCTGTT
59 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* ** * * * * * * *
153626 CCACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAA
1 CCACTGCAATGCC-AAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAA
* * * *
153691 ATAAGATTTGTTGCCTTCTGCTTTACTCTGTT
65 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTT
* * * *
153723 CTACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTA
1 CCACTGCAATGCCA-AGAAATAAGATTCGCTGCCTTCAGCTTTAATCTA
153772 AGATTTACTT
Statistics
Matches: 5121, Mismatches: 1184, Indels: 738
0.73 0.17 0.10
Matches are distributed among these distances:
89 1 0.00
90 141 0.03
91 10 0.00
92 83 0.02
93 7 0.00
94 6 0.00
95 27 0.01
96 272 0.05
97 3717 0.73
98 92 0.02
99 52 0.01
100 23 0.00
101 55 0.01
102 591 0.12
103 15 0.00
104 29 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (96 bp):
CCACTGCAATGCCAAGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGAAA
TAAGATTCGCTGCCTTCAGCTTTAATCTGTT
Found at i:147135 original size:51 final size:48
Alignment explanation
Indices: 147059--147336 Score: 164
Period size: 51 Copynumber: 5.7 Consensus size: 48
147049 ACTGCGACGC
*
147059 CAAGGAAATAAGATTCGCTGCCTTCAGCTTTAAACTGTTCCACTGTATTG
1 CAAGGAAATAAGATTCACTGCCTTCAGCTTTAAACTGTTCCACTG-A-TG
* * *
147109 CCCA-GAAAGTAAGATTCACTGCCTTCAACTTT-AA-T-TTACTAC-GATG
1 -CAAGGAAA-TAAGATTCACTGCCTTCAGCTTTAAACTGTT-CCACTGATG
* *
147155 CAAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACG
1 CAA-GGAAATAAGATTCACTGCCTTCAGCTTTAAACTGTTCCACTG--ATG
* * * * *
147206 CCATGGAAATAACATTCTCCGCCTTCAGCTTT--A--G-TCTACTGCGATG
1 -CAAGGAAATAAGATTCACTGCCTTCAGCTTTAAACTGTTCCACT--GATG
* * *
147252 CTAGGGAAATAAGATTCGCTGCCTTCAG-TGTTAATCTGTTCCACTGCAATG
1 C-AAGGAAATAAGATTCACTGCCTTCAGCT-TTAAACTGTTCCACTG--ATG
** * * *
147303 CCAAGGAAATGTGATTCGCTGCCTTTAGTTTTAA
1 -CAAGGAAATAAGATTCACTGCCTTCAGCTTTAA
147337 TCTACTAAGA
Statistics
Matches: 177, Mismatches: 26, Indels: 48
0.71 0.10 0.19
Matches are distributed among these distances:
45 4 0.02
46 55 0.31
47 7 0.04
48 8 0.05
49 8 0.05
50 7 0.04
51 84 0.47
52 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (48 bp):
CAAGGAAATAAGATTCACTGCCTTCAGCTTTAAACTGTTCCACTGATG
Found at i:147274 original size:143 final size:142
Alignment explanation
Indices: 147003--152731 Score: 988
Period size: 148 Copynumber: 39.3 Consensus size: 142
146993 AAACCATCCC
* * *
147003 ACTGCAACGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAAG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * *
147063 GAAATAAGATTCGCTGCCTTCAGCTTTAAACTGTTCCACTG-TATTGCCCA--GAAAGTAAGATT
65 GAAATAAGATTCTCTGCCTTCAACTTT-AA----TCTACTGCGA-AG-CTAGGGAAA-TAAGATT
*
147125 CACTGCCTTCAACTTTAATTT
122 CACTGCCTTCAACTTTAATCT
* * * *
147146 ACTACGATG-CAAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAT
1 ACTGCGACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAA
* * * * * *
147210 GGAAATAACATTCTCCGCCTTCAGCTTTAGTCTACTGCGATGCTAGGGAAATAAGATTCGCTGCC
64 GGAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCC
*
147275 TTC-AGTGTTAATCTGTT
129 TTCAACT-TTAATC---T
* * ** * * * *
147292 CCACTGCAATGCCAAGGAAATGTGATTCGCTGCCTTTAGTTTTAATC---T--ACTAAGACGAC-
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCA-ACGCCA
* * * * ** * *
147351 AGAGAAATAATATT-TGTTGGCTTCAACTTTAATTTGTTCTACTGCAAAATTAAGAAAATAAGAT
63 AG-GAAATAAGATTCT-CTGCCTTCAACTTTAA-----TCTACTGCGAAGCTAGGGAAATAAGAT
** * * *
147415 TCGTTTCCTTTAGCTTTAATCT
121 TCACTGCCTTCAACTTTAATCT
* * * *
147437 ACTGCGACGTCAATGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAATGCCAAA
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * *
147502 GAAATGAGATTCACTGCCTTCAACTTTAATCTACTGTGAAGCCAGAGAAATAAGATTCACCGCTT
65 GAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCCT
147567 TCAACTTTAATCT
130 TCAACTTTAATCT
* * *
147580 ACTGCGACGCC-AGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACTCGAATGCCAA
1 ACTGCGACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTC-AACGCCAA
* * * * * * * *
147644 GAAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACG-TCAGGAAAATAAGATT-ACTTC
64 GGAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCT-AGGGAAATAAGATTCACTGC
* * *
147707 TTTCAGCTTTAATATGTTCC
128 CTTCAACTTT-A-A---TCT
* * * * * * ** * * * *
147727 AGTGCAACGCCAGGGAAATGAGATTCGATGCCTTTAAATTTAATCTAG----A-GCGACGCTAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTCAACGCCAAG
* * * * * *
147787 GAAAAAAG-TT-TGCTGCCGTCAGCTTTAATTTCTTCCACTGC-AATGCAATGGAAATGAGATTC
65 GAAATAAGATTCT-CTGCCTTCAACTTTAA--TC-T--ACTGCGAA-GCTAGGGAAATAAGATTC
* * *
147849 GCTGCCTTTAGCTTTAATCTATT
123 ACTGCCTTCAACTTTAATC---T
* ** * * * *
147872 CCACTGCAACGGAAATGAAATAAGATTCACTGCCTTCAGCTTTAATC---T--ACTGCGATGCCA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * * * *
147932 GGGAAATAAGATTCGCTGCCTTCAACTTTAATCTATTCCACTGC-AACACCAAGGAAATAAGATT
63 AGGAAATAAGATTCTCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGATT
** * * * *
147996 TGCTACGTGCAGCTTTAATCT
122 CACTGCCTTCAACTTTAATCT
* * * ** * * * * *
148017 ACTGCGATGCCAGGGAAATAAAATTTACTGCCTTTAACTTTAATTTGTTCCACTGCAATGCCAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * ***
148082 GAAATGATATT-TCCTGCCTTTAGCTTTAATCTACTGCGACGCTAGAGAAATAAGATTTGTTGCC
65 GAAATAAGATTCT-CTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCC
* *
148146 TCCTACTTTAATCTGTT
129 TTCAACTTTAATC---T
* * * * * * * ** * * **
148163 CCACTGCAACACTAAGGAAATGAGATTTGCTACCTTTAGCTTTAATCTAAT---GT-GACGTTAA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCAA
* * * * * * **
148224 GGAAATAAGATT-TGTTGCCTTCAGCTTTAATTTGTTCCACTAC-AACGCCAAGGAAAGGAGATT
64 GGAAATAAGATTCT-CTGCCTTCAACTTTAA-----TCTACTGCGAA-GCTAGGGAAATAAGATT
* * * *
148287 CGCTGTCATCAGCTTTAATCTGTT
122 CACTGCCTTCAACTTTAATC---T
* * * * * * * *
148311 CCACTGCAACGCCAGGGAAATAAGATTCACTGGCTTTATCTTT-A---G-TCTACTGCGACGCCA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * ** * * * * * * *
148371 GGGAAATAAGGTT-TGCTGCCTTCAGTTTTAATCTGTTCCGCTGCAATACCAAGGAGATGAGATT
63 AGGAAATAAGATTCT-CTGCCTTCAACTTTAATC--TACTGC-G-AA-GCTAGGGAAATAAGATT
** * *
148435 CGTTACCTTCAGCTTTAATCT
122 CACTGCCTTCAACTTTAATCT
* * * ** * * * * *
148456 ACTGCGACGCTAGGGAAATAATATTTACTACCTTCAGCTTTATTCTGTTCCACTACAATGCTAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * ** * *** *
148521 GAAATGAA-ATT-TGTTGCCTCCTGCTTTAATCTACTGCGACGCTAGGGAAATAAGATTTGTTAC
65 GAAAT-AAGATTCT-CTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGC
** *
148584 CGCCAGCTTTAATCTGTT
128 CTTCAACTTTAATC---T
** ** * * * * * *
148602 CCACTGCGACTACAAAAAAATGAGATTCTCTGGCTTCAGCTTTAA-C----CTACTGCGACGCTA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * ** * * *
148662 GGGAAATAAGATTCACTGCCTTCTGCTTTAATCTATTCCACTAC-AACGCTAAGGAAATAAGACT
63 AGGAAATAAGATTCTCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGATT
* *
148726 CGCTGCCTTCATCTTTAATCT
122 CACTGCCTTCAACTTTAATCT
* * * * * * * * *
148747 ACTGCGATGCCAGGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATTCTACTGCAATGCAAAT
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * ***
148812 GAAATGAGATTCACTGCCTTCAACTTGAATCTACTGCGACGCCAGGGAAATAAGATTTGTTGCCT
65 GAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCCT
*
148877 TTAACTTTAATCTGTT
130 TCAACTTTAATC---T
* * * * *
148893 CCACTACAACGCCAAGGAAATAAGATTCACTTCCTTCAGCTTTAA--T-TT--ACT--GCGCCAG
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCA-
* * * * * * *
148951 CAGAGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGC-AACACTAAGGAAATGAGA
63 -AG-GAAATAAGATTCTCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGA
* *
149015 TTCGCTGCCTTCAGCTTTAATCT
120 TTCACTGCCTTCAACTTTAATCT
* * * *** * * *
149038 GCTGCGATGCCAGGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTTCCACTGCAACGCCAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * **
149103 GAAATGAGATT-TGTTGCCTTCAGCTTTAATCTACTACGACGCTAGAGAAATAAGATTTGCTGCC
65 GAAATAAGATTCT-CTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCC
** *
149167 TTCTGCTTT--TCC
129 TTCAACTTTAATCT
* * * * * ** *
149179 ATTACTACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAAT--A--CGACGCCAAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCAAGG
* * * * * * * *
149240 AAATAAGATT-TGCTTCTTTCAGCTTTAATTTGTTCCACTG-TAATGCCAAGGAAATGTA-ATTC
66 AAATAAGATTCT-CTGCCTTCAACTTTAA-----TCTACTGCGAA-GCTAGGGAAAT-AAGATTC
* * * *
149302 GCTGTCGTCAGCTTTAATCTGTTCT
123 ACTGCCTTCAACTTTAA-----TCT
* * * * * * * * * * *
149327 ACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATT----GCGACGTCAGGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCAAGG
* ** * * * * * **
149388 AAATAAGATT-TGGTGCCTTCTGCTTTAATCTATTCTACTACAACTCCAAGGAAATAAAATTTGC
66 AAATAAGATTCT-CTGCCTTCAACTTTAATCTA--CTGCGA-AGCT--AGGGAAATAAGATTCAC
* *
149452 TGCCTTCAACATTAATCA
125 TGCCTTCAACTTTAATCT
* * * *
149470 ACTGCGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAA
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * * ** *
149535 GAAATGAGATT-TGCTACCTTCAGCTTTAATCTAATGCGACGCCAAGGAAATAAGATTTGCTACC
65 GAAATAAGATTCT-CTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCC
* *
149599 TTCAATTTTAATTTGATCC
129 TTCAACTTT-A----ATCT
* * * * ** * * *
149618 ACTGCAATGTCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACGCCAAC
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * *
149683 GAAATAAGATTCGCTACCTTCAGCTTGAATCTACTACGATGAC-AGGGAAATAAGATTCGCTGCC
65 GAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAG-CTAGGGAAATAAGATTCACTGCC
*
149747 TTCAGCTTTAATCGGT
129 TTCAACTTTAATC--T
* * * *** * *
149763 CCACTACAATGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * * * * **
149828 AGGAAATAAGATTCACTGCCTT-AAGGTTTAATCTACT-CTAACGCCAGCGAAATAAGATTTGCT
63 AGGAAATAAGATTCTCTGCCTTCAA-CTTTAATCTACTGCGAA-GCTAGGGAAATAAGATTCACT
149891 GCCTTCAACTTTAATCAGTT
126 GCCTTCAACTTTAATC---T
* * * * * * * * * *
149911 CAACTACAACGCCAAGGAAATGAGATTTGCTGCCTTTAGCTTTCA-C----CTAATGCGATGCCA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * * * *
149971 AGGAAATAAGATT-TGCTGCCTTCAGCTTTAATTTGTTCCACTGC-AATGCCAAGGAAAT-GGAA
63 AGGAAATAAGATTCT-CTGCCTTCAACTTTAA-----TCTACTGCGAA-GCTAGGGAAATAAG-A
* * *
150033 TTCGCTGCTTTCAGCTTTAATCTGTT
120 TTCACTGCCTTCAACTTTAATC---T
** * * * * * *
150059 CCACTGCGACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-TCTACTGCAACGTCA
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * * ** * **
150119 GGGAAACAAGATT-TGTTGCCTTCTGCTTTTACTCTGTTCTACTGC-AATGAC-AGAAAAAATAA
63 AGGAAATAAGATTCT-CTGCCTTCAAC-TTTA-----ATCTACTGCGAA-G-CTAG-GGAAATAA
*
150181 GATTCACTGCCTTCAGCTTTAATCTGTTCT
118 GATTCACTGCCTTCAACTTTAA-----TCT
** * * * * * * * ** *
150211 ACTGAAACGCCAAGGAAATAAGATTCACCGCCTTTACCTTTAGTCTATT--GCT--GTGCCAGGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCAAGG
* * * *
150272 AAATAAGATTCAT-TGCCTTCAACTTTAATCTGTTCCACTAC-AACGGC-AAGGAGATGAGATTC
66 AAATAAGATTC-TCTGCCTTCAACTTTAATC---T--ACTGCGAA--GCTAGGGAAATAAGATTC
* * * *
150334 GCCGCCTTCAGCTTTAACCTGTTCC
123 ACTGCCTTCAACTTTAA-----TCT
* * * * * * * * *
150359 ATTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAA--T-TT--ACTGCGACGACATG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * ** * *
150419 GAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGC-AACGCCAAGGAAATAAGATTC
65 GAAATAAGA-TTCTCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGATTC
* *
150482 TCTGCCTTCAACTTT-AGCTT
123 ACTGCCTTCAACTTTAATC-T
* * * * * * *
150502 ACTGCGACGCTAGGGATATAAGATTCACTGCCTTTAGCATTAATCTGTTCCACTGCAATGCCAAG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * * * *
150567 AAAATGAGATTCGCTGCATTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGGCT
65 GAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCCT
**
150632 TCAGGTTTAATCTGTT
130 TCAACTTTAATC---T
* ** * * * ** *
150648 CCACTGCAACGCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT--A--CGACGTTAG
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCAA
* * * * * * * *
150709 GGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGG-AATAAGATTC
64 GGAAATAAGATTCTCTGCCTTCAACTTTAA-----TCTACTGCGAAG-CTAGGGAAATAAGATTC
* * *
150773 GCTTCCTTCAGCTTTAATCT
123 ACTGCCTTCAACTTTAATCT
* * * * *
150793 ACTGCAACACCAGGGAAATGAGATTCGCTGCCTTCAAG-TTTAATC---T--ACT--ACGACTCT
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTCAACG-C-CA
* * *
150850 AGGTAAATAAGATTCGT-TGCCTTTAGCTTTAATCTGTTCCACTGC-AACGCTAAGGAAATAAGA
63 AGG-AAATAAGATTC-TCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGA
* *
150913 TTCACCGCCTTCAGCTTTAATCT
120 TTCACTGCCTTCAACTTTAATCT
* * * * ** * * * *
150936 ACTACGATGCCAGGGAAATAAAATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * *
151001 GAAA-AGAGATT-TGCTGTCTTCAGCTTTAATCTGCTGTGACGCTAGGGAAATAAGATTTACTAC
65 GAAATA-AGATTCT-CTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGC
* *
151064 CTTCAGCTTTAATTTGTTCC
128 CTTCAACTTTAA-----TCT
* * * * * * * **
151084 ACTACAACG-CAATCGAAATAAGATTCACTGCCTTCTGTTTTAATC---T--ACTACGACGCCGG
1 ACTGCGACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAA
* * * *
151143 GGAAATAAGATTCAT-TG-CTTCAGCTTTAATCTGTTCCACTGC-AACGCCAGGGAAATGAGGTT
64 GGAAATAAGATTC-TCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGATT
*** *
151205 TGTTGCCTTCAGCTTTAATCT
122 CACTGCCTTCAACTTTAATCT
* * * * *
151226 ACTACGACG-CTAGAGAAATAAGATTTGCTGCCTTCTGC-----T-T-TTCCACTACTACGCCAA
1 ACTGCGACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAA
* * * * * * * * * ** * *
151283 GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGACGCCAAGAAAATAAGATTTGCTTCT
64 GGAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCC
* *
151348 TTCAGCTTTAATTTGTTCC
129 TTCAACTTTAA-----TCT
** * * * * * * *
151367 ACTGTAATGCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCTAA
1 ACTGCGACGCCAAGGAAAT-AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAA
* * * * * * * ***
151431 GGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGACG-TCAGGGAAATAAGATTTGGTGC
64 GGAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCT-AGGGAAATAAGATTCACTGC
* *
151495 CTT-ATGCTTGAATCTGTTCT
128 CTTCA-ACTTTAA-----TCT
* * * * * * * * * * *
151515 ACTACAACTCCAAGGAAATAAAATTTGTTGCCTTCAACTTTAA-----TCAACTGCGACGACAGG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * ** * **
151575 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGC-AACACCAAAGAAATGAGATTTG
65 GAAATAAGATTCTCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGATTCA
* *
151639 CTACCTTCAGCTTTAATCT
124 CTGCCTTCAACTTTAATCT
* * * * ** * * *
151658 AATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAATTTTAATTTGATCCACTGCAATGCCAAG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* ** * * * * * * ** * **
151723 AAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGC-AACACCAAAGAAATGAGATTTG
65 GAAATAAGATTCTCTGCCTTCAACTTTAATC---T--ACTGCGAA-GCTAGGGAAATAAGATTCA
* *
151787 CTACCTTCAGCTTTAATCT
124 CTGCCTTCAACTTTAATCT
* * * * * * *
151806 AATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * *
151871 GAAATAAGATT-TATTGCCTTCAGCTTTAATATGTTCCACTGC-AACGCTAAGGAAATAAGATTC
65 GAAATAAGATTCT-CTGCCTTCAACTTT-A-A---TCTACTGCGAA-GCTAGGGAAATAAGATTC
*
151934 ACTGCCTT-AAGGTTTAATCT
123 ACTGCCTTCAA-CTTTAATCT
* * * * *
151954 ACT-CTGACG-CTAGTGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCA
1 ACTGC-GACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCA
* * * *
152017 AGGAAATAAGATT-TATTGCCTTCAGCTTTAATATGTTCCACTGC-AACGCTAAGGAAATAAGAT
63 AGGAAATAAGATTCT-CTGCCTTCAACTTT-A-A---TCTACTGCGAA-GCTAGGGAAATAAGAT
*
152080 TCACTGCCTT-AAGGTTTAATCT
121 TCACTGCCTTCAA-CTTTAATCT
* * * * * * * * *
152102 ACT-CTGACGGCAACGAAATAAGATTTGTTGTCTTCAACTTTAATCAGTTCAACTGCAATGCCAA
1 ACTGC-GACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAA
* * * * * * * ** *
152166 GGAAATGAGATT-TGCTGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCTCC
64 GGAAATAAGATTCT-CTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGC
*
152230 CTTCAGCTTTAATTTGTTCCT
128 CTTCAACTTTAA-----T-CT
* * * * * * **
152251 -CTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGCCGG
1 ACTGCGACGCCAAGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAA
* * * * * * * **
152314 GGAAATAAGAGTCGT-TGGCTTTAGCTTTAGTCTACTGCGATGTTAGGGAAATAAGATTTGCTGC
64 GGAAATAAGATTC-TCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGC
* *
152378 CTTCAATTTTAATTTGATCC
128 CTTCAACTTT-A----ATCT
* * * ** * * *
152398 ACTGCAATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACGCCAAC
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * * * * * *
152463 GAAAAAAGATTCGCTACCTTCAGCTTGAATATACTGCGATGAC-AGGGAAATAAGATTCGCTGCC
65 GAAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAG-CTAGGGAAATAAGATTCACTGCC
*
152527 TTCAGCTTTAATCTGTTCT
129 TTCAACTTTAA-----TCT
* * * * *** * *
152546 ACTACAATGTCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTACAACGCTAAG
1 ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-CAACGCCAAG
* * * ** **
152611 GAAATAAGATTCACTGCCTT-AAGGTTTAATCTACT-CTGACGGC-AACGAAATAAGATTTGCTG
65 GAAATAAGATTCTCTGCCTTCAA-CTTTAATCTACTGC-GA-AGCTAGGGAAATAAGATTCACTG
*
152673 TCTTCAACTTTAATCAGTT
127 CCTTCAACTTTAATC---T
* * *
152692 CAACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGC
1 --ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGC
152732 CTTCATCTAA
Statistics
Matches: 4233, Mismatches: 983, Indels: 735
0.71 0.17 0.12
Matches are distributed among these distances:
136 64 0.02
137 2 0.00
138 4 0.00
139 1 0.00
140 33 0.01
141 121 0.03
142 103 0.02
143 1124 0.27
144 26 0.01
145 33 0.01
146 59 0.01
147 275 0.06
148 2230 0.53
149 58 0.01
150 82 0.02
151 8 0.00
152 2 0.00
153 5 0.00
155 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (142 bp):
ACTGCGACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTCAACGCCAAGG
AAATAAGATTCTCTGCCTTCAACTTTAATCTACTGCGAAGCTAGGGAAATAAGATTCACTGCCTT
CAACTTTAATCT
Found at i:147360 original size:194 final size:192
Alignment explanation
Indices: 147001--156660 Score: 1008
Period size: 194 Copynumber: 49.8 Consensus size: 192
146991 TCAAACCATC
*
147001 CCACTGCAACGCCAAGGAAATAAGATT-TGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* * * *
147065 AATAAGATTCGCTGCCTTCAGCTTTAAACTGTTCCACTGTATTGCCCAGAAA-GTAAGATTCACT
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAGAAATGT--GATTCACT
* * * * *
147129 GCCTTCAACTTTAATTTACTACGATGCAAGGGAAATAAGATTCACTGCCTTCAGCTTTAATCTGT
128 GCCTTCAACTTTAATCTACTAAGAAGC-AGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGT
147194 T
192 T
* * * * * *
147195 CCACTGCAACGCCATGGAAATAACATTCTCCGCCTTCAGCTTTAGTCTACTGCGATGCTAGGGAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGAA
*
147260 ATAAGATTCGCTGCCTTCAG-TGTTAATCTGTTCCACTGCAATGCCAAGGAAATGTGATTCGCTG
66 ATAAGATTCGCTGCCTTCAGCT-TTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACTG
* ** * * *** * *
147324 CCTTTAGTTTTAATCTACTAAGACGACAGAGAAATAATATTTGTTGGCTTCAACTTTAATTTGTT
129 CCTTCAACTTTAATCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGTT
* **** * * * *
147389 CTACTGCAAAATTAAGAAAATAAGATTCGT-TTCCTTTAGCTTTAATCTACTGCGACG-TCAATG
1 CCACTGCAACGCCAAGGAAATAAGATTC-TCTGCCTTCAGCTTTAATCTACTGCGACGCT-AAGG
* *
147452 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAATGCCAAAGAAATGAGATTCACT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCC-AAGAAATGTGATTCACT
** * *
147517 GCCTTCAACTTTAATCTACTGTGAAGCCAGAGAAATAAGATTCACCGCTTTCAACTTTAATC---
128 GCCTTCAACTTTAATCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGT
147579 T
192 T
* * * * *
147580 --ACTGCGACGCC-AGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACT-CGAATGC
1 CCACTGCAACGCCAAGG-AAATAAGATTCTCTGCCTTCAGCTTTAATC---T--ACTGCG-ACGC
* * * ** * * * **
147641 CAAGAAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGTGACGTCAGGAAAATAAGAT
59 TAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAG-AAATGTGAT
* * * * * * * * * *
147701 T-ACTTCTTTCAGCTTTAATATGTTCCAGTGCAACGCCAGGGAAATGAGATTCGA-TGCCTTTAA
123 TCACTGCCTTCAACTTT-A-ATCTACTA-AG-AA-G-CAGAGAAATAAGATTC-ACTGCCTTCAA
*
147764 ATTTAATCTAG--
181 CTTTAATCT-GTT
* * * * * * *
147775 --A--GCGACGCTAGGGAAAAAAG-TT-TGCTGCCGTCAGCTTTAATTTCTTCCACTGCAATGC-
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAA--TC-T--ACTGCGACGCT
* * * * ** **
147833 AATGGAAATGAGATTCGCTGCCTTTAGCTTTAATCTATTCCACTGCAACGGAAATGAAATAAGAT
60 AA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGAT
* ** * * *
147898 TCACTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCTGCCTTCAACTTTAA
123 TCACTGCCTTCAACTTTAATCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAA
*
147963 TCTATT
187 TCTGTT
* * * * * * *
147969 CCACTGCAACACCAAGGAAATAAGATT-TGCTACGTGCAGCTTTAATCTACTGCGATGCCAGGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* ** * * * *
148033 AATAAAATTTACTGCCTTTAACTTTAATTTGTTCCACTGCAATGCCAGGGAAATGAT-ATTTC-C
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATG-TGA-TTCAC
* * ** * *** * *
148096 TGCCTTTAGCTTTAATCTACTGCGACGCTAGAGAAATAAGATTTGTTGCCTCCTACTTTAATCTG
127 TGCCTTCAACTTTAATCTACTAAGAAGC-AGAGAAATAAGATTCACTGCCTTCAACTTTAATCTG
148161 TT
191 TT
* * * * * * * *
148163 CCACTGCAACACTAAGGAAATGAGATT-TGCTACCTTTAGCTTTAATCTAATGTGACGTTAAGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* * * * * * * *
148227 AATAAGATTTGTTGCCTTCAGCTTTAATTTGTTCCACTACAACGCCAAGGAAAGGAGATTCGCTG
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACTG
* * * * * * * * * *
148292 TCATCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGGCTTTATCTTT-A-
129 CCTTCAACTTTAATC--TACTA-AG-AA-G-CAGAGAAATAAGATTCACTGCCTTCAACTTTAAT
148355 --G-T
188 CTGTT
* * * * * ** *
148357 CTACTGCGACGCCAGGGAAATAAGGTT-TGCTGCCTTCAGTTTTAATCTGTTCCG-CTGCAATAC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGAC-GC--T--
* * * * * * * * *
148420 CAAGGAGATGAGATTCGTTACCTTCAGCTTTAATC---T--ACTGCGACGCTAGGGAAATAAT-A
60 -AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAAT-GTGA
* * * * * * *** *
148479 TTTACTACCTTCAGCTTTATTCTGTTCCACTACA-ATGCTAGGGAAATGAA-ATTTGTTGCCTCC
122 TTCACTGCCTTCAACTTTAATC---T--ACTA-AGAAGC-AGAGAAAT-AAGATTCACTGCCTTC
**
148542 TGCTTTAATC---T
179 AACTTTAATCTGTT
* * * * * ** *
148553 --ACTGCGACGCTAGGGAAATAAGATT-TGTTACCGCCAGCTTTAATCTGTTCCACTGCGACTAC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATC---T--ACTGCGAC-GC
** * * * * * * * * **
148615 -AAAAAAATGAGATTCTCTGGCTTCAGCTTTAA-C----CTACTGCGACGCTAGGGAAATAAGAT
59 TAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGAT
** * * * * *
148674 TCACTGCCTTCTGCTTTAATCTATTCCACTACAACGCTA-AGGAAATAAGACTCGCTGCCTTCAT
123 TCACTGCCTTCAACTTTAATCTA--CTA--AGAA-GC-AGA-GAAATAAGATTCACTGCCTTCAA
148738 CTTTAATC---T
181 CTTTAATCTGTT
* * * * * * *
148747 --ACTGCGATGCCAGGGAAATAAGATT-TGCTGCATTCAGCTTTAATCTATTCTACTGCAATGCA
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTT-A---A-TCTACTGCGACGCT
* * * * * * * * **
148809 AATGAAATGAGATTCACTGCCTTCAACTTGAATC---T--ACTGCGACGCCAGGGAAATAAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATT
*** * * * *
148869 TGTTGCCTTTAACTTTAATCTGTTCCACTACA-ACGCCA-AGGAAATAAGATTCACTTCCTTCAG
124 CACTGCCTTCAACTTTAATC---T--ACTA-AGAAG-CAGA-GAAATAAGATTCACTGCCTTCAA
148932 CTTTAA--T-TT
181 CTTTAATCTGTT
* * * * *
148941 --ACTG---CGCCAGCAGAGAAATAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACA
1 CCACTGCAACGCCA--AG-GAAATAAGATTCTCTGCCTTCAGCTTTAATC---T--ACTGCGACG
* * * **
149001 CTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTG-----CTGCGATGCCAGGGAAATAAGA
58 CTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGA
* * * * * * * * *** *
149061 TTTATTGGCTTCAACTTTAATCTGTTCCACTGCAACGCCAGGGAAATGAGATTTGTTGCCTTCAG
122 TTCACTGCCTTCAACTTTAATC--TACTA-AG-AA-G-CAGAGAAATAAGATTCACTGCCTTCAA
149126 CTTTAATC---T
181 CTTTAATCTGTT
* * * * * * * * *
149135 --ACTACGACG-CTAGAGAAATAAGATT-TGCTGCCTTCTGCTTT--TCCATTACTACGCCAAGG
1 CCACTGCAACGCCAAG-GAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGG
* * ** * ** **
149194 AAATGAGATTCGCTGCCTTCAACTTTAATCTAAT--AC-G--ACGCCAAGGAAATAAGATTTGCT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACT
* * * * * * * * * * * *
149254 TCTTTCAGCTTTAATTTGTTCCACTGTAATGCCA-AGGAAATGTA-ATTCGCTGTCGTCAGCTTT
128 GCCTTCAACTTTAA--TCTACTA-AG-AA-G-CAGA-GAAAT-AAGATTCACTGCCTTCAACTTT
149317 AATCTGTT
185 AATCTGTT
* * * * * * * * *
149325 CTACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGACG-TCAGGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCT-AAGGA
* * * * * * *** **
149389 AATAAGATTTGGTGCCTTCTGCTTTAATCTATTCTACTACAACT-CCAAGGAAATAAAATTTGCT
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA-TGCCAA-GAAATGTGATTCACT
* * ** * * * *
149453 GCCTTCAACATTAATCAACTGCGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGT
128 GCCTTCAACTTTAATCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGT
149518 T
192 T
* * * * * *
149519 CCACTGCAACACCAAAGAAATGAGATT-TGCTACCTTCAGCTTTAATCTAATGCGACGCCAAGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* * ** * * * * *
149583 AATAAGATTTGCTACCTTCAATTTTAATTTGATCCACTGCAATGTCAAGAAAATGGGATTCGCTG
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAG-AAATGTGATTCACTG
* * * * * * * * * *
149648 CCGTCAGCTATAATCTGTTCCACTGCAACGCCA-ACGAAATAAGATTCGCTACCTTCAGCTTGAA
129 CCTTCAACTTTAATC--TACTA-AG-AA-G-CAGA-GAAATAAGATTCACTGCCTTCAACTTTAA
149712 TC---T
187 TCTGTT
* * * * * * * * * *
149715 --ACTACGATGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCGGTCCACTACAATGCCAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATC--T--ACTGCGACGCTAA
*** * * * **
149778 GGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCA
62 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCA
* * * * **
149843 CTGCCTT-AAGGTTTAATCTACTCTA-ACGCCAGCGAAATAAGATTTGCTGCCTTCAACTTTAAT
126 CTGCCTTCAA-CTTTAATCTACT-AAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAAT
*
149906 CAGTT
188 CTGTT
* * * * * * * * *
149911 CAACTACAACGCCAAGGAAATGAGATT-TGCTGCCTTTAGCTTTCACCTAATGCGATGCCAAGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* * *
149975 AATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAATG-GAATTCGCT
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTG-ATTCACT
* * ** * * * * ** * * *
150039 GCTTTCAGCTTTAATCTGTTCCACTGCGACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A
128 GCCTTCAACTTTAATC---T--ACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAA
150103 ---G-T
187 TCTGTT
* * * * * * * *
150105 CTACTGCAACGTCAGGGAAACAAGATT-TGTTGCCTTCTGCTTTTA-CT-CTGTTCTACTGCAAT
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTG--CGAC-GC--T
* * * * * **
150167 GACAGAAAAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAATAA
60 -A-AG--GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGT
* * * * * ** * * *
150232 GATTCACCGCCTTTACCTTTAGTCTATTGCTG-TGCCAGGGAAATAAGATTCATTGCCTTCAACT
120 GATTCACTGCCTTCAACTTTAATCTACT-AAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACT
150296 TTAATCTGTT
183 TTAATCTGTT
* * * * * * * * * *
150306 CCACTACAACGGCAAGGAGATGAGATTCGCCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAA-----TCTACTGCGACGCTA
* * * * * * **
150371 AGGAAATAAGATTTGCTACCTTCAGCTTTAA--T-TT--ACTGCGACGACATGGAAAT-AAAGTT
61 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGA-TT
* * ** * * * *
150430 CGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCCA-AGGAAATAAGATTCTCTGCCTTCAAC
124 CACTGCCTTCAACTTTAATC--TACTA-AG-AA-G-CAGA-GAAATAAGATTCACTGCCTTCAAC
*
150494 TTT-AGC--TT
182 TTTAATCTGTT
* * * * * * * * * *
150502 --ACTGCGACGCTAGGGATATAAGATTCACTGCCTTTAGCATTAATCTGTTCCACTGCAATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATC---T--ACTGCGACGCTA
* * * * * * * **
150565 AGAAAATGAGATTCGCTGCATTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATAAGATTC
61 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTC
* ** * * * *
150625 ACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTAG-GAAATAAGATTCGA-TGCCTTCAGC
125 ACTGCCTTCAACTTTAATC--TACTA-AG-AA-GC--AGAGAAATAAGATTC-ACTGCCTTCAAC
*
150688 TTTAATCTATT
182 TTTAATCTGTT
** * * * * * * *
150699 --AC-G--ACGTTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAA-----TCTACTGCGACG-CT
* ** * *
150759 AAGG-AATAAGATTCGCTTCCTTCAGCTTTAATC---T--ACTGCAACACCAGGGAAATGAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATT
* * * ** ** * *
150818 CGCTGCCTTCAAGTTTAATCTACTACGACTCTAG-GTAAATAAGATTCGTTGCCTTTAGCTTTAA
124 CACTGCCTTCAACTTTAATCTACTAAGAAGC-AGAG-AAATAAGATTCACTGCCTTCAACTTTAA
150882 TCTGTT
187 TCTGTT
* * * * * * *
150888 CCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTACTACGATGCCAGGGAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGAA
* ** * * * * * ** *
150953 ATAAAATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAAAGAGATTTGCTGT
66 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTCACTGC
* * ** * * * * * *
151018 CTTCAGCTTTAATCTGCTGTGACGCTAGGGAAATAAGATTTACTACCTTCAGCTTTAATTTGTT
130 CTTCAACTTTAATCTACTAAGAAGC-AGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGTT
* * * * * * ***
151082 CCACTACAACG-CAATCGAAATAAGATTCACTGCCTTCTGTTTTAATCTACTACGACGCCGGGGA
1 CCACTGCAACGCCAA-GGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
** * * * * ***
151146 AATAAGATTCATTG-CTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATGAGGTTTGTTG
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTCACTG
* * * ** * *
151210 CCTTCAGCTTTAATCTACTACGACGCTAGAGAAATAAGATTTGCTGCCTT---C--T--GCTTTT
129 CCTTCAACTTTAATCTACTAAGAAGC-AGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGTT
* * * * * * * *
151268 CCACTACTACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGACGCCAAGAAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGAA
* * * * * * * *
151333 ATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATGCCAAGGAAATGTAATTCGCTGT
66 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACTGC
* * * * * * * *
151398 CGTCAGCTTTAATCTGTTCTACTGCAATGCTA-AGGAAATAAGATTCGCTGGCTTTAGCTTT-A-
130 CTTCAACTTTAATC--TACTA-AG-AA-GC-AGA-GAAATAAGATTCACTGCCTTCAACTTTAAT
151460 --G-T
188 CTGTT
* * * * * * * * * *
151462 CTATTGCGACGTCAGGGAAATAAGATT-TGGTGCCTT-ATGCTTGAATCTGTTCTACTACAACTC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCA-GCTTTAA-----TCTACTGCGACGC
* * * * * * * * * * **
151525 CAAGGAAATAAAATTTGTTGCCTTCAACTTTAA-----TCAACTGCGACGACAGGGAAATAAGAT
59 TAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGAT
* * * * * * ** * *
151585 TCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA-CACCAAAGAAATGAGATTTGCTACCTTCAG
123 TCACTGCCTTCAACTTTAATC---T--ACT--AAGAAGCAGAGAAATAAGATTCACTGCCTTCAA
151649 CTTTAATC---T
181 CTTTAATCTGTT
* * ** * * * *
151658 --AATGCAATGCCAAGGAAATAAGATT-TGCTGCCTTCAATTTTAATTTGATCCACTGCAATGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTT-A----ATCTACTGCGACGCT
* ** * * ** *
151720 AAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACACCAAAGAAATGAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCC-AAGAAATGTGATT
** * * * **
151785 TGCTACCTTCAGCTTTAATCTA--ATGCAATGCCA-AGGAAATAAGATTTGCTGCCTTCAACTTT
124 CACTGCCTTCAACTTTAATCTACTAAG-AA-G-CAGA-GAAATAAGATTCACTGCCTTCAACTTT
*
151847 AATCAGTT
185 AATCTGTT
* * * *
151855 CAACTGCAACGCCAAGGAAATAAGATT-TATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCT
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTT-A-A---TCTACTGCGACGCT
* * * * * * * * **
151919 AAGGAAATAAGATTCACTGCCTTAAGGTTTAATC---TACTCTG--ACGCTAGTGAAATAAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATT
** * * * *
151979 TGCTGCCTTCAACTTTAATC-AGTTCAACTGCAACGCCA-AGGAAATAAGATTTATTGCCTTCAG
124 CACTGCCTTCAACTTTAATCTA-CT-AA--G-AA-G-CAGA-GAAATAAGATTCACTGCCTTCAA
*
152042 CTTTAATATGTT
181 CTTTAATCTGTT
* * * * *
152054 CCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGACGGC-AACG
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGC-GAC-GCTAAGG
* * * * * * * **
152117 AAATAAGATTTGTTGTCTTCAACTTTAATCAGTTCAACTGCAATGCCAAGGAAATGAGATTTGCT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACT
* * * ** * ** * * *
152182 GCCTTCAGCTTTCATCTAATGCGATGCCA-AGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTG
128 GCCTTCAACTTTAATCTACTAAGAAG-CAGA-GAAATAAGATTCACTGCCTTCAACTTTAATCTG
152246 TT
191 TT
* * * * * * * *
152248 CCTCTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGCC
1 CCACTGCAACGCCAAGGAAATAAG-ATTCTCTGCCTTCAGCTTTAATC---T--ACTGCGACGCT
** * * * * * * ** * **
152312 GGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-TCTACTGCGATGTTAGGGAAATAAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATT
** * * * * ** * * *
152372 TGCTGCCTTCAATTTTAATTTGATCCACTGCAATGCCA-AGAAAATGGGATTCGCTGCCGTCAGC
124 CACTGCCTTCAACTTTAATCT-A-CTA-AG-AA-G-CAGAG-AAATAAGATTCACTGCCTTCAAC
*
152436 TATAATCTGTT
182 TTTAATCTGTT
* * * * * * * *
152447 CCACTGCAACGCCAACGAAAAAAGATTCGCTACCTTCAGCTTGAATATACTGCGATGAC-AGGGA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACG-CTAAGGA
* * * ** * *
152511 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGTCAAGGAAATAAGATTTATTG
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACTG
* * * *
152576 CCTTCAGCTTTAATATGTTCCACTACA-ACGCTA-AGGAAATAAGATTCACTGCCTT-AAGGTTT
129 CCTTCAACTTT-A-A---TCTACTA-AGAAGC-AGA-GAAATAAGATTCACTGCCTTCAA-CTTT
152638 AATC---T
185 AATCTGTT
* * * * * * * *
152643 ACTCTG--ACGGCAACGAAATAAGATT-TGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATC---T--ACTGCGACGCT
* * * * * * **
152705 AAGGAAATGAGATTTGCTGCCTTCAGCCTTCATC---T--AATGCGATGCCAAGGAAATAAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGA-T
* * * ** * * *
152765 TGCAC--CCTTCAGCTTTAATTTGTTCCTCTGCAATGCCA-AGGAAAT-GGAATTCGCTGCTTTC
123 T-CACTGCCTTCAACTTTAA--T-CTACTAAG-AA-G-CAGA-GAAATAAG-ATTCACTGCCTTC
* *
152826 AGCTTTAATCTATT
179 AACTTTAATCTGTT
** * * * * *
152840 CCACTGCAACGCCGGGGAAATAAGAGTCGT-TGGCTTTAGCTTTAGTCTACTGCGACG-TCAGGG
1 CCACTGCAACGCCAAGGAAATAAGATTC-TCTGCCTTCAGCTTTAATCTACTGCGACGCT-AAGG
* * * * * * * * ** *
152903 AAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACGGCAGGGAAATAAGATTCGCT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTCACT
* * * * * * *
152968 GCCTTCAGCTTTAATCTGTTCTACTGAAACGCCA-AGGAAATAAGATTCACCGTCTTTAGCTTT-
128 GCCTTCAACTTTAATC--TACTA-AG-AA-G-CAGA-GAAATAAGATTCACTGCCTTCAACTTTA
153031 A---G-T
186 ATCTGTT
* * *** * * *
153034 CTATTGCGGTGCCAGGGAAATAAGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACAGC
1 CCACTGCAACGCCAAGGAAATAAGATTCTC-TGCCTTCAGCTTTAATC---T--ACTGCGAC-GC
* * * * **
153098 -AAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGGAAATAAGAT
59 TAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGAT
** * * * ** * ** * **
153162 TTGCTACCTTCAGCTTTAATTTACTGTGACGACATG-GAAATAA-AGTTTGCTACCTTCAGTTTT
123 TCACTGCCTTCAACTTTAATCTACTAAGAAG-CA-GAGAAATAAGA-TTCACTGCCTTCAACTTT
*
153225 ATTCTGTT
185 AATCTGTT
* * * *
153233 CCACTGCAACGCCAAGGAAATAAGATT-TACTGCCTTCAACTTTAATATGTTCCACTGCAACGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTT-A-A---TCTACTGCGACGCT
* * * * * * * * **
153297 AAGGAAATAAGATTCTCTGCCTTTAACTTT-AGC--TT--ACTGCGACGCCAGGGATATAAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATT
* * * * * * * * *
153357 CACTGCCTTTAGCGTTAATCTGTTCCACTGTAATGCCA-AGAAAATGAGATTCGCTGCATT-AAG
124 CACTGCCTTCAACTTTAATC--TACTA-AG-AA-G-CAGAG-AAATAAGATTCACTGCCTTCAA-
153420 CTTTAA-C----
181 CTTTAATCTGTT
* * * * * * * * *
153427 CTACTGCGACGCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTT
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATC---T--ACTGCGACGCTA
* * * ** * * *
153492 AGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT--A---CAACGTTAGGGAAATGAGATTT
61 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTC
* * * ** * * * * * *
153552 GCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGGAATAAGATTCGCTGCTTTCAGCTT
125 ACTGCCTTCAACTTTAA-----TCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTT
153617 TAATCTGTT
184 TAATCTGTT
** * * * * *
153626 CCACTGCAACGCCGGGGAAATAAGAGTCGT-TGGCTTTAGCTTTAGTCTACTGCGACG-TCAGGG
1 CCACTGCAACGCCAAGGAAATAAGATTC-TCTGCCTTCAGCTTTAATCTACTGCGACGCT-AAGG
* * * * * * * * ** *
153689 AAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACGGCAGGGAAATAAGATTCGCT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTCACT
* * * *
153754 GCCTTCAGCTTTAA--T-CT-------A-AG--AT----TT-ACTTACATTCAGC-TTAATCTGT
128 GCCTTCAACTTTAATCTACTAAGAAGCAGAGAAATAAGATTCAC-TGCCTTCAACTTTAATCTGT
153800 T
192 T
* * * * *
153801 CCACTGCAATGCCAGGGAAA-AGAGATT-TGCTGCCTTCAGCTTTAATCTGCTGTGACGCTAGGG
1 CCACTGCAACGCCAAGGAAATA-AGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAGG
** * * * * **
153864 AAATAAGATTTACTACCTTCAGCTTTAATTTGTTCCACTACAACG-CAATCGAAATAAGATTCAC
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA--GAAATGTGATTCAC
** * * * * *
153928 TGCCTTCAGTTTTAATCTACTACGACGCCAGGGAAATAAAATTCACTG-CTTCAGCTTTAATCTG
127 TGCCTTCAACTTTAATCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTG
153992 TT
191 TT
* * * * *
153994 CCACTGCAACGCCAGGGAAATGAGATT-TGTTGCCTTCAGCTTTAATCTACTACGATGCT-AGAG
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATCTACTGCGACGCTAAG-G
* * * * * **
154057 AAATAAGATTTGCTGCCTTCTGC-----T-T-TTCCACTAG-TACGCCAAGGAAATGAGATTTGC
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACT-GCAATGCCAA-GAAATGTGATTCAC
** * * * ** * * * * *
154114 TGCCTTCAGTTTTAATCTAATACGACGCCA-AGGAAATAAGATTTGCTTCTTTTAGCTTTAATTT
127 TGCCTTCAACTTTAATCTACTAAGAAG-CAGA-GAAATAAGATTCACTGCCTTCAACTTTAATCT
154178 GTT
190 GTT
* * * * * * * *
154181 CCACTGTAATGCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCT
1 CCACTGCAACGCCAAGGAAAT-AAGATTCTCTGCCTTCAGCTTTAA-----TCTACTGCGACGCT
* * * * * * ** * * *
154245 AAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGAC-GTC-AGGGAAATAAGATTTGG
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT-CCACTG-CAATGCCAAGAA-ATGTGA
* * * * ** * **
154308 TGC-CTTCCGCTTGAATCTGT--TCTACTACA-ACTCCA-AGGAAATAAAATTTGCTGCCTTCAA
122 TTCAC-TGC-CTTCAA-CTTTAATCTACTA-AGA-AGCAGA-GAAATAAGATTCACTGCCTTCAA
154368 CTTTAA-----T
181 CTTTAATCTGTT
* ** * * * * * *
154375 CAACTGTGACGACAGGGAAATAAGATTCCCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATC---T--ACTGCGACGCTA
* * * * * * * * ** *
154440 AAGAAATGAGATTTGCTACTTTCAGCTTTAATC---T--AATGCGACGCCAAGGAAATAAGATTT
61 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTC
* * * * * * ** * *
154500 GCTACCTTCAATTTTAATTTGATCCACTACAATGCCA-AGAAAATGGGATTCGCTGCCGTCAACT
125 ACTGCCTTCAACTTTAATCT-A-CTA--AGAA-G-CAGAG-AAATAAGATTCACTGCCTTCAACT
*
154564 ATAATCTGTT
183 TTAATCTGTT
* * *
154574 ACCTTCAGCTTGAATCTACTGCGATGACACGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGT
1 --C--CA-C-TG---CAAC-GC-----CAAGGAAATAAGATTCTCTGCCTTCAGCTTTAA-----
* * * * * *** * *
154639 TCTACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCC
46 TCTACTGCGACGCTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCC
* * * * * * *
154704 AAGGAAATAAT-ATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCA-AGGAAATAATA
111 AA-GAAAT-GTGATTCACTGCCTTCAACTTTAATC--TACTA--AGAA-G-CAGA-GAAATAAGA
* * *
154767 TTTATTGCCTTCAGCTTTAATCTGTT
167 TTCACTGCCTTCAACTTTAATCTGTT
* * * * * * * * *
154793 CTACTACAATGCCAAGGAAATAATATT-TATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAA-----TCTACTGCGACGCT
* *** * * *
154857 AAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAAT-AT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAAT-GTGAT
* * * * * * * * *
154921 TTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCA-AGGAAATAATATTTATTGCCTTCAG
123 TCACTGCCTTCAACTTTAATC--TACTA--AGAA-G-CAGA-GAAATAAGATTCACTGCCTTCAA
154985 CTTTAATCTGTT
181 CTTTAATCTGTT
* * * * * * * ** * *
154997 CTACTGAAACGCCAAGGAAGTAAGATTCATC-GCCTTTACCTTTAGTCTATTGCGGTGCCAGGGA
1 CCACTGCAACGCCAAGGAAATAAGATTC-TCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* * * *
155061 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAA-GTAAGATTCA-T
65 AATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAGAAATGT--GATTCACT
* * * * ** ** * * *
155124 CGCCTTTACCTTTAGTCTATTGCGGTGCCAGGGAAATAAGATTCGCTACCTTCAACTTTAATC--
128 -GCCTTCAACTTTAATCTACTAAGAAG-CAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTG
155187 -T
191 TT
* * * * * * * * *
155188 --ACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTC-CAGGT
1 CCACTGCAACGCCAAGG-AAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGG-
* * * * * * ** *
155249 AAATAAGATTCGCTACCTTCAACTTTAATC--TACTAC-G-ACT-CCAGGTAAATAAGATTCGCT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAG-AAATGTGATTCACT
* * ** * *
155309 ACCTTCAACTTTAATCTACTACGACTCCAG-GTAAATAAGATTCGCTACCTTCAACTTTAATC--
128 GCCTTCAACTTTAATCTACTAAGA-AGCAGAG-AAATAAGATTCACTGCCTTCAACTTTAATCTG
155371 -T
191 TT
* * * * * * * * *
155372 --ACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTC-CAGGT
1 CCACTGCAACGCCAAGG-AAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGG-
* * * * * * ** *
155433 AAATAAGATTCGCTACCTTCAACTTTAATC--TACTAC-G-ACT-CCAGGTAAATAAGATTCGCT
64 AAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAG-AAATGTGATTCACT
* * ** * *
155493 ACCTTCAACTTTAATCTACTACGACTCCAG-GTAAATAAGATTCGCTACCTTCAACTTTAATC--
128 GCCTTCAACTTTAATCTACTAAGA-AGCAGAG-AAATAAGATTCACTGCCTTCAACTTTAATCTG
155555 -T
191 TT
* * * * * * * * * *
155556 --ACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGATGCCAGGGA
1 CCACTGCAACGCCAAGG-AAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGA
* * * * ** *
155618 AATAAGATTCGCTGCCTTCAAG-TTTAATC--TACTAC-G-ACT-CCAGGTAAATAAGATTCGCT
65 AATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAATGCCAAG-AAATGTGATTCACT
* * * * *
155677 ACCATT-AGCTTTAATCTGTTCCACTACA-ACGCTGAGGAAATAAGATTCACCGCCTTCAACTTT
128 GCC-TTCAACTTTAATC---T--ACTA-AGAAGCAGA-GAAATAAGATTCACTGCCTTCAACTTT
155740 AATC---T
185 AATCTGTT
* * * * * * * * *
155745 --ACTACGATGCCAGGGAAATAAGATT-TACTACATTCAGCTTTAATCTGTTCCACTGCAATGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTCAGCTTTAATC---T--ACTGCGACGCT
* * * * * **
155807 AGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTGCTGT-GAC-GCTA-G---GGAAATAAGA
60 AAGGAAATA-AGATTCGCTGCCTTCAGCTTTAATCTG-T-TCCACTGCAATGCCAAGAAATGTGA
* * *
155865 TTTACTACCTTCAACTTTAATCTGTTCCACTACA-ACGCA-ATCGAAATAAGATTCACTGCCTTC
122 TTCACTGCCTTCAACTTTAATC---T--ACTA-AGAAGCAGA--GAAATAAGATTCACTGCCTTC
**
155928 AGTTTTAATC---T
179 AACTTTAATCTGTT
* * * * * **
155939 --ACTACGACGCCAGGGAAATAAGATTCACTG-CTTCAGCTTTAATCTGTTCCACTGCAACGAAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATC---T--ACTGCGACGCTA
* * * * * * ***
156001 AGGAAATAAGATTCGCGGCCTTCAGGTTTAATC---T--ACAGCGACGCCAGGGAAATAAAATTC
61 AGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTC
* * * * * * * * *
156061 GCTGGCTTCAACTTTAATCTGTTCCACTGCAACGCTGAGGGAATAAGACTC-GTGTCCTTCTAA-
125 ACTGCCTTCAACTTTAATC--TACTA-AG-AA-GCAGA-GAAATAAGATTCACTG-CCTTC-AAC
156124 TTTAATC---T
182 TTTAATCTGTT
* * * *
156132 --ACTGCCACGCCAGGGAAATAAGATTCGCCGCCTTCAGCTTTAATCTACTGCGACGCCAATGCC
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACG-C--T---
* * * * * * * **
156195 AAAGAAATGAGATTCGCTGCCTTCAACTTTAA--T-TT--ACTACAACGGCAGGGAAATAAGATT
60 AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATT
** * * ** ** * *
156255 TGCTGCCTTTAGCTTTAATCTACTGCGACTCCAGGGAAATAAGATTCGCTGCCTTCAGA-TTTAA
124 CACTGCCTTCAACTTTAATCTACTAAGA-AGCAGAGAAATAAGATTCACTGCCTTCA-ACTTTAA
156319 TCTGTT
187 TCTGTT
* * * * * **
156325 CCACTGCAACGCCAAAGAAATAAGATTCGCTTCCTTCTGCTTTAATCTACTTCGAC-CCCAGGAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGAA
* * * * *
156389 ATAAGATTCGTTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCA----
66 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAA-GAAATGTGATTCACTGC
* ** ** * * * * *
156450 -TTCAGCTTTAATCTACTGTGACCCCAGCGAAATAAGATTCGCTACCTTCAGCTTTAATCTATT
130 CTTCAACTTTAATCTACTAAGA-AGCAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGTT
* * * *
156513 CCACTGCAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAATCTACTACGACGCTAGGGAA
1 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGAA
** * * * * * * * * *
156578 ATAAGATTTACTACCTTCAACTTGAATCTGTTCCACTGCAACGCGAGGGAAATGAGATTCGCTAC
66 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCA-AGAAATGTGATTCACTGC
* *
156643 CTTTAGCTTTAATCTACT
130 CTTCAACTTTAATCTACT
156661 GCGACGCTAG
Statistics
Matches: 7239, Mismatches: 1560, Indels: 1334
0.71 0.15 0.13
Matches are distributed among these distances:
173 1 0.00
174 3 0.00
175 123 0.02
176 11 0.00
177 1 0.00
178 2 0.00
180 2 0.00
182 2 0.00
183 2 0.00
184 366 0.05
185 10 0.00
186 127 0.02
187 225 0.03
188 179 0.02
189 343 0.05
190 45 0.01
191 37 0.01
192 172 0.02
193 493 0.07
194 2919 0.40
195 182 0.03
196 93 0.01
197 82 0.01
198 177 0.02
199 1114 0.15
200 24 0.00
201 107 0.01
202 5 0.00
203 3 0.00
204 224 0.03
205 4 0.00
206 3 0.00
207 1 0.00
208 4 0.00
209 3 0.00
210 2 0.00
213 1 0.00
214 67 0.01
215 1 0.00
216 1 0.00
217 2 0.00
219 73 0.01
220 2 0.00
221 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (192 bp):
CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAGCTTTAATCTACTGCGACGCTAAGGAA
ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAATGCCAAGAAATGTGATTCACTGCC
TTCAACTTTAATCTACTAAGAAGCAGAGAAATAAGATTCACTGCCTTCAACTTTAATCTGTT
Found at i:148015 original size:148 final size:148
Alignment explanation
Indices: 147580--156779 Score: 3602
Period size: 148 Copynumber: 62.8 Consensus size: 148
147570 ACTTTAATCT
* * * *
147580 ACTGCGACGCC-AGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACT-CGAATGCCA
1 ACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCG-ACGCCA
* * * ** *
147643 AGAAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGTGACGTC-AGGAAAATAAGATT
59 GGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGATT
* * * *
147702 -ACTTCTTTCAGCTTTAATATGTTCC
123 CGCTGCCTTCAGCTTTAATCTGTTCC
* * * * * ** ** * *
147727 AGTGCAACGCCAGGGAAATGAGATTCGATGCCTTTAAATTTAATCTAGAGCGACGCTAGGGAAAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * *
147792 AAG-TTTGCTGCCGTCAGCTTTAATTTCTTCCACTGCAATG-CAATGGAAATGAGATTCGCTGCC
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* *
147855 TTTAGCTTTAATCTATTCC
130 TTCAGCTTTAATCTGTTCC
** * * *
147874 ACTGCAACGGAAATGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * *
147939 AAGATTCGCTGCCTTCAACTTTAATCTATTCCACTGCAACACCAAGGAAATAAGATTTGCTACGT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
*
148004 GCAGCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * * ** * * * * *
148017 ACTGCGATGCCAGGGAAATAAAATTTACTGCCTTTAACTTTAATTTGTTCCACTGCAATGCCAGG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCAGG
* * * * * *
148082 GAAATGATATTTC-CTGCCTTTAGCTTTAATC---T--ACTGCGACG-CTAGAGAAATAAGATTT
61 GAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGATTC
* *
148140 GTTGCCTCCTA-CTTTAATCTGTTCC
124 GCTGCCTTC-AGCTTTAATCTGTTCC
* * * * * * * * ** *
148165 ACTGCAACACTAAGGAAATGAGATTTGCTACCTTTAGCTTTAATCTAATGTGACGTTAAGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * ** * *
148230 AAGATTTGTTGCCTTCAGCTTTAATTTGTTCCACTACAACGCCAAGGAAAGGAGATTCGCTGTCA
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
148295 TCAGCTTTAATCTGTTCC
131 TCAGCTTTAATCTGTTCC
* * * * * *
148313 ACTGCAACGCCAGGGAAATAAGATTCACTGGCTTTATCTTTAGTCTACTGCGACGCCAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * ** * * * *
148378 AAGGTTTGCTGCCTTCAGTTTTAATCTGTTCCGCTGCAATACCAAGGAGATGAGATTCGTTACCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
148443 TCAGCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * * ** * * * * * *
148456 ACTGCGACGCTAGGGAAATAATATTTACTACCTTCAGCTTTATTCTGTTCCACTACAATGCTAGG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * * * *
148521 GAAATGAA-ATTTGTTGCCTCCTGCTTTAATC---T--ACTGCGACGCTAGGGAAATAAGATTTG
61 GAAAT-AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * **
148580 TTACCGCCAGCTTTAATCTGTTCC
125 CTGCCTTCAGCTTTAATCTGTTCC
* ** ** * * * * *
148604 ACTGCGACTACAAAAAAATGAGATTCTCTGGCTTCAGCTTTAACCTACTGCGACGCTAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * *
148669 AAGATTCACTGCCTTCTGCTTTAATCTATTCCACTACAACGCTAAGGAAATAAGACTCGCTGCCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
*
148734 TCATCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * * * * * * **
148747 ACTGCGATGCCAGGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATTCTACTGCAATGCAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTT-A---A-TCTACTGCGACGCCAGG
* * * * * * * *
148812 GAAATGAGATTCACTGCCTTCAACTTGAATC---T--ACTGCGACGCCAGGGAAATAAGATTTGT
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* *
148872 TGCCTTTAACTTTAATCTGTTCC
126 TGCCTTCAGCTTTAATCTGTTCC
* * * * * *
148895 ACTACAACGCCAAGGAAATAAGATTCACTTCCTTCAGCTTTAATTTACTGCGCCAG-CAGAGAAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGAC-GCCAGGGAAA
* * * * *
148959 TAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCGCTGCC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
149024 TTCAGCTTTAATCTG----
130 TTCAGCTTTAATCTGTTCC
* * * *** * * *
149039 -CTGCGATGCCAGGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTTCCACTGCAACGCCAGG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * * *
149103 GAAATGAGATTTGTTGCCTTCAGCTTTAATC---T--ACTACGACG-CTAGAGAAATAAGATTTG
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGATTCG
* **
149162 CTGCCTTCTGCTTT--TCCATT--
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * * *
149182 ACT---ACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAATACGACGCCAAGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * * * *
149244 AAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATGCCAAGGAAATGTA-ATTCGCTGTC
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAAT-AAGATTCGCTGCC
* *
149308 GTCAGCTTTAATCTGTTCT
130 TTCAGCTTTAATCTGTTCC
* * * * * * *
149327 ACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGACGTCAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * * * * *
149392 AAGATTTGGTGCCTTCTGCTTTAATCTATTCTACTACAACTCCAAGGAAATAAAATTTGCTGCCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
* * *
149457 TCAACATTAA-----TCA
131 TCAGCTTTAATCTGTTCC
* * * * * **
149470 ACTGCGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * *
149535 GAAATGAGATTTGCTACCTTCAGCTTTAATC---T--AATGCGACGCCAAGGAAATAAGATTTGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* ** * *
149595 TACCTTCAATTTTAATTTGATCC
126 TGCCTTCAGCTTTAATCTGTTCC
* * * ** * * * **
149618 ACTGCAATGTCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACGCCAAC
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * * *
149683 GAAATAAGATTCGCTACCTTCAGCTTGAATC---T--ACTACGATGACAGGGAAATAAGATTCGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
*
149743 TGCCTTCAGCTTTAATC-GGTCC
126 TGCCTTCAGCTTTAATCTGTTCC
* * *** * * * *
149765 ACTACAATGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTT-A-A---TCTACTGCGACGCCAGG
* * * *
149830 GAAATAAGATTCACTGCCTTAAGGTTTAATC---T--ACT-CTAACGCC-AGCGAAATAAGATTT
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGC-AACGCCAAG-GAAATAAGATTC
* * *
149888 GCTGCCTTCAACTTTAATCAGTTCA
124 GCTGCCTTCAGCTTTAATCTGTTCC
* * * * * * * * *
149913 ACTACAACGCCAAGGAAATGAGATTTGCTGCCTTTAGCTTTCACCTAATGCGATGCCAAGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * *
149978 AAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-GGAATTCGCTGCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG-ATTCGCTGCC
150042 TTCAGCTTTAATCTGTTCC
130 TTCAGCTTTAATCTGTTCC
* ** * * * * * * * *
150061 ACTGCGACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCAACGTCAGGGAAAC
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * * * ** *
150126 AAGATTTGTTGCCTTCTGCTTTTACTCTGTTCTACTGCAATGACAGAAAAAATAAGATTCACTGC
66 AAGATTCGCTGCCTTCAGC-TTTAATCTGTTCCACTGCAACGCCA-AGGAAATAAGATTCGCTGC
*
150191 CTTCAGCTTTAATCTGTTCT
129 CTTCAGCTTTAATCTGTTCC
* * * * * * * *
150211 ACTGAAACGCCAAGGAAATAAGATTCACCGCCTTTACCTTTAGTCTATTGCTG-TGCCAGGGAAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGC-GACGCCAGGGAAA
** * * * * * *
150275 TAAGATTCATTGCCTTCAACTTTAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCGCCGCC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
*
150340 TTCAGCTTTAACCTGTTCC
130 TTCAGCTTTAATCTGTTCC
* * * * * * * *
150359 ATTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTGCGACGACATGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * *
150424 AA-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCC
66 AAGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
* *
150488 TTCAACTTT-AGC--TT--
130 TTCAGCTTTAATCTGTTCC
* * * * * * * * * *
150502 ACTGCGACGCTAGGGATATAAGATTCACTGCCTTTAGCATTAATCTGTTCCACTGCAATGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * * *
150567 AAAATGAGATTCGCTGCATTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATAAGATTCAC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* *
150627 TGGCTTCAGGTTTAATCTGTTCC
126 TGCCTTCAGCTTTAATCTGTTCC
** * * * **
150650 ACTGCAACGCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATTACGACGTTAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * ** * *
150715 GAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGG-AATAAGATTCGCTTCC
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCC-AAGGAAATAAGATTCGCTGCC
150779 TTCAGCTTTAATC---T--
130 TTCAGCTTTAATCTGTTCC
* * * * * * *
150793 ACTGCAACACCAGGGAAATGAGATTCGCTGCCTTCAAG-TTTAATCTACTACGACTCTAGGTAAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTACTGCGACGCCAGGGAAA
* * * * *
150857 TAAGATTCGTTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
150922 TTCAGCTTTAATC---T--
130 TTCAGCTTTAATCTGTTCC
* * * * * ** * * * *
150936 ACTACGATGCCAGGGAAATAAAATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * ** * * **
151001 GAAA-AGAGATTTGCTGTCTTCAGCTTTAATCTG-----CTGTGACGCTAGGGAAATAAGATTTA
61 GAAATA-AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* *
151060 CTACCTTCAGCTTTAATTTGTTCC
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * * * * *
151084 ACTACAACG-CAATCGAAATAAGATTCACTGCCTTCTGTTTTAATCTACTACGACGCCGGGGAAA
1 ACTGCAACGCCAA-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
** * * * * *
151148 TAAGATTCATTG-CTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATGAGGTTTGTTGCC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
151212 TTCAGCTTTAATC---T--
130 TTCAGCTTTAATCTGTTCC
* * * * * * * * *
151226 ACTACGACG-CTAGAGAAATAAGATTTGCTGCCTTCTGCTTT--TCCACTACTACGCCAAGGAAA
1 ACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
* ** * * * *
151288 TGAGATTCGCTGCCTTCAGCTTTAATCTAAT--AC-G--ACGCCAAGAAAATAAGATTTGCTTCT
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
*
151348 TTCAGCTTTAATTTGTTCC
130 TTCAGCTTTAATCTGTTCC
* * * * * * * * *
151367 ACTGTAATGCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCTAA
1 ACTGCAACGCCAAGGAAAT-AAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCAG
* * * * * * * *
151431 GGAAATAAGATTCGCTGGCTTTAGCTTT-A---G-TCTATTGCGACGTCAGGGAAATAAGATTTG
60 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * *
151491 GTGCCTT-ATGCTTGAATCTGTTCT
125 CTGCCTTCA-GCTTTAATCTGTTCC
* * * * * * * *
151515 ACTACAACTCCAAGGAAATAAAATTTGTTGCCTTCAACTTTAATCAACTGCGACGACAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * *
151580 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGCTACCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
151645 TCAGCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * ** * * * *
151658 AATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAATTTTAATTTGATCCACTGCAATGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTT-A----ATCTACTGCGACGCCAGG
* ** * * * * * *
151723 AAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
*
151788 TACCTTCAGCTTTAATC---T--
126 TGCCTTCAGCTTTAATCTGTTCC
* * * * * *
151806 AATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
*** * * *
151871 GAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCAC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * *
151936 TGCCTTAAGGTTTAATC---TAC
126 TGCCTTCAGCTTTAATCTGTTCC
* * * * * *
151956 TCTG--ACG-CTAGTGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAA
1 ACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAG
*** * * *
152018 GGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCA
60 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * *
152083 CTGCCTTAAGGTTTAATC---TAC
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * * * * * * * *
152104 TCTG--ACGGCAACGAAATAAGATTTGTTGTCTTCAACTTTAATCAGTTCAACTGCAATGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * * *
152167 GAAATGAGATTTGCTGCCTTCAGCTTTCATC---T--AATGCGATGCCAAGGAAATAAGATTTGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* *
152227 TCCCTTCAGCTTTAATTTGTTCC
126 TGCCTTCAGCTTTAATCTGTTCC
* * * * * * *
152250 TCTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGCCGG
1 ACTGCAACGCCAAGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAG
* * * * * * * ** * *
152314 GGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-TCTACTGCGATGTTAGGGAAATAAGATTTG
60 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
** * *
152374 CTGCCTTCAATTTTAATTTGATCC
125 CTGCCTTCAGCTTTAATCTGTTCC
* * ** * * * **
152398 ACTGCAATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACGCCAAC
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * * * *
152463 GAAAAAAGATTCGCTACCTTCAGCTTGAA--T-AT--ACTGCGATGACAGGGAAATAAGATTCGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
*
152523 TGCCTTCAGCTTTAATCTGTTCT
126 TGCCTTCAGCTTTAATCTGTTCC
* * * *** * * * * *
152546 ACTACAATGTCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTACAACGCTAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTT-A-A---TCTACTGCGACGCCAGG
* * * * * * * *
152611 GAAATAAGATTCACTGCCTTAAGGTTTAATC---TACTCTG--ACGGCAACGAAATAAGATTTGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* * * *
152671 TGTCTTCAACTTTAATCAGTTCA
126 TGCCTTCAGCTTTAATCTGTTCC
* * * * * * *
152694 ACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGCCTTCATCTAATGCGATGCCAAGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* ** * * * * *
152759 AAGATTTGCACCCTTCAGCTTTAATTTGTTCCTCTGCAATGCCAAGGAAAT-GGAATTCGCTGCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG-ATTCGCTGCC
*
152823 TTCAGCTTTAATCTATTCC
130 TTCAGCTTTAATCTGTTCC
** * * * * * *
152842 ACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * * *
152907 AAGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACGGCAGGGAAATAAGATTCGCTGCCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
*
152972 TCAGCTTTAATCTGTTCT
131 TCAGCTTTAATCTGTTCC
* * * * * * * **
152990 ACTGAAACGCCAAGGAAATAAGATTCACCGTCTTTAGCTTTAGTCTATTGCGGTGCCAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * *
153055 AAGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACAG-CAAGGAGATGAGATTCGCTGC
66 AAGATTCGC-TGCCTTCAGCTTTAATCTGTTCCACTGCAAC-GCCAAGGAAATAAGATTCGCTGC
*
153118 CTTCAGCTTTAACCTGTTCC
129 CTTCAGCTTTAATCTGTTCC
* * * * * * * *
153138 ACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTGTGACGACATGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * **
153203 AA-AGTTTGCTACCTTCAGTTTTATTCTGTTCCACTGCAACGCCAAGGAAATAAGATTTACTGCC
66 AAGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
* *
153267 TTCAACTTTAATATGTTCC
130 TTCAGCTTTAATCTGTTCC
* * * * *
153286 ACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAACTTT-AGCTTACTGCGACGCCAGGGATA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC-TACTGCGACGCCAGGGAAA
* * * * * * * *
153350 TAAGATTCACTGCCTTTAGCGTTAATCTGTTCCACTGTAATGCCAAGAAAATGAGATTCGCTGCA
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
* *
153415 TTAAGCTTTAA-C----CT
130 TTCAGCTTTAATCTGTTCC
* * * * * * * *
153429 ACTGCGACGCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTA-
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGC-CAG
* * ** * * *
153493 GGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT--A---CAACGTTAGGGAAATGAGATTTG
60 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
*
153553 CTGCCTTCAGCTTTAATTTGTTCC
125 CTGCCTTCAGCTTTAATCTGTTCC
** * * * *
153577 ACTGTGATGCCAAAGG-AATAAGATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCGG
1 ACTGCAACGCC-AAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAG
* * * * * * * * *
153641 GGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-TCTACTGCGACGTCAGGGAAATAAGATTTG
60 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * * *
153701 TTGCCTTCTGCTTTACTCTGTTCT
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * * * **
153725 ACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTAAGATTTACTTACATTCAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT---A-CTGC-GAC-GCCAG
*** ** * * * *** *** ** ** ** **
153790 CTTAATCTG-TTCCACTGCAATGCCAG-GGAAAAGAGATT-TGCTGC--CTTC-AGCTTTAATCT
60 GGAAATAAGATT-CGCTGC-CT-TCAGCTTTAATCTG-TTCCACTGCAACGCCAAG--GAAATAA
* *** * * * **
153849 GCTGTGACGCTAGGGAAATAAGATTTACTACCTTCAGCTTTA
119 GAT-T--CGCT---GCCTTCAGCTTTA--A---TCTG-TTCC
* * ** * * * * ** * * * * * * * * * * *
153891 ATTTGTTCCACTACAACGCAATCGAAATAAGAT-TC-ACTGCCTTCAGTTTTAAT-CTACTACGA
1 A-CTG--CAACGCCAAGGAAAT-AAGATTCGCTGCCTTCAG-CTTTA-ATCTACTGCGAC-GCCA
* ** *** * **** * * * * * * * * ***
153953 CGCCAGGGAAATAAAAT-TC-ACTGC-TTCAGCT-TT-AATCTGTTCCACTG-CAACGCCAGGGA
59 GGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCA-CTG--CAAC-GCCAA-G-GAAATA
** * *** * * * * *
154012 A-ATGAGATTTGTT--GCCTTCAGCTTTAATCT
118 AGATTCGCTGCCTTCAGCTTTAATCTGT--TCC
* * * * * * * * *
154042 ACTACGATG-CTAGAGAAATAAGATTTGCTGCCTTCTGCTTT--TCCACTAG-TACGCCAAGGAA
1 ACTGCAACGCCAAG-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACT-GCGACGCCAGGGAA
* * * ** * *
154103 ATGAGATTTGCTGCCTTCAGTTTTAATCTAAT--AC-G--ACGCCAAGGAAATAAGATTTGCTTC
64 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGC
* * *
154163 TTTTAGCTTTAATTTGTTCC
129 CTTCAGCTTTAATCTGTTCC
* * * * * * * * *
154183 ACTGTAATGCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCTAA
1 ACTGCAACGCCAAGGAAAT-AAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCAG
* * * * * * * *
154247 GGAAATAAGATTCGCTGGCTTTAGCTTT-A---G-TCTATTGCGACGTCAGGGAAATAAGATTTG
60 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
* * * *
154307 GTGCCTTCCGCTTGAATCTGTTCT
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * * * * * *
154331 ACTACAACTCCAAGGAAATAAAATTTGCTGCCTTCAACTTTAATCAACTGTGACGACAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * * * * * *
154396 AAGATTCCCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGCTACTT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
154461 TCAGCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * * ** * * * * *
154474 AATGCGACGCCAAGGAAATAAGATTTGCTACCTTCAATTTTAATTTGATCCACTACAATGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTT-A----ATCTACTGCGACGCCAGG
* ** * * * * *
154539 AAAATGGGATTCGCTGCCGTCAACTATAATCTGTTACCTTCAGCTTGAATCTACTGCGATGACAC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTT--C--CA-C-TG---CAAC-GC-----CAA
*
154604 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCT
111 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
* * * *** * * * *
154642 ACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCAGG
* *** * * * * ***
154707 GAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
*
154772 TGCCTTCAGCTTTAATCTGTTCT
126 TGCCTTCAGCTTTAATCTGTTCC
* * * *** * * * *
154795 ACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCAGG
* *** * * * * ***
154860 GAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
*
154925 TGCCTTCAGCTTTAATCTGTTCT
126 TGCCTTCAGCTTTAATCTGTTCC
* * * *** ** *
154948 ACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCTACTGCGACGCCAGG
* * * * * * *** *
155013 GAAGTAAGATTC-ATCGCCTTTACCTTT-A---G-TCTATTGCGGTGCCAGGGAAATAAGATTCG
61 GAAATAAGATTCGCT-GCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCG
*
155072 CTGCCTTCAGCTTTAATCTGTTCT
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * * * * * **
155096 ACTGAAACGCCAAGGAAGTAAGATTC-ATCGCCTTTACCTTTAGTCTATTGCGGTGCCAGGGAAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCT-GCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
* * * * * *
155160 TAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACTCC-AGGTAAATAAGATTCGCTAC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGATTCGCTGC
*
155219 CTTCAACTTTAATC---T--
129 CTTCAGCTTTAATCTGTTCC
* * * * * * * *
155234 ACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAA
1 ACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
* * * * * *
155298 TAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACTCC-AGGTAAATAAGATTCGCTAC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGATTCGCTGC
*
155357 CTTCAACTTTAATC---T--
129 CTTCAGCTTTAATCTGTTCC
* * * * * * * *
155372 ACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAA
1 ACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
* * * * * *
155436 TAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACTCC-AGGTAAATAAGATTCGCTAC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGATTCGCTGC
*
155495 CTTCAACTTTAATC---T--
129 CTTCAGCTTTAATCTGTTCC
* * * * * * * *
155510 ACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAA
1 ACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
* * * * * *
155574 TAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTCGCTGCC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCC
155634 TTCAAG-TTTAATC---T--
130 TTC-AGCTTTAATCTGTTCC
* * * * * * *
155648 ACTACGACTCC-AGGTAAATAAGATTCGCTACCATT-AGCTTTAATCTGTTCCACTACAACG-CT
1 ACTGCAACGCCAAGG-AAATAAGATTCGCTGCC-TTCAGCTTTAATC---T--ACTGCGACGCCA
* * * * * * *
155710 GAGGAAATAAGATTCACCGCCTTCAACTTTAATC---T--ACTACGATGCCAGGGAAATAAGATT
59 G-GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
** * *
155770 TACTACATTCAGCTTTAATCTGTTCC
123 CGCTGCCTTCAGCTTTAATCTGTTCC
* * * * * *
155796 ACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTAGGGAAA
1 ACTGCAACGCCAAGGAAATA-AGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAA
** * * * * *
155860 TAAGATTTACTACCTTCAACTTTAATCTGTTCCACTACAACG-CAATCGAAATAAGATTCACTGC
65 TAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGC
*
155924 CTTCAGTTTTAATC---T--
129 CTTCAGCTTTAATCTGTTCC
* * * * * ** *
155939 ACTACGACGCCAGGGAAATAAGATTCACTG-CTTCAGCTTTAATCTGTTCCACTGCAACGAAAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * * * * *
156003 GAAATAAGATTCGCGGCCTTCAGGTTTAATC---T--ACAGCGACGCCAGGGAAATAAAATTCGC
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGC
* *
156063 TGGCTTCAACTTTAATCTGTTCC
126 TGCCTTCAGCTTTAATCTGTTCC
** * * * *
156086 ACTGCAACGCTGAGGGAATAAGACTCG-TGTCCTTCTA-ATTTAATCTACTGCCACGCCAGGGAA
1 ACTGCAACGCCAAGGAAATAAGATTCGCTG-CCTTC-AGCTTTAATCTACTGCGACGCCAGGGAA
* * * * * * *
156149 ATAAGATTCGCCGCCTTCAGCTTTAATCTACTGCGAC-GCCAATGCCAAAGAAATGAGATTCGCT
64 ATAAGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTG-CAACGCCAAGGAAATAAGATTCGCT
*
156213 GCCTTCAACTTTAA--T-TT--
127 GCCTTCAGCTTTAATCTGTTCC
* * * * * *
156230 ACTACAACGGCAGGGAAATAAGATTTGCTGCCTTTAGCTTTAATCTACTGCGACTCCAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
* * *
156295 AAGATTCGCTGCCTTCAGATTTAATCTGTTCCACTGCAACGCCAAAGAAATAAGATTCGCTTCCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
*
156360 TCTGCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * * * * * *
156373 ACTTCGAC-CCCAGGAAATAAGATTCGTTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAAG
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGG
* * ** *
156437 GAAATGAGA-T---T-CATTCAGCTTTAATC---T--ACTGTGAC-CCCAGCGAAATAAGATTCG
61 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGATTCG
* *
156491 CTACCTTCAGCTTTAATCTATTCC
125 CTGCCTTCAGCTTTAATCTGTTCC
* * * *
156515 ACTGCAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAATCTACTACGACGCTAGGGAAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
** * * * * * * *
156580 AAGATTTACTACCTTCAACTTGAATCTGTTCCACTGCAACGCGAGGGAAATGAGATTCGCTACCT
66 AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
*
156645 TTAGCTTTAATC---T--
131 TCAGCTTTAATCTGTTCC
* * * * * * * *
156658 ACTGCGACG-CTAGGAAAATAAGATTTGATGCCTTCAGTTTTCATCTACTCCGATC-CCAAGGAA
1 ACTGCAACGCCAAGG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGA-CGCCAGGGAA
* * * * * * *
156721 ATAAGATTTGTTGCCTTCAGCTTTAATCTATTCCACTACAACGCTAAAGAAATGAGATT
64 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
156780 ATTGGCTTTA
Statistics
Matches: 6968, Mismatches: 1631, Indels: 912
0.73 0.17 0.10
Matches are distributed among these distances:
136 70 0.01
137 38 0.01
138 443 0.06
139 12 0.00
140 32 0.00
141 157 0.02
142 197 0.03
143 1494 0.21
144 100 0.01
145 47 0.01
146 67 0.01
147 377 0.05
148 3207 0.46
149 129 0.02
150 106 0.02
151 6 0.00
152 7 0.00
153 277 0.04
154 8 0.00
155 9 0.00
156 1 0.00
157 6 0.00
158 5 0.00
159 5 0.00
160 12 0.00
161 1 0.00
162 1 0.00
163 34 0.00
164 9 0.00
165 6 0.00
166 6 0.00
167 4 0.00
168 74 0.01
169 14 0.00
170 7 0.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (148 bp):
ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAAT
AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
TCAGCTTTAATCTGTTCC
Found at i:149203 original size:44 final size:44
Alignment explanation
Indices: 149095--149265 Score: 150
Period size: 46 Copynumber: 3.8 Consensus size: 44
149085 TTCCACTGCA
* * *
149095 ACGCCAGGGAAATGAGATTTGTTGCCTTCAGC-TTT-AATCTACT
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTTCAAT-TACT
* * *
149138 ACGACGCTAGAGAAATAAGATTTGCTGCCTTCTGCTTTTCCATTACT
1 ACG-C-CAAG-GAAATAAGATTTGCTGCCTTCAGCTTTTCAATTACT
* * * *
149185 ACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAA-TACG
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT--TC-AATTACT
* *
149231 ACGCCAAGGAAATAAGATTTGCTTCTTTCAGCTTT
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT
149266 AATTTGTTCC
Statistics
Matches: 102, Mismatches: 18, Indels: 13
0.77 0.14 0.10
Matches are distributed among these distances:
43 3 0.03
44 24 0.24
45 5 0.05
46 57 0.56
47 11 0.11
48 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
ACGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTTCAATTACT
Found at i:149265 original size:90 final size:90
Alignment explanation
Indices: 149095--149265 Score: 245
Period size: 90 Copynumber: 1.9 Consensus size: 90
149085 TTCCACTGCA
* * * * * *
149095 ACGCCAGGGAAATGAGATTTGTTGCCTTCAGCTTTAATCTACTACGACGCTAGAGAAATAAGATT
1 ACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAATACGACGCAAGAGAAATAAGATT
*
149160 TGCTGCCTTCTGCTTTTCCATTACT
66 TGCTGCCTTCAGCTTTTCCATTACT
149185 ACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAATACGACGCCAAG-GAAATAAGAT
1 ACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAATACGACG-CAAGAGAAATAAGAT
* *
149249 TTGCTTCTTTCAGCTTT
65 TTGCTGCCTTCAGCTTT
149266 AATTTGTTCC
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 68 0.96
91 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (90 bp):
ACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCTAATACGACGCAAGAGAAATAAGATT
TGCTGCCTTCAGCTTTTCCATTACT
Found at i:151294 original size:44 final size:45
Alignment explanation
Indices: 150561--152240 Score: 281
Period size: 51 Copynumber: 34.8 Consensus size: 45
150551 CCACTGCAAT
* * * * * *
150561 GCCAAGAAAATGAGATTCGCTGCATTCAGCTTTAACCTACTGCGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTATCC-ACTACGAC
* ** * * * *
150607 GCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
** * * * *
150658 GCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTATTACGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
** * * * ** *
150704 GTTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* * * * *
150755 GCCAAAGG-AATAAGATTCGCTTCCTTCAGCTTTAATCTACTGCAAC
1 GCC-AAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * * * *
150801 ACCAGGGAAATGAGATTCGCTGCCTTCAAG-TTTAATCTACTACGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTC-AGCTTT-ATCCACTACGAC
* * * * * * *
150847 -TCTAGGTAAATAAGATTCGTTGCCTTTAGCTTTAATCTGTTCCACTGCAAC
1 GCCAAGG-AAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* ** * * *
150898 GCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTACTACGAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * * * * * * *
150944 GCCAGGGAAATAAAATTTACTACATTCAGCTTTAATCTGTTCCACTGCAAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* * ** **
150995 GCCAGGGAAA-AGAGATTTGCTGTCTTCAGCTTTAATCTGCTGTGAC
1 GCCAAGGAAATA-AGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * * * *
151041 GCTAGGGAAATAAGATTTACTACCTTCAGCTTTAATTTGTTCCACTACAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* ** * * *
151092 G-CAATCGAAATAAGATTCACTGCCTTCTGTTTTAATCTACTACGAC
1 GCCAA-GGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
** *** * *
151138 GCCGGGGAAATAAGATTCATTG-CTTCAGCTTTAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* * * * *
151188 GCCAGGGAAATGAGGTTTGTTGCCTTCAGCTTTAATCTACTACGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * *
151234 G-CTAGAGAAATAAGATTTGCTGCCTTCTGCTTT-TCCACTACTAC
1 GCCAAG-GAAATAAGATTTGCTGCCTTCAGCTTTATCCACTACGAC
* * * *
151278 GCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * * *** *
151324 GCCAAGAAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* * * * * * *
151375 GCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAAT
1 GCCAAGGAAAT-AAGATTTGCTGCCTTCAGCTTT-ATC----C-ACTACGAC
* * * * * * *
151426 GCTAAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTA-TCCACTACGAC
* * * * *
151472 GTCAGGGAAATAAGATTTGGTGCCTT-ATGCTTGAATCTGTTCTACTACAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCA-GCTT-TATC----C-ACTACGAC
* * * * * *
151523 TCCAAGGAAATAAAATTTGTTGCCTTCAACTTTAATCAACTGCGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * * * *
151569 GACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-A-----TCCACTACGAC
* * * * * * * * *
151620 ACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATCTAATGCAAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
** * * *
151666 GCCAAGGAAATAAGATTTGCTGCCTTCAATTTTAATTTGATCCACTGCAAT
1 GCCAAGGAAATAAGATTTGCTGCCTTC-A----GCTTT-ATCCACTACGAC
* ** * * * * *
151717 GCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGC--T--T-T-ATCCACTACGAC
* * * * * * * * *
151768 ACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATCTAATGCAAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
* * *
151814 GCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATC----C-ACTACGAC
** * *
151865 GCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGC-TT--TA---TCCACTACGAC
* ** * * *
151916 GCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTAC-GAC
* * * *
151962 G-CTAGTGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAAC
1 GCCAAG-GAAATAAGATTTGCTGCCTTCAGCTTT-ATC----C-ACTACGAC
** * *
152013 GCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGC-TT--TA---TCCACTACGAC
* ** * * *
152064 GCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGAC
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTAC-GAC
* * * * * * * *
152110 GGCAACGAAATAAGATTTGTTGTCTTCAACTTTAATCAGTTCAACTGCAAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATC----C-ACTACGAC
* * * * *
152161 GCCAAGGAAATGAGATTTGCTGCCTTCAGCTTTCATCTAATGCGAT
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTT-ATCCACTACGAC
*
152207 GCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTA
1 GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTA
152241 ATTTGTTCCT
Statistics
Matches: 1220, Mismatches: 296, Indels: 237
0.70 0.17 0.14
Matches are distributed among these distances:
44 34 0.03
45 29 0.02
46 534 0.44
47 8 0.01
48 3 0.00
49 3 0.00
50 36 0.03
51 544 0.45
52 21 0.02
53 2 0.00
54 2 0.00
56 4 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (45 bp):
GCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTATCCACTACGAC
Found at i:151356 original size:90 final size:90
Alignment explanation
Indices: 151080--151356 Score: 270
Period size: 90 Copynumber: 3.0 Consensus size: 90
151070 CTTTAATTTG
* * * * * **
151080 TTCCACTACAACG-CAATCGAAATAAGATTCACTGCCTTCTGTTTTAATCTACTACGACGCCGGG
1 TTCCACTACAACGCCAA-GGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTACGACGCCAAG
* * * *
151144 GAAATAAGATTCATTGCTTCAGCTTTAATCTG
65 AAAATAAGA-T--TTGCTT---CTTTCAGCTT
* * * * * *
151176 TTCCACTGCAACGCCAGGGAAATGAGGTTTGTTGCCTTCAGCTTTAATCTACTACGACG-CTAGA
1 TTCCACTACAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTACGACGCCAAGA
* * *
151240 GAAATAAGATTTGCTGCCTTCTGCTT
66 -AAATAAGATTTGCTTCTTTCAGCTT
* *
151266 TTCCACTACTACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTAATACGACGCCAAGA
1 TTCCACTACAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTACGACGCCAAGA
151331 AAATAAGATTTGCTTCTTTCAGCTT
66 AAATAAGATTTGCTTCTTTCAGCTT
151356 T
1 T
151357 AATTTGTTCC
Statistics
Matches: 148, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
90 80 0.54
91 4 0.03
93 5 0.03
95 3 0.02
96 54 0.36
97 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (90 bp):
TTCCACTACAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTACGACGCCAAGA
AAATAAGATTTGCTTCTTTCAGCTT
Found at i:152100 original size:541 final size:539
Alignment explanation
Indices: 150265--153278 Score: 2209
Period size: 541 Copynumber: 5.6 Consensus size: 539
150255 CTATTGCTGT
* ** * * * * *
150265 GCCAGGGAAATAAGATTCATTGCCTTCAACTTTAATCTGTTCCACTACAACGGCAAGGAGATGAG
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG
* * * * * * * *
150330 ATTCGCCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATAAGATTTGCTACCTTCA
66 ATTCACTGCCTTAAGCTTTAA-----TCTACTGCGATGC-AGGGAAATAAGATTTGCTGCCTTCA
* * * *** * * *
150395 GCTTTAA--T-TT--ACTGCGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTGTT
125 GCTTTAATCTGTTCAACTACAACG-CAAGGAAATAAGA-TTTATTGCCTTCAGCTTTAATATGTT
* * * * *
150454 CCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAA-CTTT-AGCTTACTGC-GACG-CTAG
188 CCACTACAACGCTAAGGAAATAAGATTCACTGCCTT-AAGCTTTAATC-TACT-CTGACGAC-AA
* * ** * * * * * * * *
150515 GGATATAAGATTCACTGCCTTTAGCATTAATCTGTTCCACTGCAATGCCAAGAAAATGAGATTCG
249 CGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTG
* * * * * ** ** * *
150580 CTGCATTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCT
314 CTGCCTTCAGCTTTAATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTT
* * ** * * *
150645 GTTCCACTGCAACGCTTAGGAAAT-AAGATTCGATGCCTTCAGCTTTAATCTATT--AC-G--AC
379 GTTCCTCTGCAATGCCAAGGAAATGGA-ATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAAC
*** * * * * * * * * *
150704 GTTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGG-AATAA
443 GCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-TCTACTGCGATGTC-AGGGAAATAA
* * *
150768 GATTCGCTTCCTTCAGCTTTAATC---T--ACTGCAAC
502 GATTTGCTGCCTTCAACTTTAATCTGTTCAACTGCAAC
* * * * * * *
150801 ACCAGGGAAATGAGATTCGCTGCCTTCAAG-TTTAATC---T--ACTACGAC-TCTAGGTAAATA
1 GCCAAGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATA
** * * * * ** *
150859 AGATTCGTTGCCTTTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTT
64 AGATTCACTGCCTTAAGCTTTAATC---T--ACTGCGATGC-AGGGAAATAAGATTTGCTGCCTT
* * * * * * * *
150924 CAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAAATTTACTACATTCAGCTTTAATCTGT
123 CAGCTTTAATCTGTTCAACTACAACG-CAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGT
* * * * ** * * * * **
150984 TCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGTCTTCAGCTTTAATCTGCTGTGACG-CTAGG
187 TCCACTACAACGCTAAGGAAATA-AGATTCACTGCCTTAAGCTTTAATCTACTCTGACGAC-AAC
* * * ** * * * * **
151047 GAAATAAGATTTACTACCTTCAGCTTTAATTTGTTCCACTACAACG-CAATCGAAATAAGATTCA
250 GAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAA-GGAAATGAGATTTG
* * * * * ** ** *
151111 CTGCCTTCTGTTTTAATCTACTACGACGCCGGGGAAATAAGA-TT-CATTGCTTCAGCTTTAATC
314 CTGCCTTCAGCTTTAATCTAATGCGATGCCAAGGAAATAAGATTTGC-TCCCTTCAGCTTTAATT
* * * * * * * *
151174 TGTTCCACTGCAACGCCAGGGAAAT-GAGGTTTGTTGCCTTCAGCTTTAATCTA--CTAC-G--A
378 TGTTCCTCTGCAATGCCAAGGAAATGGA-ATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAA
** * * * * * * * * * * * *
151233 CGCTAGAGAAATAAGATTTGCTGCCTTCT-GCTTT--TCCACTACTACGCCAAGGAAATGAGATT
442 CGCCGGGGAAATAAGAGTCGTTGGCTT-TAGCTTTAGTCTACTGCGATGTCAGGGAAATAAGATT
* * * *
151295 CGCTGCCTTCAGCTTTAATC---T-AA-TACGAC
506 TGCTGCCTTCAACTTTAATCTGTTCAACTGCAAC
* * * * * * * *
151324 GCCAAGAAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATGCCAAGGAAATGTA
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAAT-AA
* * * * * * * * *
151389 -ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTT
65 GATTCACTGCCTTAAGCTTTAA-----TCTACTGCGATGC-AGGGAAATAAGATTTGCTGCCTTC
* * * ** * *
151453 AGCTTTAGTCTATTGCGACGT-C-A-G---GGAAATAAGATTTGGTGCCTT-ATGCTTGAATCTG
124 AGCTTTAATCTGTT-CAAC-TACAACGCAAGGAAATAAGATTTATTGCCTTCA-GCTTTAATATG
* * * * *** * *
151511 TTCTACTACAACTCCAAGGAAATAAAATTTGTTGCCTTCAA-CTTTAATCAACTGC-GACGACAG
186 TTCCACTACAACGCTAAGGAAATAAGATTCACTGCCTT-AAGCTTTAATCTACT-CTGACGACAA
* * * * * * *
151574 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTG
249 CGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTG
* * * **
151639 CTACCTTCAGCTTTAATCTAATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAATTTTAATTT
314 CTGCCTTCAGCTTTAATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTT
* * * * ** * * *
151704 GATCCACTGCAATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACA
379 GTTCCTCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAACG
*** * * * * ** * * * * * *
151769 CCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATCTAATGCAATGCCAAGGAAATAAGATTTGC
444 CCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGATGTCAGGGAAATAAGATTTGC
*
151834 TGCCTTCAACTTTAATCAGTTCAACTGCAAC
509 TGCCTTCAACTTTAATCTGTTCAACTGCAAC
*** * *
151865 GCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAG
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG
* * * *
151930 ATTCACTGCCTTAAGGTTTAATCTACT-CTGACGCTAGTGAAATAAGATTTGCTGCCTTCAACTT
66 ATTCACTGCCTTAAGCTTTAATCTACTGC-GATGC-AGGGAAATAAGATTTGCTGCCTTCAGCTT
* *
151994 TAATCAGTTCAACTGCAACGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACT
129 TAATCTGTTCAACTACAACG-CAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACT
* * *
152059 GCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACTCTGACGGCAACGAAATAAG
193 ACAACGCTAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTCTGACGACAACGAAATAAG
* * *
152124 ATTTGTTGTCTTCAACTTTAATCAGTTCAACTGCAATGCCAAGGAAATGAGATTTGCTGCCTTCA
258 ATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCA
*
152189 GCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTGTTCCTCTG
323 GCTTTAATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTGTTCCTCTG
*
152254 CAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGCCGGGGAAA
388 CAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAACGCCGGGGAAA
*
152319 TAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGATGTTAGGGAAATAAGATTTGCTGCCTTCAA
453 TAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGATGTCAGGGAAATAAGATTTGCTGCCTTCAA
* * * * *
152384 TTTTAATTTGATCCACTGCAAT
518 CTTTAATCTGTTCAACTGCAAC
* ** * * * *
152406 GCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACGCCAACGAAAAAAG
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG
* * * * * *
152471 ATTCGCTACCTTCAGCTTGAATATACTGCGATGACAGGGAAATAAGATTCGCTGCCTTCAGCTTT
66 ATTCACTGCCTTAAGCTTTAATCTACTGCGATG-CAGGGAAATAAGATTTGCTGCCTTCAGCTTT
* *
152536 AATCTGTTCTACTACAATGTCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTA
130 AATCTGTTCAACTACAACG-CAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTA
* *
152601 CAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACTCTGACGGCAACGAAATAAGA
194 CAACGCTAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTCTGACGACAACGAAATAAGA
*
152666 TTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAG
259 TTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAG
* * *
152731 CCTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCACCCTTCAGCTTTAATTTGTTCCTCTGC
324 CTTTAATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTGTTCCTCTGC
152796 AATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAACGCCGGGGAAAT
389 AATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAACGCCGGGGAAAT
* * **
152861 AAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTGC
454 AAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGATGTCAGGGAAATAAGATTTGCTGCCTTCAAC
* *
152926 TTTACTCTGTTCTACTGCAAC
519 TTTAATCTGTTCAACTGCAAC
* * * *
152947 GGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAATAAG
1 GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG
* * * * * * *
153012 ATTCACCGTCTTTAGCTTTAGTCTATTGCGGTGCCAGGGAAATAAGA-TTCCTTGCCTTCAGCTT
66 ATTCACTGCCTTAAGCTTTAATCTACTGCGATG-CAGGGAAATAAGATTTGC-TGCCTTCAGCTT
* * * *** **
153076 TAATCTGTTCCACTACAACAGCAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTCCACT
129 TAATCTGTTCAACTACAAC-GCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACT
* * ** * * * * **
153141 GCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTGTGACGACATGGAAATAA-
193 ACAACGCTAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTCTGACGACAACGAAATAAG
* ** * * * * *
153205 AGTTTGCTACCTTCAGTTTTATTCTGTTCCACTGCAACGCCAAGGAAATAAGATTTACTGCCTTC
258 A-TTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTC
*
153270 AACTTTAAT
322 AGCTTTAAT
153279 ATGTTCCACT
Statistics
Matches: 2033, Mismatches: 365, Indels: 155
0.80 0.14 0.06
Matches are distributed among these distances:
522 6 0.00
523 68 0.03
524 1 0.00
526 3 0.00
527 1 0.00
528 218 0.11
529 66 0.03
530 106 0.05
531 240 0.12
532 5 0.00
533 4 0.00
534 32 0.02
535 6 0.00
536 110 0.05
537 2 0.00
539 1 0.00
540 9 0.00
541 1151 0.57
542 4 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (539 bp):
GCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG
ATTCACTGCCTTAAGCTTTAATCTACTGCGATGCAGGGAAATAAGATTTGCTGCCTTCAGCTTTA
ATCTGTTCAACTACAACGCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTACA
ACGCTAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTCTGACGACAACGAAATAAGATT
TGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGCT
TTAATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTGTTCCTCTGCAA
TGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAACGCCGGGGAAATAA
GAGTCGTTGGCTTTAGCTTTAGTCTACTGCGATGTCAGGGAAATAAGATTTGCTGCCTTCAACTT
TAATCTGTTCAACTGCAAC
Found at i:153377 original size:541 final size:536
Alignment explanation
Indices: 151575--153650 Score: 2143
Period size: 541 Copynumber: 3.8 Consensus size: 536
151565 CGACGACAGG
* * * * * * *
151575 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGC
1 GAAATAAGATTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGC
* * * *
151640 TACCTTCAGCTTTAATCTAATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAATTTTAATTTG
66 TGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCT--CTTC-ACTTTAATTTG
* * * * ** * * **
151705 ATCCACTGCAATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACAC
128 -TTCTCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGC
*** * * * * ** * * * * * * *
151770 CAAAGAAATGAGATTTGCTACCTTCAGCTTTAATCTAATGCAATGCCAAGGAAATAAGATTTGCT
192 CGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGCT
* * ***
151835 GCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAA
257 GCCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA
* * * *
151900 TATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGACGC
322 TCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTGC-GATGC
* * * * * *
151964 TAGTGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATAAGAT
386 CAGGGAAATAAGA-TTCCTGCCTTCAGCTTTAATCTGTTCAACTACAACGCCAAGGAAATAAGAT
152029 TTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGG
450 TTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGG
152094 TTTAATCTACTCTGACGGCAAC
515 TTTAATCTACTCTGACGGCAAC
* *
152116 GAAATAAGATTTGTTGTCTTCAACTTTAATCAGTTCAACTGCAATGCCAAGGAAATGAGATTTGC
1 GAAATAAGATTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGC
152181 TGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTG
66 TGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCT--CTTCA-CTTTAATTTG
152246 TTCCTCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGC
128 TT-CTCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGC
* *
152311 CGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGATGTTAGGGAAATAAGATTTGCT
192 CGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGCT
* * * * * ** * *
152376 GCCTTCAATTTTAATTTGATCCACTGCAATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAA
257 GCCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA
* * * * * * * *
152441 TCTGTTCCACTGCAACGCCAACGAAAAAAGATTCGCTACCTTCAGCTTGAATATACTGCGATGAC
322 TCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTGCGATGCC
* * *
152506 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGTCAAGGAAATAAGATT
387 AGGGAAATAAGATTC-CTGCCTTCAGCTTTAATCTGTTCAACTACAACGCCAAGGAAATAAGATT
*
152571 TATTGCCTTCAGCTTTAATATGTTCCACTACAACGCTAAGGAAATAAGATTCACTGCCTTAAGGT
451 TATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGT
152636 TTAATCTACTCTGACGGCAAC
516 TTAATCTACTCTGACGGCAAC
152657 GAAATAAGATTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGC
1 GAAATAAGATTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGC
* *
152722 TGCCTTCAGCCTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCACCCTTCAGCTTTAATTTG
66 TGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTG--CTCTTCA-CTTTAATTTG
*
152787 TTCCTCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAACGC
128 TT-CTCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGC
*
152852 CGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGTT
192 CGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGCT
** * * * *
152917 GCCTTCTGCTTTACTCTGTTCTACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAA
257 GCCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA
* * * * * * * *
152982 TCTGTTCTACTGAAACGCCAAGGAAATAAGATTCACCGTCTTTAGCTTTAGTCTATTGCGGTGCC
322 TCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTGCGATGCC
* * *
153047 AGGGAAATAAGATTCCTTGCCTTCAGCTTTAATCTGTTCCACTACAACAG-CAAGGAGATGAGAT
387 AGGGAAATAAGATTCC-TGCCTTCAGCTTTAATCTGTTCAACTACAAC-GCCAAGGAAATAAGAT
*** ** * ** * * *
153111 TCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGC
450 TTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGG
* * * **
153176 TTTAATTTACTGTGACGACATG
515 TTTAATCTACTCTGACGGCAAC
** ** * * * * *
153198 GAAATAA-AGTTTGCTACCTTCAGTTTTATTCTGTTCCACTGCAACGCCAAGGAAATAAGATTTA
1 GAAATAAGA-TTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTG
* * * * * * *
153262 CTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGA-TT-CTCTGC-CTTTAAC
65 CTGCCTTCAGCTTT--CA---TCTAATGCGATGCCAAGGAAATAAGATTTGCTCTTCACTTTAA-
* * * * * * * * *
153324 TTTAGCTT-ACTGCGACGCCAGGGATAT-AAGATTCACTGCCTTT-AGCGTTAATCTGTTCCACT
124 TTT-G-TTCTCTGCAATGCCAAGGAAATGGA-ATTCGCTG-CTTTCAGCTTTAATCTATTCCACT
* ** * * * * * **
153386 GTAATGCCAAGAAAATGAGATTCGCT-GCATTAAGCTTTAACCTACTGCGACG-CTAGGGAAATA
185 GCAATGCCGGGGAAATAAGAGTCGTTGGC-TTTAGCTTTAGTCTACTGCGACGTC-AGGGAAATA
** * ** ** *
153449 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTAGGAAATAAGATTCGATGCCTT
248 AGATTTGCTGCCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* ** * * ** *
153514 CAGCTTTAATCTATT--A---CAACGTTAGGGAAATGAGATTTGCTGCCTTCAGCTTTAATTTGT
313 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTAAGCTTTAA-----
* * * * * *
153574 TCCACTGTGATGCCAAAGG-AATAAGATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGC
373 TCTACTGCGATGCC-AGGGAAATAAGATTC-CTGCCTTCAGCTTTAATCTGTTCAACTACAACGC
**
153638 CGGGGAAATAAGA
436 CAAGGAAATAAGA
153651 GTCGTTGGCT
Statistics
Matches: 1297, Mismatches: 209, Indels: 58
0.83 0.13 0.04
Matches are distributed among these distances:
536 28 0.02
539 1 0.00
540 17 0.01
541 1208 0.93
542 15 0.01
543 4 0.00
545 2 0.00
546 22 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (536 bp):
GAAATAAGATTTGCTGTCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTTGC
TGCCTTCAGCTTTCATCTAATGCGATGCCAAGGAAATAAGATTTGCTCTTCACTTTAATTTGTTC
TCTGCAATGCCAAGGAAATGGAATTCGCTGCTTTCAGCTTTAATCTATTCCACTGCAATGCCGGG
GAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGCTGCCT
TCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
TTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTAAGCTTTAATCTACTGCGATGCCAGGG
AAATAAGATTCCTGCCTTCAGCTTTAATCTGTTCAACTACAACGCCAAGGAAATAAGATTTATTG
CCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAAT
CTACTCTGACGGCAAC
Found at i:153600 original size:245 final size:242
Alignment explanation
Indices: 147159--156694 Score: 2152
Period size: 245 Copynumber: 39.3 Consensus size: 242
147149 ACGATGCAAG
* * *
147159 GGAAATAAGATTC-ACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCATGGAAATAACATTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGATT-
* * * * * * *
147223 TCCGCCTTCAGCTTT-A--G-TCTACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAG-TGT
60 TCTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCT-T
** * * **
147283 TAATCTGTTCCACTGCAATGCCAAGGAAATGTGATTCGCTGCCTTTAGTTTTAATCTACTAAGAC
124 TAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGCGAC
* * * * * * * * ****
147348 GACAGAGAAATAATATTTGTTGGCTTCAACTTTAATTTGTTCTACTGCAAAATTAA
188 G-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * ** *
147404 GAAAATAAGATTCG-TTTCCTTTAGCTTTAATCTACTGCGACGTCAATGAAATAAGATTCGCTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTGC
* * * * * * *
147468 CTTCAGCTTTAATCTGTTCCACTAC-AATGCCAAAGAAATGAGATTCACTGCCTTCAACTTTAAT
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * *
147532 C---T--ACTGTGAA-GCC-AGAGAAATAAGATTCACCGCTTTCAA-CTTTAATCTACTGCGACG
128 CTGTTCCACTG-CAATGCCAAG-GAAATAAGATTCGCTGC-TT-AAGCTTTAATCTACTGCGACG
* * * *
147589 CCAGGTAAATAAGATTCGCTTCCTTTAGCTTTAATCTGTTCCACT-CGAATGCCAA
189 -CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGC-AACGCCAA
* * * *** * * * * *
147644 GAAAATGAGATTCG-CTGCCTTCAGCTTTAATCTACTGTGACGTCAGGAAAATAAGATTACTTCT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTTCTGCC
* * * * * **
147708 TTCAGCTTTAATATGTTCCAGTGC-AACGCCAGGGAAATGAGATTCGATGCCTTTAAATTTAATC
66 TTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAATC
* * * * * * * * *
147772 TAG----A--GCGACGCTAGGGAAAAAAG-TTTGCTGCCGTCAGCTTTAATTTCTTCCACTGCAA
129 T-GTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAA--TC-T--ACTGCGA
* * * * * **
147830 TGCAATGGAAATGAGATTCGCTGCCTTTAGCTTTAATCTATTCCACTGCAACGGAAA
187 CGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
147887 TGAAATAAGATTC-ACTGCCTTCAGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTGC
* * * * * * * **
147951 CTTCAACTTTAATCTATTCCACTGC-AACACCAAGGAAATAAGATTTGCTACGTGCAGCTTTAAT
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * ** * *
148015 C---T--ACTGCGATGCCAGGGAAATAAAATTTACTGCCTTTAA-CTTTAATTTGTTCCACTGCA
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-C-TTAAGCTTTAA-----TCTACTGCG
* * * * * *
148074 ATGCCAGGGAAATGATATTTC-CTGCCTTTAGCTTTAATC---T--ACTGCGACG-CTA
186 ACG-CAGGGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * *
148126 GAGAAATAAGATTTG-TTGCCTCCTA-CTTTAATCTGTTCCACTGCAACACTAAGGAAATGAGAT
1 G-GAAATAAGATTCGACTGCCTTC-AGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGAT
* * * * * * ** * * * *
148189 TTGCTACCTTTAGCTTTAA----TCTAATGTGACGTTAAGGAAATAAGATTTGTTGCCTTCAGCT
59 TT-CTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCT
* * * ** * *
148250 TTAATTTGTTCCACTACAACGCCAAGGAAAGGAGATTCGCTGTCATCAGCTTTAATCTGTTCCAC
123 TTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATC---T--AC
* * * * * * * *
148315 TGCAACGCCAGGGAAATAAGATTCACTGGCTTTATCTTT-A---G-TCTACTGCGACGCCAG
182 TGCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * ** * * *
148372 GGAAATAAGGTTTG-CTGCCTTCAGTTTTAATCTGTTCCGCTGCAATACCAAGGAGATGAGA-TT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCT-AT----TACAACGCCAGGGAAATAAGATTT
* * * * * * * ** * *
148435 CGTTACCTTCAGCTTTAA----TCTACTGCGACGCTAGGGAAATAATATTTACTACCTTCAGCTT
61 C--TGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTT
* * * * * * ***
148496 TATTCTGTTCCACTACAATGCTAGGGAAATGAA-ATTTGTTGCCTCCTGCTTTAATCTACTGCGA
124 TAATCTGTTCCACTGCAATGCCAAGGAAAT-AAGATTCGCTG-CTTAAGCTTTAATCTACTGCGA
* * * ** * **
148560 CGCTAGGGAAATAAGATTTGTTACCGCCAGCTTTAATCTGTTCCACTGCGACTACAA
187 CGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
** * * * * * * * * *
148617 AAAAATGAGATTC-TCTGGCTTCAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTGC
* * * * * * * *
148681 CTTCTGCTTTAATCTATTCCACTAC-AACGCTAAGGAAATAAGACTCGCTGCCTTCATCTTTAAT
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * *
148745 C---T--ACTGCGATGCCAGGGAAATAAGATTTGCTGCATTCAGCTTTAATCTATTCTACTGCAA
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTGC-TTAAGCTTT-A---A-TCTACTGCGA
* ** * * * * * *
148805 TGCAAATGAAATGAGATTCACTGCCTTCAACTTGAATC---T--ACTGCGACGCCAG
187 CGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
148857 GGAAATAAGATTTG-TTGCCTTTAACTTTAATCTGTTCCACTACAACGCCAAGGAAATAAGATTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATC---T--ATTACAACGCCAGGGAAATAAGATT-
* * * * *
148921 ACTTCCTTCAGCTTTAA-T-TT--ACTGCGCCAG-C-AGAGAAATAAGATTCGCTACCTTTAGCT
60 TCTGCCTTCAGCTTTAATTGTTCCACTGCG-AAGCCAAG-GAGATAAGATTCGCTGCCTTTAGCT
** * * * *
148980 TTAATCTGTTCCACTGCAACACTAAGGAAATGAGATTCGCTGCCTTCAGCTTTAATCTGCTGCGA
123 TTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGCGA
* *** * * *
149045 TGCCAGGGAAATAAGATTTATTGGCTTCAACTTTAATCTGTTCCACTGCAACGCCAG
187 CG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * *
149102 GGAAATGAGATTTG-TTGCCTTCAGCTTTAATCTACTACGACGCTAGAGAAATAAGATTTGCTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
* * * * * * * * *
149166 CTTCTGC-----TT-TTCCATTACTACGCCAAGGAAATGAGATTCGCTGCCTTCAACTTTAATCT
65 CTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAATCT
** * * * * * ** *
149225 AAT--AC-G--ACGCCAAGGAAATAAGATTTGCTTCTTTCAGCTTTAATTTGTTCCACTGTAATG
130 GTTCCACTGCAATGCCAAGGAAATAAGATTCGCTGC-TTAAGCTTTAA-----TCTACTGCGACG
* * * * * * *
149285 CCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCTAA
189 -CAGGGAAAT-AAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * *
149340 GGAAATAAGATTCG-CTGGCTTTAGCTTTAGTCTATTGCGACGTCAGGGAAATAAGATTTGGTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
* * * * * * * * * * *
149404 CTTCTGCTTTAATCTATTCTACTAC-AACTCCAAGGAAATAAAATTTGCTGCCTTCAACATTAA-
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * * * *
149467 ----TCAACTGCGACGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAA
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATC---T--ACTGCGA
* ** * * * * *
149528 CACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAATC---T--AATGCGACGCCAA
187 C-GCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * ** * * * * * * **
149580 GGAAATAAGATTTG-CTACCTTCAATTTTAATTTGATCCACTGCAATGTCAAGAAAATGGGATTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCT-AT----TACAACGCCAGGGAAATAAGATT-
* * * * * * *
149644 GCTGCCGTCAGCTATAATCTGTTCCACTGC-AACGCCAACGAAATAAGATTCGCTACCTTCAGCT
60 TCTGCCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCT
* * * * * *
149708 TGAATC---T--ACTACGATGACAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCGGTCCACT
123 TTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATC--T--ACT
* * * * *** * *
149768 ACAATGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAA
183 GCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * *
149829 GGAAATAAGATTC-ACTGCCTTAAGGTTTAATCTACT-CTAACGCCAGCGAAATAAGATTTGCTG
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTAC-AACGCCAGGGAAATAAGATTT-CTG
* * * * * * * *
149892 CCTTCAACTTTAATCAGTTCAACTAC-AACGCCAAGGAAATGAGATTTGCTGCCTTTAGCTTTCA
64 CCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAA
* * * * * * *
149956 -C----CTAATGCGATGCCAAGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCA
127 TCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAA-----TCTACTGCG
* * * * * **
150016 ATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCGACGCCGG
186 ACG-CAGGGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * * *
150074 GGAAATAAGAGTCG-TTGGCTTTAGCTTTAGTCTACTGCAACGTCAGGGAAACAAGATTTGTTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
* * * * ** * * *
150138 CTTCTGCTTTTACTCTGTTCTACTGC-AATGACAGAAAAAATAAGATTCACTGCCTTCAGCTTTA
65 CTTCAGC-TTTAAT-TGTTCCACTGCGAA-GCCA-AGGAGATAAGATTCGCTGCCTTTAGCTTTA
* * * * * * * * * *
150202 ATCTGTTCTACTGAAACGCCAAGGAAATAAGATTCACCGCCTTTACCTTTAGTCTATTGCTG-TG
126 ATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGC-GACG
** * * *
150266 CCAGGGAAATAAGATTCATTGCCTTCAACTTTAATCTGTTCCACTACAACGGCAA
189 -CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * *
150321 GGAGATGAGATTCG-CCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATAAGATTT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAA-----TCTATTACAACGCCAGGGAAATAAGATTT
* * * * * * * *
150385 GCTACCTTCAGCTTTAA-T-TT--ACTGCGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTT
61 -CTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGA-TTCGCTGCCTTTAGCTT
* * *
150445 TAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAA-CTTT-AGCTTACTGCG
124 TAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTT-AAGCTTTAATC-TACTGCG
* * * * *
150508 ACGCTAGGGATATAAGATTCACTGCCTTTAGCATTAATCTGTTCCACTGCAATGCCAA
186 ACGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * *
150566 GAAAATGAGATTCG-CTGCATTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGG
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTGC
* ** * * *
150630 CTTCAGGTTTAATCTGTTCCACTGC-AACGCTTAGGAAATAAGATTCGATGCCTTCAGCTTTAAT
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * ** * * * * *
150694 CTATT--AC-G--ACGTTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCCACTGTGA
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAA-----TCTACTGCGA
* * * * *
150754 TGCCAAAGG-AATAAGATTCGCTTCCTTCAGCTTTAATC---T--ACTGCAACACCAG
187 CG-C-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
150806 GGAAATGAGATTCG-CTGCCTTCAAG-TTTAATCTACTACGACTCTAGGTAAATAAGA-TTCGTT
1 GGAAATAAGATTCGACTGCCTTC-AGCTTTAATCTATTACAACGCCAGGGAAATAAGATTTC--T
* * * * * *
150868 GCCTTTAGCTTTAATCTGTTCCACTGC-AACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTA
63 GCCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTA
* * * * ** * *
150932 ATC---T--ACTACGATGCCAGGGAAATAAAATTTACTACATTCAGCTTTAATCTGTTCCACTGC
126 ATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTGC-TTAAGCTTTAATC---T--ACTGC
* * * * ** * *
150992 AATGCCAGGGAAA-AGAGATTTGCTGTCTTCAGCTTTAATCTG-----CTGTGACGCTAG
185 GACG-CAGGGAAATA-AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * **
151046 GGAAATAAGATT-TACTACCTTCAGCTTTAATTTGTTCCACTACAACGCAATCGAAATAAGATTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAA-----TCTATTACAACGCCAGGGAAATAAGATT-
* * * * * * ** * ** *
151110 ACTGCCTTCTGTTTTAA----TCTACTACGACGCCGGGGAAATAAGATTCATTG-CTTCAGCTTT
60 TCTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTTT
* * * * * * * *
151170 AATCTGTTCCACTGCAACGCCAGGGAAATGAGGTTTGTTGCCTTCAGCTTTAATCTACTACGACG
125 AATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGCGACG
* * * * *
151235 CTAGAGAAATAAGATTTGCTGCCTTCTGC-----T-T-TTCCACTACTACGCCAA
189 C-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
151283 GGAAATGAGATTCG-CTGCCTTCAGCTTTAATCTAATACGACGCCAAGAAAATAAGATTTGCTTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
* * * * * * *
151347 TTTCAGCTTTAATTTGTTCCACTG-TAATGCCAAGGAAATGTA-ATTCGCTGTCGTCAGCTTTAA
65 CTTCAGCTTTAA-TTGTTCCACTGCGAA-GCCAAGGAGAT-AAGATTCGCTGCCTTTAGCTTTAA
* * * * *
151410 TCTGTTCTACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTTAGCTTTAGTCTATTGCGACGTC
127 TCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCT-GCTTAAGCTTTAATCTACTGCGACG-C
* * * * * *
151475 AGGGAAATAAGATTTGGTGCCTT-ATGCTTGAATCTGTTCTACTACAACTCCAA
190 AGGGAAATAAGATTCGCTGCCTTCA-GCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * * *
151528 GGAAATAAAATTTG-TTGCCTTCAACTTTAATCAACTGCGACGACAGGGAAATAAGATTCGCTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTGC
* * * * * * *
151592 CTTCAGCTTTAATCTGTTCCACTGC-AACACCAAAGAAATGAGATTTGCTACCTTCAGCTTTAAT
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * *
151656 C---T--AATGCAATGCCAAGGAAATAAGATTTGCTGCCTTCAA-TTTTAATTTGATCCACTGCA
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTT-AAGCTTT-A----ATCTACTGCG
* * * ** * * *
151715 ATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCACTGCAACACCAA
186 ACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * *
151773 AGAAATGAGATTTG-CTACCTTCAGCTTTAATCTAATGCAATGCCAAGGAAATAAGATTTGCTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
* * * * *** *
151837 CTTCAACTTTAATCAGTTCAACTGC-AACGCCAAGGAAATAAGATTTATTGCCTTCAGCTTTAAT
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * *
151901 ATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGACGCT
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGC-GACGC-
* * * * *
151965 AGTGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAA
190 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
152018 GGAAATAAGATT-TATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGATT-
* * * * * * * * * * * * *
152082 ACTGCCTTAAGGTTTAA----TCTACT-CTGACGGCAACGAAATAAGATTTGTTGTCTTCAACTT
60 TCTGCCTTCAGCTTTAATTGTTCCACTGC-GAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTT
* * * * * * * *
152142 TAATCAGTTCAACTGCAATGCCAAGGAAATGAGATTTGCTGCCTTCAGCTTTCATCTAATGCGAT
124 TAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGCGAC
* * * * * *
152207 GCCAAGGAAATAAGATTTGCTCCCTTCAGCTTTAATTTGTTCCTCTGCAATGCCAA
188 G-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * *
152263 GGAAAT-GGAATTCG-CTGCTTTCAGCTTTAATCTATTCCACTGCAATGCCGGGGAAATAAGA-G
1 GGAAATAAG-ATTCGACTGCCTTCAGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGATT
* * * * ** * * * * **
152325 TCGTTGGCTTTAGCTTT-A--G-TCTACTGCGATGTTAGGGAAATAAGATTTGCTGCCTTCAATT
60 TC--TGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCT
* * * ** * * *
152386 TTAATTTGATCCACTGCAATGCCAAGAAAATGGGATTCGCTGCCGTCAGCTATAATCTGTTCCAC
123 TTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATC---T--AC
* ** * * * * * * * *
152451 TGCAACGCCAACGAAAAAAGATTCGCTACCTTCAGCTTGAA--T-AT--ACTGCGATGACAG
182 TGCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * *
152508 GGAAATAAGATTCG-CTGCCTTCAGCTTTAATCTGTTCTACTACAATGTCAAGGAAATAAGATTT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAA-----TCTATTACAACGCCAGGGAAATAAGATTT
* * * * * * *
152572 ATTGCCTTCAGCTTTAATATGTTCCACTAC-AACGCTAAGGAAATAAGATTCACTGCCTTAAGGT
61 -CTGCCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCT
* * * * * *
152636 TTAATC---TACTCTG--ACGGCAACGAAATAAGATTTGCTGTCTTCAA-CTTTAATCAGTTCAA
123 TTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTT-AAGCTTTAATC---T--A
* * * * * * * * *
152695 CTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGCCTTCATC---T--AATGCGATGCCAA
181 CTGCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * *
152753 GGAAATAAGATTTGCAC--CCTTCAGCTTTAATTTGTTCCTCTGCAATGCCAAGGAAAT-GGAAT
1 GGAAATAAGATTCG-ACTGCCTTCAGCTTTAA--T-CT-AT-TACAACGCCAGGGAAATAAG-AT
* * * ** * * * *
152815 TCGCTGCTTTCAGCTTTAATCTATTCCACTGC-AACGCCGGGGAAATAAGAGTCGTTGGCTTTAG
59 T-TCTGCCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAG
* * * * * * * ** *
152879 CTTT-A---G-TCTACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTCT
121 CTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTA-----ATCT
* * *
152939 ACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAA
180 ACTGCGAC-GCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *** *
153003 GGAAATAAGATTC-ACCGTCTTTAGCTTTAGTCTATTGCGGTGCCAGGGAAATAAGATTCCTTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTTC-TGC
* * * * *
153067 CTTCAGCTTTAATCTGTTCCACTACAACAG-CAAGGAGATGAGATTCGCTGCCTTCAGCTTTAAC
65 CTTCAGCTTTAAT-TGTTCCACTGCGA-AGCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * * *
153131 CTGTTCCACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTGTGACGACA
128 CTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCT-GCTTAAGCTTTAATCTACTGCGACG-CA
* * * * *
153196 TGGAAATAA-AGTTTGCTACCTTCAGTTTTATTCTGTTCCACTGCAACGCCAA
191 GGGAAATAAGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * *
153248 GGAAATAAGATT-TACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGATT-
* * * * * * *
153312 TCTGCCTTTAACTTT-A--GCTT--ACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGT
60 TCTGCCTTCAGCTTTAATTG-TTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTT
* * * *
153372 TAATCTGTTCCACTGTAATGCCAAGAAAATGAGATTCGCTGCATTAAGCTTTAACCTACTGCGAC
124 TAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTGC-TTAAGCTTTAATCTACTGCGAC
* * * **
153437 GCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTA
188 GC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
** *
153493 GGAAATAAGATTCGA-TGCCTTCAGCTTTAATCTATTACAACGTTAGGGAAATGAGATTTGCTGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
* *
153557 CTTCAGCTTTAATTTGTTCCACTGTGATGCCAAAGGA-ATAAGATTCGCTG-CTTTCAGCTTTAA
65 CTTCAGCTTTAA-TTGTTCCACTGCGAAGCC-AAGGAGATAAGATTCGCTGCCTTT-AGCTTTAA
* ** * * * *
153620 TCTGTTCCACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTACTGCGACGTC
127 TCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCT-GCTTAAGCTTTAATCTACTGCGACG-C
* * * * * * *
153685 AGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACGGCAG
190 AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* *
153738 GGAAATAAGATTCG-CTGCCTTCAGCTTTAATC---T---A----A--G--AT----TTACTTAC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTTC-TGC
* * * * *
153784 ATTCAGC-TTAATCTGTTCCACTGC-AATGCCAGGGA-AAAGAGATTTGCTGCCTTCAGCTTTAA
65 CTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATA-AGATTCGCTGCCTTTAGCTTTAA
** * * * ** * * * * *
153846 TCTG-----CTGTGACGCTAGGGAAATAAGATTTACTACCTTCAGCTTTAATTTGTTCCACTACA
127 TCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCT-GCTTAAGCTTTAA-----TCTACTGCG
** * * * * *
153906 ACGCAATCGAAATAAGATTCACTGCCTTCAGTTTTAATC---T--ACTACGACGCCAG
186 ACGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * *
153959 GGAAATAAAATTC-ACTG-CTTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATGAGATTT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGATTT
* * * * * * *
154022 GTTGCCTTCAGCTTTAA----TCTACTACGATG-CTAGAGAAATAAGATTTGCTGCCTTCT-GC-
61 -CTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAG-GAGATAAGATTCGCTGCCTT-TAGCT
* * * * * * * *
154080 ----T-T-TTCCACTAG-TACGCCAAGGAAATGAGATTTGCTGCCTTCAGTTTTAATCTAATACG
123 TTAATCTGTTCCACT-GCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGCG
* * * * * * * *
154138 ACGCCAAGGAAATAAGATTTGCTTCTTTTAGCTTTAATTTGTTCCACTGTAATGCCAA
186 ACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * *
154196 GGAAATGTA-ATTCG-CTGTCGTCAGCTTTAATCTGTTCTACTGCAATGCTAAGGAAATAAGATT
1 GGAAAT-AAGATTCGACTGCCTTCAGCTTTAATCT-AT-TA---CAACGCCAGGGAAATAAGATT
* * * * * * * * * * * **
154259 CGCTGGCTTTAGCTTT-A--G-TCTATTGCGACGTCAGGGAAATAAGATTTGGTGCCTTCCGCTT
60 -TCTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTT
* * * * * * *
154320 GAATCTGTTCTACTACAACT-CCAAGGAAATAAAATTTGCTGCCTTCAA-CTTTAATCAACTGTG
124 TAATCTGTTCCACTGCAA-TGCCAAGGAAATAAGATTCGCTG-CTT-AAGCTTTAATCTACTGCG
* *
154383 ACGACAGGGAAATAAGATTCCCTGCCTTCAGCTTTAATCTGTTCCACTGCAACACCAA
186 ACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * * *
154441 AGAAATGAGATTTG-CTACTTTCAGCTTTAATCTAATGCGACGCCAAGGAAATAAGATTTGCTAC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
** * * * * ** * * * *
154505 CTTCAATTTTAATTTGATCCACTAC-AATGCCAAGAAAATGGGATTCGCTGCCGTCAACTATAAT
65 CTTCAGCTTTAA-TTGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAAT
* * *
154569 CTGTTACCTTCAGCTTGAATCTACTGCGATGACACGGAAATAAGATTCGCTGCCTTCAGCTTTAA
128 CTGTT--C--CA-C-TG---C-A-----ATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAA
* * * * * *** * *
154634 TCTGTTCTACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACA
177 -----TCTACTGCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCA
*
154699 ATGCCAA
236 ACGCCAA
* * * * * * *
154706 GGAAATAATATT-TATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAA-----TCTATTACAACGCCAGGGAAATAAGATTT
* * * * * *** *
154770 ATTGCCTTCAGCTTTAATCTGTTCTACTAC-AATGCCAAGGAAATAATATTTATTGCCTTCAGCT
61 -CTGCCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCT
* * * *** *
154834 TTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTAC
123 TTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAA-----TCTAC
* * * * * *** * * *
154899 TACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
182 TGCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
154961 GGAAATAATATT-TATTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAGTAAGA-TT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCT-AT-TAC---AACGCCAGGGAAATAAGATTT
* * * * ** * * *
155024 CATCGCCTTTACCTTT-A--G-TCTATTGCGGTGCCAGGGAAATAAGATTCGCTGCCTTCAGCTT
61 C-T-GCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTT
* * * * * * * * * *
155085 TAATCTGTTCTACTGAAACGCCAAGGAAGTAAGATTC-ATCGCCTTTACCTTTAGTCTATTGCGG
124 TAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCT-G-CTTAAGCTTTAATCTACTGCGA
* * * * * *
155149 TGCCAGGGAAATAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACTCC-A
187 CG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * *
155200 GGTAAATAAGATTCG-CTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTA
1 GG-AAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTG
* * * ** * * * *
155264 CCTTCAACTTTAA----TCTACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAAT
64 CCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGG-AGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * * *
155324 C--TACTAC-G-ACT-CC-AGGTAAATAAGATTCGCTACCTTCAA-CTTTAATCTACTACGACTC
128 CTGTTCCACTGCAATGCCAAGG-AAATAAGATTCGCT-GCTT-AAGCTTTAATCTACTGCGAC-G
* * * * * *
155382 CAGGTAAATAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACTCC-A
189 CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * *
155430 GGTAAATAAGATTCG-CTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTA
1 GG-AAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTG
* * * ** * * * *
155494 CCTTCAACTTTAA----TCTACTACGACTCC-AGGTAAATAAGATTCGCTACCTTCAACTTTAAT
64 CCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGG-AGATAAGATTCGCTGCCTTTAGCTTTAAT
* * * * * *
155554 C--TACTAC-G-ACT-CC-AGGTAAATAAGATTCGCTACCTTCAA-CTTTAATCTACTACGATGC
128 CTGTTCCACTGCAATGCCAAGG-AAATAAGATTCGCT-GCTT-AAGCTTTAATCTACTGCGACG-
* * *
155612 CAGGGAAATAAGATTCGCTGCCTTCAAG-TTTAATC---T--ACTACGACTCC-A
189 CAGGGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAA
* * *
155660 GGTAAATAAGATTCG-CTACCATT-AGCTTTAATCTGTTCCACTACAACG-CTGAGGAAATAAGA
1 GG-AAATAAGATTCGACTGCC-TTCAGCTTTAATC---T--ATTACAACGCCAG-GGAAATAAGA
* * * * * * * * ** * * *
155722 TTCACCGCCTTCAACTTTAA----TCTACTACGATGCCAGGGAAATAAGATTTACTACATTCAGC
58 TT-TCTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGC
* * * * *
155783 TTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTGCTGT
122 TTTAATCTGTTCCACTGCAATGCCAAGGAAATA-AGATTCGCTG-CTTAAGCTTTAATCTACTGC
** * * *
155847 GACGCTAGGGAAATAAGATTTACTACCTTCAACTTTAATCTGTTCCACTACAACG-CAA
185 GACGC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * *
155905 TCGAAATAAGATTC-ACTGCCTTCAGTTTTAATCTACTACGACGCCAGGGAAATAAGATTCACTG
1 -GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATT-TCTG
** * * * *
155969 -CTTCAGCTTTAATCTGTTCCACTGC-AACGAAAAGGAAATAAGATTCGCGGCCTTCAGGTTTAA
64 CCTTCAGCTTTAAT-TGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAA
* * * * *
156032 TC---T--ACAGCGACGCCAGGGAAATAAAATTCGCTGGCTTCAA-CTTTAATCTGTTCCACTGC
127 TCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCT-GCTT-AAGCTTTAATC---T--ACTGC
* * * * *
156091 AACGCTGAGGG-AATAAGACTCG-TGTCCTTCTA-ATTTAATC---T--ACTGCCACGCCAG
185 GACGC--AGGGAAATAAGATTCGCTG-CCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAA
* * * ** *
156145 GGAAATAAGATTCG-CCGCCTTCAGCTTTAATCTACTGCGACGCCAATGCCAAAGAAATGAGATT
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTA-T--TA---CAACGCCAGGGAAATAAGATT
* * * * * * *
156209 CGCTGCCTTCAACTTTAA-T-TT--ACTAC-AACGGCAGGGAAATAAGATTTGCTGCCTTTAGCT
60 -TCTGCCTTCAGCTTTAATTGTTCCACTGCGAA-GCCAAGGAGATAAGATTCGCTGCCTTTAGCT
* * * *
156269 TTAATC---T--ACTGCGACT-CCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTGTTCCA
123 TTAATCTGTTCCACTGC-AATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATC---T--A
* ** * * * * *
156328 CTGCAACGCCAAAGAAATAAGATTCGCTTCCTTCTGCTTTAATC---T--ACTTCGAC-CCCA
181 CTGCGACG-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
156385 GGAAATAAGATTCG-TTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGA--T
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATT--A---CAACGCCAGGGAAATAAGATTT
* * * * * * * *
156447 -T-CATTCAGCTTTAA----TCTACTGTG-ACCCCAGCGAAATAAGATTCGCTACCTTCAGCTTT
61 CTGCCTTCAGCTTTAATTGTTCCACTGCGAAGCCAAG-GAGATAAGATTCGCTGCCTTTAGCTTT
* * * * * *
156505 AATCTATTCCACTGCAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAATCTACTACGACG
125 AATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTG-CTTAAGCTTTAATCTACTGCGACG
** * * * * *
156570 CTAGGGAAATAAGATTTACTACCTTCAACTTGAATCTGTTCCACTGCAACGCGAG
189 C-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * *
156625 GGAAATGAGATTCG-CTACCTTTAGCTTTAATCTACTGCGACGCTAGGAAAATAAGATTTGATGC
1 GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTT-CTGC
156689 CTTCAG
65 CTTCAG
156695 TTTTCATCTA
Statistics
Matches: 7093, Mismatches: 1587, Indels: 1227
0.72 0.16 0.12
Matches are distributed among these distances:
220 14 0.00
221 55 0.01
223 2 0.00
225 9 0.00
226 74 0.01
227 13 0.00
229 3 0.00
230 325 0.05
231 9 0.00
232 70 0.01
233 43 0.01
234 82 0.01
235 151 0.02
236 12 0.00
237 121 0.02
238 324 0.05
239 322 0.05
240 1057 0.15
241 146 0.02
242 29 0.00
243 142 0.02
244 365 0.05
245 2715 0.38
246 88 0.01
247 113 0.02
248 16 0.00
249 48 0.01
250 315 0.04
251 7 0.00
252 69 0.01
254 5 0.00
255 159 0.02
259 2 0.00
260 29 0.00
261 1 0.00
264 1 0.00
265 75 0.01
266 1 0.00
268 1 0.00
269 1 0.00
270 79 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (242 bp):
GGAAATAAGATTCGACTGCCTTCAGCTTTAATCTATTACAACGCCAGGGAAATAAGATTTCTGCC
TTCAGCTTTAATTGTTCCACTGCGAAGCCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTG
TTCCACTGCAATGCCAAGGAAATAAGATTCGCTGCTTAAGCTTTAATCTACTGCGACGCAGGGAA
ATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
Found at i:153648 original size:51 final size:51
Alignment explanation
Indices: 153429--153770 Score: 294
Period size: 51 Copynumber: 6.9 Consensus size: 51
153419 GCTTTAACCT
* * * * *
153429 ACTGCGACGCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCC
1 ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
* * *
153480 ACTGCAACGCTTA-GGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT--
1 ACTGCAACGC-CAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
** * * *
153529 A---CAACGTTAGGGAAATGAGATTTGCTGCCTTCAGCTTTAATTTGTTCC
1 ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
** * * *
153577 ACTGTGATGCCAAAGG-AATAAGATTCGCTGCTTTCAGCTTTAATCTGTTCC
1 ACTGCAACGCC-AGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
* * * * * *
153628 ACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTT-A---G-TCT
1 ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
* * * * * * *
153674 ACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTCT
1 ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
*
153725 ACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
1 ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
153771 AAGATTTACT
Statistics
Matches: 229, Mismatches: 48, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
45 2 0.01
46 71 0.31
47 1 0.00
48 1 0.00
49 1 0.00
50 4 0.02
51 144 0.63
52 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (51 bp):
ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCC
Found at i:153848 original size:51 final size:51
Alignment explanation
Indices: 153785--154573 Score: 367
Period size: 46 Copynumber: 16.3 Consensus size: 51
153775 TTTACTTACA
*
153785 TTCAGC-TTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATA-AGATTTGCTGCC
** * * *
153835 TTCAGCTTTAATCTG-----CTGTGACGCTAGGGAAATAAGATTTACTACC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * ** **
153881 TTCAGCTTTAATTTGTTCCACTACAACGCAATCGAAATAAGATTCACTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * * **
153932 TTCAGTTTTAATC---T--ACTACGACGCCAGGGAAATAAAATTCACTG-C
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* *
153977 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATGAGATTTGTTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * * *
154028 TTCAGCTTTAATC---T--ACTACGATGCTAGAGAAATAAGATTTGCTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * *
154074 TTCTGC-----T-T-TTCCACTAG-TACGCCAAGGAAATGAGATTTGCTGCC
1 TTCAGCTTTAATCTGTTCCACT-GCAACGCCAGGGAAATAAGATTTGCTGCC
* ** * * *
154118 TTCAGTTTTAATCTAAT--AC-G--ACGCCAAGGAAATAAGATTTGCTTCT
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * * * * * *
154164 TTTAGCTTTAATTTGTTCCACTGTAATGCCAAGGAAATGTA-ATTCGCTGTC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAAT-AAGATTTGCTGCC
* * * * * * *
154215 GTCAGCTTTAATCTGTTCTACTGCAATGCTAAGGAAATAAGATTCGCTGGC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * * * *
154266 TTTAGCTTT-A---G-TCTATTGCGACGTCAGGGAAATAAGATTTGGTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * * * * *
154312 TTCCGCTTGAATCTGTTCTACTACAACTCCAAGGAAATAAAATTTGCTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * ** * **
154363 TTCAACTTTAA-----TCAACTGTGACGACAGGGAAATAAGATTCCCTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* ** * * *
154409 TTCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGCTACT
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * * *
154460 TTCAGCTTTAATC---T--AATGCGACGCCAAGGAAATAAGATTTGCTACC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
** * * * * * * ** *
154506 TTCAATTTTAATTTGATCCACTACAATGCCAAGAAAATGGGATTCGCTGCC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
* * *
154557 GTCAACTATAATCTGTT
1 TTCAGCTTTAATCTGTT
154574 ACCTTCAGCT
Statistics
Matches: 551, Mismatches: 141, Indels: 93
0.70 0.18 0.12
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
44 28 0.05
45 13 0.02
46 230 0.42
47 4 0.01
48 6 0.01
49 5 0.01
50 33 0.06
51 229 0.42
52 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (51 bp):
TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCC
Found at i:153920 original size:175 final size:176
Alignment explanation
Indices: 153609--153946 Score: 423
Period size: 175 Copynumber: 1.9 Consensus size: 176
153599 ATTCGCTGCT
* * * * *
153609 TTCAGCTTTAATCTGTTCCACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCT
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGAGTCGCTGCCTTCAGCTTTAATCT
** * * * * * *
153674 ACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACGGCAGG
66 ACTGCGACGTCAGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAACGGCAGC
*
153739 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTAAGATTTACTTACA
131 GAAATAAGATTCACTGCCTTCAGCTTTAATCTAAGATTTACTTACA
* * *
153785 TTCAGC-TTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATC
1 TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATA-AGAGTCGCTGCCTTCAGCTTTAATC
* * *
153848 TGCTGTGACG-CTAGGGAAATAAGATTTACTACCTTCAGCTTTAATTTGTTCCACTACAAC-GCA
65 TACTGCGACGTC-AGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAACGGC-
* *
153911 ATCGAAATAAGATTCACTGCCTTCAGTTTTAATCTA
128 AGCGAAATAAGATTCACTGCCTTCAGCTTTAATCTA
153947 CTACGACGCC
Statistics
Matches: 137, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
174 4 0.03
175 127 0.93
176 6 0.04
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (176 bp):
TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGAGTCGCTGCCTTCAGCTTTAATCT
ACTGCGACGTCAGGGAAATAAGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAACGGCAGC
GAAATAAGATTCACTGCCTTCAGCTTTAATCTAAGATTTACTTACA
Found at i:154172 original size:90 final size:90
Alignment explanation
Indices: 153799--154172 Score: 279
Period size: 90 Copynumber: 4.0 Consensus size: 90
153789 GCTTAATCTG
* * * * * ** * *
153799 TTCCACTGCAATGCCAGGGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTAGGG
1 TTCCACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGTTTTAATCTACTACGACGCCAAGG
* * **
153864 AAATAAGATTTACTACCTTCAGCTTTAATTT
66 AAATAAGA-TT--T-GCTTC--TTTTAGCTT
* * * ** *
153895 GTTCCACTACAACG-CAATCGAAATAAGATTCACTGCCTTCAGTTTTAATCTACTACGACGCCAG
1 -TTCCACTGCAACGCCAA-GGAAATGAGATTTGCTGCCTTCAGTTTTAATCTACTACGACGCCAA
* * * *
153959 GGAAATAAAATTCACTGCTTCAGCTTTAATCTG
64 GGAAATAAGATT---TGCTT---CTTTTAGCTT
* * * * *
153992 TTCCACTGCAACGCCAGGGAAATGAGATTTGTTGCCTTCAGCTTTAATCTACTACGATG-CTAGA
1 TTCCACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGTTTTAATCTACTACGACGCCAAG-
* *
154056 GAAATAAGATTTGCTGCCTTCT-GCTT
65 GAAATAAGATTTGCT-TCTTTTAGCTT
* *
154082 TTCCACTAG-TACGCCAAGGAAATGAGATTTGCTGCCTTCAGTTTTAATCTAATACGACGCCAAG
1 TTCCACT-GCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGTTTTAATCTACTACGACGCCAAG
154146 GAAATAAGATTTGCTTCTTTTAGCTT
65 GAAATAAGATTTGCTTCTTTTAGCTT
154172 T
1 T
154173 AATTTGTTCC
Statistics
Matches: 220, Mismatches: 46, Indels: 29
0.75 0.16 0.10
Matches are distributed among these distances:
89 4 0.02
90 73 0.33
91 7 0.03
93 4 0.02
95 2 0.01
96 64 0.29
97 65 0.30
99 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (90 bp):
TTCCACTGCAACGCCAAGGAAATGAGATTTGCTGCCTTCAGTTTTAATCTACTACGACGCCAAGG
AAATAAGATTTGCTTCTTTTAGCTT
Found at i:154226 original size:97 final size:97
Alignment explanation
Indices: 153770--154228 Score: 413
Period size: 97 Copynumber: 4.8 Consensus size: 97
153760 AGCTTTAATC
* * * * *
153770 TAAGATTTACTTACATTCAGC-TTAATCTGTTCCACTGCAATGCCAGGGAAAAGAGATTTGCTGC
1 TAAGATTTAC-TACTTTCAGCTTTAATTTGTTCCACTGCAACGCCAAGGAAATGAGATTTGCTGC
* ** * *
153834 CTTCAGCTTTAATCTGCTGTGACGCTAGGGAAA
65 CTTCAGCTTTAATCTACTACGACGCCAAGGAAA
* * * * **
153867 TAAGATTTACTACCTTCAGCTTTAATTTGTTCCACTACAACG-CAATCGAAATAAGATTCACTGC
1 TAAGATTTACTACTTTCAGCTTTAATTTGTTCCACTGCAACGCCAA-GGAAATGAGATTTGCTGC
* *
153931 CTTCAGTTTTAATCTACTACGACGCCAGGGAAA
65 CTTCAGCTTTAATCTACTACGACGCCAAGGAAA
* * * * * *
153964 TAAAATTCACTGC-TTCAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATGAGATTTGTTGCC
1 TAAGATTTACTACTTTCAGCTTTAATTTGTTCCACTGCAACGCCAAGGAAATGAGATTTGCTGCC
* *
154028 TTCAGCTTTAATCTACTACGATG-CTAGAGAAA
66 TTCAGCTTTAATCTACTACGACGCCAAG-GAAA
* * * * *
154060 TAAGATTTGCTGCCTTCTGC------TT-TTCCACTAG-TACGCCAAGGAAATGAGATTTGCTGC
1 TAAGATTTACTACTTTCAGCTTTAATTTGTTCCACT-GCAACGCCAAGGAAATGAGATTTGCTGC
* *
154117 CTTCAGTTTTAATCTAATACGACGCCAAGGAAA
65 CTTCAGCTTTAATCTACTACGACGCCAAGGAAA
* * * * * * *
154150 TAAGATTTGCTTCTTTTAGCTTTAATTTGTTCCACTGTAATGCCAAGGAAATGTA-ATTCGCTGT
1 TAAGATTTACTACTTTCAGCTTTAATTTGTTCCACTGCAACGCCAAGGAAATG-AGATTTGCTGC
*
154214 CGTCAGCTTTAATCT
65 CTTCAGCTTTAATCT
154229 GTTCTACTGC
Statistics
Matches: 294, Mismatches: 52, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
90 71 0.24
91 5 0.02
95 2 0.01
96 89 0.30
97 126 0.43
98 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (97 bp):
TAAGATTTACTACTTTCAGCTTTAATTTGTTCCACTGCAACGCCAAGGAAATGAGATTTGCTGCC
TTCAGCTTTAATCTACTACGACGCCAAGGAAA
Found at i:154516 original size:97 final size:97
Alignment explanation
Indices: 154216--154527 Score: 322
Period size: 97 Copynumber: 3.2 Consensus size: 97
154206 TTCGCTGTCG
* ** * * *
154216 TCAGCTTTAATCTGTTCTACTGCAATGCTAAGGAAATAAGATTCGCTGGCTTT-AGCTTTAGTCT
1 TCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATTTGCT-GCTTTCAGCTTTAATCT
* * *
154280 ATTGCGACGTCAGGGAAATAAGATTTGGTGCCT
65 AATGCGACGACAGGGAAATAAGATTTGCTGCCT
* * * * * * * *
154313 TCCGCTTGAATCTGTTCTACTACAACTCCAAGGAAATAAAATTTGCTGCCTTCAACTTTAATC-A
1 TCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATTTGCTGCTTTCAGCTTTAATCTA
* **
154377 ACTGTGACGACAGGGAAATAAGATTCCCTGCCT
66 A-TGCGACGACAGGGAAATAAGATTTGCTGCCT
* * *
154410 TCAGCTTTAATCTGTTCCACTGCAACACCAAAGAAATGAGATTTGCTACTTTCAGCTTTAATCTA
1 TCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATTTGCTGCTTTCAGCTTTAATCTA
* * *
154475 ATGCGACGCCAAGGAAATAAGATTTGCTACCT
66 ATGCGACGACAGGGAAATAAGATTTGCTGCCT
** * *
154507 TCAATTTTAATTTGATCCACT
1 TCAGCTTTAATCTGTTCCACT
154528 ACAATGCCAA
Statistics
Matches: 174, Mismatches: 38, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
96 5 0.03
97 167 0.96
98 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (97 bp):
TCAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATTTGCTGCTTTCAGCTTTAATCTA
ATGCGACGACAGGGAAATAAGATTTGCTGCCT
Found at i:154686 original size:117 final size:117
Alignment explanation
Indices: 154460--154690 Score: 264
Period size: 117 Copynumber: 2.0 Consensus size: 117
154450 ATTTGCTACT
* * * * *
154460 TTCAGCTTTAATCTAATGCGACGCCAAGGAAATAAGATTTGCTACCTTCAATTTTAATTTGATCC
1 TTCAGCTTGAATCTAATGCGACGACAAGGAAATAAGATTCGCTACCTTCAACTTTAATCTGATCC
** *
154525 ACTACAATGCCAAGAAAATGGGATTCGCTGCCGTCAACTATAATCTGTTACC
66 ACTACAATGCCAAGAAAATAAGATTCACTGCCGTCAACTATAATCTGTTACC
* * * * * * *
154577 TTCAGCTTGAATCTACTGCGATGACACGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCT
1 TTCAGCTTGAATCTAATGCGACGACAAGGAAATAAGATTCGCTACCTTCAACTTTAATCTGATCC
* * * * * * *
154642 ACTACAATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATCTGTT
66 ACTACAATGCCAAGAAAATAAGATTCACTGCCGTCAACTATAATCTGTT
154691 CTACTACAAT
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
117 92 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (117 bp):
TTCAGCTTGAATCTAATGCGACGACAAGGAAATAAGATTCGCTACCTTCAACTTTAATCTGATCC
ACTACAATGCCAAGAAAATAAGATTCACTGCCGTCAACTATAATCTGTTACC
Found at i:155040 original size:51 final size:51
Alignment explanation
Indices: 154619--155015 Score: 769
Period size: 51 Copynumber: 7.8 Consensus size: 51
154609 TAAGATTCGC
154619 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
154670 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
154721 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
154772 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
154823 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
154874 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
154925 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
1 TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
*
154976 TGCCTTCAGCTTTAATCTGTTCTACTGA-AACGCCAAGGAA
1 TGCCTTCAGCTTTAATCTGTTCTACT-ACAATGCCAAGGAA
155016 GTAAGATTCA
Statistics
Matches: 344, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
51 343 1.00
52 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (51 bp):
TGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAAGGAAATAATATTTAT
Found at i:155103 original size:97 final size:97
Alignment explanation
Indices: 154976--155187 Score: 406
Period size: 97 Copynumber: 2.2 Consensus size: 97
154966 TAATATTTAT
154976 TGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAGTAAGATTCATCGCCTTTACCTTTA
1 TGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAGTAAGATTCATCGCCTTTACCTTTA
155041 GTCTATTGCGGTGCCAGGGAAATAAGATTCGC
66 GTCTATTGCGGTGCCAGGGAAATAAGATTCGC
155073 TGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAGTAAGATTCATCGCCTTTACCTTTA
1 TGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAGTAAGATTCATCGCCTTTACCTTTA
155138 GTCTATTGCGGTGCCAGGGAAATAAGATTCGC
66 GTCTATTGCGGTGCCAGGGAAATAAGATTCGC
* *
155170 TACCTTCAACTTTAATCT
1 TGCCTTCAGCTTTAATCT
155188 ACTACGACTC
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 113 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (97 bp):
TGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAAGGAAGTAAGATTCATCGCCTTTACCTTTA
GTCTATTGCGGTGCCAGGGAAATAAGATTCGC
Found at i:155259 original size:92 final size:91
Alignment explanation
Indices: 155155--156750 Score: 1224
Period size: 92 Copynumber: 16.9 Consensus size: 91
155145 GCGGTGCCAG
* *
155155 GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTACC
1 GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTACC
*
155220 TTCAACTTTAATCTACTACGACTCCA
66 TTCAGCTTTAATCTACTACGACTCCA
* *
155246 GGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTAC
1 GG-AAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTAC
*
155311 CTTCAACTTTAATCTACTACGACTCCA
65 CTTCAGCTTTAATCTACTACGACTCCA
* *
155338 GGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTAC
1 GG-AAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTAC
*
155403 CTTCAACTTTAATCTACTACGACTCCA
65 CTTCAGCTTTAATCTACTACGACTCCA
* *
155430 GGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTAC
1 GG-AAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTAC
*
155495 CTTCAACTTTAATCTACTACGACTCCA
65 CTTCAGCTTTAATCTACTACGACTCCA
* *
155522 GGTAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTAC
1 GG-AAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTAC
*
155587 CTTCAACTTTAATCTACTACGA-TGCCA
65 CTTCAGCTTTAATCTACTACGACT-CCA
* * * *
155614 GGGAAATAAGATTCGCTGCCTTCAAGTTTAATCTACTACGACTCCAGGTAAATAAGATTCGCTAC
1 -GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTAC
* * *
155679 CATT-AGCTTTAATCTGTTCCACTACAACGCTGA
65 C-TTCAGCTTTAATC---T--ACTACGACTC-CA
* ** * ** *
155712 GGAAATAAGATTCACCGCCTTCAACTTTAATCTACTACGATGCCAGGGAAATAAGATTTACTACA
1 GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTACC
* * *
155777 TTCAGCTTTAATCTGTTCCACTGCAATGCCA
66 TTCAGCTTTAATC--TACTAC-G-ACT-CCA
* * * * ** * **
155808 GGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTAGGGAAATAAGATTTACTA
1 -GGAAATA-AGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTA
* * * *
155872 CCTTCAACTTTAATCTGTTCCACTACAACGCAA
64 CCTTCAGCTTTAATC---T--ACTACGACTCCA
* * * ** * *
155905 TCGAAATAAGATTCACTGCCTTCAGTTTTAATCTACTACGACGCCAGGGAAATAAGATTCACT-G
1 -GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTAC
* * *
155969 CTTCAGCTTTAATCT-GTTCCACTGCAACGAAAA
65 CTTCAGCTTTAATCTACTACGACT-C--C----A
** ** * **
156002 GGAAATAAGATTCGCGGCCTTCAGGTTTAATCTAC-AGCGACGCCAGGGAAATAAAATTCGCTGG
1 GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTA-CGACGCCAGGGAAATAAGATTCGCTAC
* * * * *
156066 CTTCAACTTTAATCTGTTCCACTGCAACGCTGA
65 CTTCAGCTTTAATC---T--ACTACGACTC-CA
* * * * * **
156099 GGGAATAAGACTCG-TGTCCTTCTAA-TTTAATCTACTGCCACGCCAGGGAAATAAGATTCGCCG
1 GGAAATAAGATTCGCT-ACCTTC-AACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTA
*
156162 CCTTCAGCTTTAATCTACTGCGACGCCAATGCCAA
64 CCTTCAGCTTTAATCTACT---ACG--ACT-CC-A
* * * * * * * *
156197 AGAAATGAGATTCGCTGCCTTCAACTTTAATTTACTACAACGGCAGGGAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTACC
* *
156262 TTTAGCTTTAATCTACTGCGACTCCA
66 TTCAGCTTTAATCTACTACGACTCCA
* * * **
156288 GGGAAATAAGATTCGCTGCCTTCAGA-TTTAATCTGTTCCACTGCAACGCCAAAGAAATAAGATT
1 -GGAAATAAGATTCGCTACCTTCA-ACTTTAATC---T--ACTACGACGCCAGGGAAATAAGATT
* * * *
156352 CGCTTCCTTCTGCTTTAATCTACTTCGACCCCA
59 CGCTACCTTCAGCTTTAATCTACTACGACTCCA
* * * * *
156385 GGAAATAAGATTCGTTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATT--
1 GGAAATAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACGCCAGGGAAATAAGATTCG
** *
156448 C-A--TTCAGCTTTAATCTACTGTGACCCCA
61 CTACCTTCAGCTTTAATCTACTACGACTCCA
* * * *
156476 GCGAAATAAGATTCGCTACCTTCAGCTTTAATCTATTCCACTGCAACGCCAAGGAAATGAGATTC
1 G-GAAATAAGATTCGCTACCTTCAACTTTAATCTA--CTAC-G--ACGCCAGGGAAATAAGATTC
* * * *
156541 ACTGCCTTCAGCTTTAATCTACTACGACGCTA
60 GCTACCTTCAGCTTTAATCTACTACGACTCCA
** * * * * *
156573 GGGAAATAAGATTTACTACCTTCAACTTGAATCTGTTCCACTGCAACGCGAGGGAAATGAGATTC
1 -GGAAATAAGATTCGCTACCTTCAACTTTAATC---T--ACTACGACGCCAGGGAAATAAGATTC
* * * *
156638 GCTACCTTTAGCTTTAATCTACTGCGACGCTA
60 GCTACCTTCAGCTTTAATCTACTACGACTCCA
* * * ** * * * * * *
156670 GGAAAATAAGATTTGATGCCTTCAGTTTTCATCTACTCCGATC-CCAAGGAAATAAGATTTGTTG
1 GG-AAATAAGATTCGCTACCTTCAACTTTAATCTACTACGA-CGCCAGGGAAATAAGATTCGCTA
156734 CCTTCAGCTTTAATCTA
64 CCTTCAGCTTTAATCTA
156751 TTCCACTACA
Statistics
Matches: 1268, Mismatches: 162, Indels: 149
0.80 0.10 0.09
Matches are distributed among these distances:
87 1 0.00
89 3 0.00
90 4 0.00
91 29 0.02
92 549 0.43
93 9 0.01
94 7 0.01
95 7 0.01
96 132 0.10
97 440 0.35
98 73 0.06
99 1 0.00
100 7 0.01
102 2 0.00
103 4 0.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (91 bp):
GGAAATAAGATTCGCTACCTTCAACTTTAATCTACTACGACGCCAGGGAAATAAGATTCGCTACC
TTCAGCTTTAATCTACTACGACTCCA
Found at i:156352 original size:51 final size:48
Alignment explanation
Indices: 154604--156749 Score: 987
Period size: 46 Copynumber: 44.7 Consensus size: 48
154594 GCGATGACAC
* *
154604 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** * *
154655 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** * *
154706 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** * *
154757 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** * *
154808 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** * *
154859 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** * *
154910 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* *** *
154961 GGAAATAATATTTATTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* * * * * * *** *
155012 GGAAGTAAGATTC-ATCGCCTTTACCTTTAGTC--TATTGCGGTGCCAG
1 GGAAATAAGATTCGCT-GCCTTCAGCTTTAATCTTTACTGCAACGCCAA
*
155058 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTGAAACGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-TACTGCAACGCCAA
* * * * * * *** *
155109 GGAAGTAAGATTC-ATCGCCTTTACCTTTAGTC--TATTGCGGTGCCAG
1 GGAAATAAGATTCGCT-GCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155155 GGAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155200 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155246 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155292 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155338 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155384 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155430 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155476 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
155522 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGACTCC-A
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * * *
155568 GGTAAATAAGATTCGCTACCTTCAACTTTAATC--TACTACGATGCCAG
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * *
155615 GGAAATAAGATTCGCTGCCTTCAAG-TTTAATC--TACTACGACTCC-A
1 GGAAATAAGATTCGCTGCCTTC-AGCTTTAATCTTTACTGCAACGCCAA
* * **
155660 GGTAAATAAGATTCGCTACCATT-AGCTTTAATCTGTTCCACTACAACGCTGA
1 GG-AAATAAGATTCGCTGCC-TTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * * * *
155712 GGAAATAAGATTCACCGCCTTCAACTTTAATC--TACTACGATGCCAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
** * * * *
155758 GGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * ** * *
155809 GGAAA-AGAGATTTGCTGCCTTCAGCTTTAATC--TGCTGTGACGCTAG
1 GGAAATA-AGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
** * * *
155855 GGAAATAAGATTTACTACCTTCAACTTTAATCTGTTCCACTACAACG-CAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * * *
155905 TCGAAATAAGATTCACTGCCTTCAGTTTTAATC--TACTACGACGCCAG
1 -GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* **
155952 GGAAATAAGATTCACTG-CTTCAGCTTTAATCTGTTCCACTGCAACGAAAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * *
156002 GGAAATAAGATTCGCGGCCTTCAGGTTTAATC--TACAGCGACGCCAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * **
156048 GGAAATAAAATTCGCTGGCTTCAACTTTAATCTGTTCCACTGCAACGCTGA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * *
156099 GGGAATAAGACTCG-TGTCCTTCTA-ATTTAATC--TACTGCCACGCCAG
1 GGAAATAAGATTCGCTG-CCTTC-AGCTTTAATCTTTACTGCAACGCCAA
* *
156145 GGAAATAAGATTCGCCGCCTTCAGCTTTAATC--TACTGCGACGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
156191 TGCCAAAGAAATGAGATTCGCTGCCTTCAACTTTAA--TTTACTACAACGGCAG
1 -G-----GAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * *
156243 GGAAATAAGATTTGCTGCCTTTAGCTTTAATC--TACTGCGACTCCAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
*
156289 GGAAATAAGATTCGCTGCCTTCAGATTTAATCTGTTCCACTGCAACGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * * *
156340 AGAAATAAGATTCGCTTCCTTCTGCTTTAATC--TACTTCGAC-CCCA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * *
156385 GGAAATAAGATTCGTTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * ** *
156436 GGAAATGAGA-T---T-CATTCAGCTTTAATC--TACTGTGAC-CCCA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
*
156476 GCGAAATAAGATTCGCTACCTTCAGCTTTAATCTATTCCACTGCAACGCCAA
1 G-GAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * * *
156528 GGAAATGAGATTCACTGCCTTCAGCTTTAATC--TACTACGACGCTAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
** * * * * *
156574 GGAAATAAGATTTACTACCTTCAACTTGAATCTGTTCCACTGCAACGCGAG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT-TT--ACTGCAACGCCAA
* * * * *
156625 GGAAATGAGATTCGCTACCTTTAGCTTTAATC--TACTGCGACG-CTA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
* * * * * *
156670 GGAAAATAAGATTTGATGCCTTCAGTTTTCATC--TACTCCGATC-CCAA
1 GG-AAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGC-AACGCCAA
* *
156717 GGAAATAAGATTTGTTGCCTTCAGCTTTAATCT
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
156750 ATTCCACTAC
Statistics
Matches: 1770, Mismatches: 232, Indels: 190
0.81 0.11 0.09
Matches are distributed among these distances:
40 4 0.00
41 14 0.01
42 1 0.00
43 1 0.00
45 53 0.03
46 909 0.51
47 18 0.01
48 10 0.01
49 7 0.00
50 38 0.02
51 671 0.38
52 44 0.02
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (48 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTTACTGCAACGCCAA
Found at i:156467 original size:188 final size:192
Alignment explanation
Indices: 156265--156750 Score: 585
Period size: 188 Copynumber: 2.6 Consensus size: 192
156255 TGCTGCCTTT
* *
156265 AGCTTTAATCTACTGCGACTCCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTGTTCCACT
1 AGCTTTAATCTACTGCGACCCCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTATTCCACT
* * * *
156330 GCAACGCCAAAGAAATAAGATTCGCTTCCTTCTGCTTTAATCTACTTCGACCCCA-GGAAATAAG
66 GCAACGCCAAAGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTACGACCCCAGGGAAATAAG
** *
156394 ATTCGTTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATT-C-A-TTC
131 ATTCACTACCTTCAACTTGAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCCTACTTC
* * * *
156453 AGCTTTAATCTACTGTGACCCCAGCGAAATAAGATTCGCTACCTTCAGCTTTAATCTATTCCACT
1 AGCTTTAATCTACTGCGACCCCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTATTCCACT
* * * *
156518 GCAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAATCTACTACGACGCTAGGGAAATAAG
66 GCAACGCCAAAGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTACGACCCCAGGGAAATAAG
* * * *
156583 ATTTACTACCTTCAACTTGAATCTGTTCCACTGCAACGCGAGGGAAATGAGATTCGCTACCTTT
131 ATTCACTACCTTCAACTTGAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTC-CTA-CTTC
* * * * * * * *
156647 AGCTTTAATCTACTGCGACGCTAGGAAAATAAGATTTGATGCCTTCAGTTTTCATCTACT-C-C-
1 AGCTTTAATCTACTGCGACCCCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTATTCCACT
* * ***
156709 G-ATC-CCAAGGAAATAAGATTTGTTGCCTTCAGCTTTAATCTA
66 GCAACGCCAAAGAAATAAGATTCACTGCCTTCAGCTTTAATCTA
156751 TTCCACTACA
Statistics
Matches: 255, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
188 106 0.42
189 91 0.36
190 2 0.01
191 2 0.01
192 2 0.01
193 1 0.00
194 51 0.20
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (192 bp):
AGCTTTAATCTACTGCGACCCCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTATTCCACT
GCAACGCCAAAGAAATAAGATTCACTGCCTTCAGCTTTAATCTACTACGACCCCAGGGAAATAAG
ATTCACTACCTTCAACTTGAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCCTACTTC
Found at i:157051 original size:46 final size:46
Alignment explanation
Indices: 157001--157391 Score: 263
Period size: 46 Copynumber: 8.2 Consensus size: 46
156991 TTCCTTCTGA
* ** *
157001 TTTAATCTACTGTGACGTTAGGGAAATAAGATTCGCTGCCTTCAGC
1 TTTAATCTACTGCGACGCCAGAGAAATAAGATTCGCTGCCTTCAGC
* *
157047 TTTAATCTACTGCGACGCCAGAGAAATCAGATTCGCTGCCTTTAGC
1 TTTAATCTACTGCGACGCCAGAGAAATAAGATTCGCTGCCTTCAGC
* * * * *
157093 GTTAATCCATTCCACTACAACGCCA-AGGAAATGAGATTCGCTGCCTTCAAC
1 TTTAAT-C--T--ACTGCGACGCCAGA-GAAATAAGATTCGCTGCCTTCAGC
* * *
157144 TTTAATCTACTGCGACGCCA-AGTAAATAAGATTTGCTGCCCTCAAC
1 TTTAATCTACTGCGACGCCAGAG-AAATAAGATTCGCTGCCTTCAGC
* * * * *
157190 ATTAATCTGTTTCACTACAACACCA-AGAAA-AGGAGATTCGTTGCCTTCAGC
1 TTTAATC----T-ACTGCGACGCCAGAGAAATA--AGATTCGCTGCCTTCAGC
* *
157241 TTTAATCTACTGCGTCGCCAG-GAAAATAAGATTTGCTGCCTTCAGC
1 TTTAATCTACTGCGACGCCAGAG-AAATAAGATTCGCTGCCTTCAGC
* * * * * *
157287 TTTAATCTATTCCACTAACAACACCA-AGGAACAAGATTCGCTGCCTTTAGC
1 TTTAATC---T--ACT-GCGACGCCAGAGAAATAAGATTCGCTGCCTTCAGC
* * * * *
157338 TGTAATCTACTGCGACACCAGGGAAATAAGATTTGCTGCCTTTAGC
1 TTTAATCTACTGCGACGCCAGAGAAATAAGATTCGCTGCCTTCAGC
157384 TTTAATCT
1 TTTAATCT
157392 GTTCCACTAC
Statistics
Matches: 271, Mismatches: 49, Indels: 50
0.73 0.13 0.14
Matches are distributed among these distances:
45 8 0.03
46 145 0.54
47 5 0.02
48 3 0.01
49 3 0.01
50 6 0.02
51 95 0.35
52 6 0.02
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (46 bp):
TTTAATCTACTGCGACGCCAGAGAAATAAGATTCGCTGCCTTCAGC
Found at i:157195 original size:97 final size:96
Alignment explanation
Indices: 157022--157421 Score: 487
Period size: 97 Copynumber: 4.1 Consensus size: 96
157012 GTGACGTTAG
* *
157022 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGAGAAATCAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCA-AGAAATAAGATTTGCTGCC
* * * *
157087 TTTAGCGTTAATCCATTCCACTACAACGCCAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
* *
157119 GGAAATGAGATTCGCTGCCTTCAACTTTAATCTACTGCGACGCCAAGTAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-AAATAAGATTTGCTGCC
* * * * *
157184 CTCAACATTAATCTGTTTCACTACAACACCAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
* ** * * *
157216 GAAAAGGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGTCGCCAGGAAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-AAATAAGATTTGCTGCC
157281 TTCAGCTTTAATCTATTCCACTAACAACACCAA
65 TTCAGCTTTAATCTATTCCACT-ACAACACCAA
* * * * *
157314 GG-AACAAGATTCGCTGCCTTTAGCTGTAATCTACTGCGACACCAGGGAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCA-AGAAATAAGATTTGCTGCC
* * * *
157378 TTTAGCTTTAATCTGTTCCACTACAACGCAAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
*
157410 AGAAATAAGATT
1 GGAAATAAGATT
157422 ATCGGCTTTA
Statistics
Matches: 261, Mismatches: 38, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
96 11 0.04
97 237 0.91
98 13 0.05
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (96 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGAAATAAGATTTGCTGCCT
TCAGCTTTAATCTATTCCACTACAACACCAA
Found at i:157691 original size:46 final size:46
Alignment explanation
Indices: 157627--157862 Score: 208
Period size: 46 Copynumber: 5.0 Consensus size: 46
157617 AAACCATCCC
* * *
157627 ACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
1 ACTGCGACGCTAGAGAAATAAGATTTGCTGCCTTCAGCTTTAATCT
* * * *
157673 ACTGTGACGCTAGAGAAATAAGATTTGTTGGCTCCAGCTTTAATCTGTT
1 ACTGCGACGCTAGAGAAATAAGATTTGCTGCCTTCAGCTTTAATC---T
** * * * *
157722 CCACTGTAACGCCA-AGGAAATGAGATTCGCTGCCTTTAGCTTTAATCT
1 --ACTGCGACGCTAGA-GAAATAAGATTTGCTGCCTTCAGCTTTAATCT
* *
157770 ACTGCGACGCTAG-GAAAATAAGATTTGATGCCTTCAGCTTTCATCT
1 ACTGCGACGCTAGAG-AAATAAGATTTGCTGCCTTCAGCTTTAATCT
* * * *
157816 ACTCCGATGCCA-AGGAAATAAGATTTGTTGCCTTCAGCTTTAATCT
1 ACTGCGACGCTAGA-GAAATAAGATTTGCTGCCTTCAGCTTTAATCT
157862 A
1 A
157863 TTCCACTACA
Statistics
Matches: 152, Mismatches: 28, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 112 0.74
47 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 35 0.23
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (46 bp):
ACTGCGACGCTAGAGAAATAAGATTTGCTGCCTTCAGCTTTAATCT
Found at i:157748 original size:97 final size:92
Alignment explanation
Indices: 157640--157862 Score: 277
Period size: 97 Copynumber: 2.4 Consensus size: 92
157630 GCGATGCTAG
* * *
157640 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACGCTA-GAGAAATAAGATTTGTTGG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGA-AAATAAGATTTGATGC
**
157704 CTCCAGCTTTAATCTGTTCCACTGTAACGCCAA
65 CTCCAGCTTTAATCTACT-C-C-G--ACGCCAA
* *
157737 GGAAATGAGATTCGCTGCCTTTAGCTTTAATCTACTGCGACGCTAGGAAAATAAGATTTGATGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGAAAATAAGATTTGATGCC
* * *
157802 TTCAGCTTTCATCTACTCCGATGCCAA
66 TCCAGCTTTAATCTACTCCGACGCCAA
* *
157829 GGAAATAAGATTTGTTGCCTTCAGCTTTAATCTA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTA
157863 TTCCACTACA
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
92 36 0.32
94 1 0.01
95 1 0.01
96 1 0.01
97 70 0.63
98 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (92 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCTAGGAAAATAAGATTTGATGCC
TCCAGCTTTAATCTACTCCGACGCCAA
Found at i:157802 original size:143 final size:143
Alignment explanation
Indices: 157627--157891 Score: 370
Period size: 143 Copynumber: 1.9 Consensus size: 143
157617 AAACCATCCC
* * * ** *
157627 ACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGTGACG-CTAGAGAAA
1 ACTGCGACGCTAGGAAAATAAGATTCGATGCCTTCAGCTTTAATCTACTCCGACGCCAAG-GAAA
* * ** *
157691 TAAGATTTGTTGGCTCCAGCTTTAATCTGTTCCACTGTAACGCCAAGGAAATGAGATTCGCTGCC
65 TAAGATTTGTTGCCTCCAGCTTTAATCTATTCCACTACAACGCCAAAGAAATGAGATTCGCTGCC
157756 TTTAGCTTTAATCT
130 TTTAGCTTTAATCT
* * *
157770 ACTGCGACGCTAGGAAAATAAGATTTGATGCCTTCAGCTTTCATCTACTCCGATGCCAAGGAAAT
1 ACTGCGACGCTAGGAAAATAAGATTCGATGCCTTCAGCTTTAATCTACTCCGACGCCAAGGAAAT
* *
157835 AAGATTTGTTGCCTTCAGCTTTAATCTATTCCACTACAACGCTAAAGAAATGAGATT
66 AAGATTTGTTGCCTCCAGCTTTAATCTATTCCACTACAACGCCAAAGAAATGAGATT
157892 ATTGGCTTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
143 102 0.97
144 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (143 bp):
ACTGCGACGCTAGGAAAATAAGATTCGATGCCTTCAGCTTTAATCTACTCCGACGCCAAGGAAAT
AAGATTTGTTGCCTCCAGCTTTAATCTATTCCACTACAACGCCAAAGAAATGAGATTCGCTGCCT
TTAGCTTTAATCT
Found at i:158117 original size:470 final size:475
Alignment explanation
Indices: 157359--158336 Score: 1452
Period size: 470 Copynumber: 2.1 Consensus size: 475
157349 GCGACACCAG
* *
157359 GGAAATAAGATTTGCTGCCTTTAGCTTTAATCTGTTCCACTACAACGCAAAAGAAATAAGATTAT
1 GGAAATAAGATTTGCTGCCTTCAGCTTTAATCTATTCCACTACAACGCAAAAGAAATAAGATTAT
* *
157424 CGGCTTTAATCTACTCCACTGCAACTTCAGGGTTATAAGATTCGTCATCTTCTTCAAACCATTCC
66 CGGCTTTAATCTACTCCACTGCAACTTCAGGGATATAAGATTCATCATCTTCTTCAAACCATTCC
* *
157489 ACTACGATGCTAGGAAAATAAGATTTGTCTCTTCAACCTGCCCCACTGCAACTTTAGAGGGATAA
131 ACTACAATGCTAGGAAAATAAGATTTGTCTCTTCAACCTGCCCCACTGCAACTTCAGAGGGATAA
*
157554 TGTTTGTGGCTTTAATCTGCTCCACTGAAACTTAATAGAGATAAGATCTGCCATGATAACCTCAA
196 GGTTTGTGGCTTTAATCTGCTCCACTGAAACTTAATAGAGATAAGATCTGCCATGATAACCTCAA
***
157619 ACCATCCCACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTT-AA-TCTACTGTGACG
261 ACCATCCCACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAAATTCTACTACAACG
* * * * * *
157682 -CTAGAGAAATAAGATTTGTTGGCTCCAGCTTTAATCTGTTCCACTGTAACGCCAAGGAAATGAG
326 CCAAG-GAAATAAGATTTATTGCCTCCAGCTTTAATATGTTCCACTGCAACGCCAAGGAAATAAG
* * * *
157746 ATTCGCTGCCTTTAGCTTTAATCTACTGC-GACGCTAG-GAAAATAAGATTTGATGCCTTCAGC-
390 ATTCACTGCCTTAAGCTTTAATCTACT-CTGACGCCAGCG-AAATAAGATTTGATGCCTTCAACT
* * *
157808 TT-TCA-TCTACTCCGATGCCAA
453 TTATCAGTCAACTCCAACGCCAA
* * *
157829 GGAAATAAGATTTGTTGCCTTCAGCTTTAATCTATTCCACTACAACGCTAAAGAAATGAGATTAT
1 GGAAATAAGATTTGCTGCCTTCAGCTTTAATCTATTCCACTACAACGCAAAAGAAATAAGATTAT
* *
157894 TGGCTTTAATCTACTCCACTGCAACTTTAGGGATATAAGATTCATCATCTTCTTCAAACCATTCC
66 CGGCTTTAATCTACTCCACTGCAACTTCAGGGATATAAGATTCATCATCTTCTTCAAACCATTCC
** * *
157959 ACTGTAACTTC-AGGAAAATAATATTTGTCTCTTCAACCTGCCCCACTGCAACTTCAGAGGGATA
131 ACTACAA-TGCTAGGAAAATAAGATTTGTCTCTTCAACCTGCCCCACTGCAACTTCAGAGGGATA
158023 AGGTTTGTGGCTTTAATCTGCTCCACTGAAACTTAATAGAGATAAGATCTGCCATGATAACCTCA
195 AGGTTTGTGGCTTTAATCTGCTCCACTGAAACTTAATAGAGATAAGATCTGCCATGATAACCTCA
158088 AACCATCCCACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAAACTGTTCTACTAC
260 AACCATCCCACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAAA---TTCTACTAC
* * * *
158153 AATGCCAAGGAAATAATATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAAT
322 AACGCCAAGGAAATAAGATTTATTGCCTCCAGCTTTAATATGTTCCACTGCAACGCCAAGGAAAT
* *
158218 AAGATTCACTGCCTTAAGGTTTAATCTACTCTGACGCCAGCGAAATAAGATTTGCTGCCTTCAAC
387 AAGATTCACTGCCTTAAGCTTTAATCTACTCTGACGCCAGCGAAATAAGATTTGATGCCTTCAAC
*
158283 TTTAATCAGTTCAACTGCAACGCCAA
452 TTT-ATCAG-TCAACTCCAACGCCAA
*
158309 GGAAATGAGATTTGCTGCCTTCAGCTTT
1 GGAAATAAGATTTGCTGCCTTCAGCTTT
158337 CACCTAATGC
Statistics
Matches: 453, Mismatches: 41, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
470 290 0.64
471 4 0.01
474 1 0.00
475 111 0.25
476 6 0.01
478 3 0.01
480 38 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (475 bp):
GGAAATAAGATTTGCTGCCTTCAGCTTTAATCTATTCCACTACAACGCAAAAGAAATAAGATTAT
CGGCTTTAATCTACTCCACTGCAACTTCAGGGATATAAGATTCATCATCTTCTTCAAACCATTCC
ACTACAATGCTAGGAAAATAAGATTTGTCTCTTCAACCTGCCCCACTGCAACTTCAGAGGGATAA
GGTTTGTGGCTTTAATCTGCTCCACTGAAACTTAATAGAGATAAGATCTGCCATGATAACCTCAA
ACCATCCCACTGCGATGCTAGGGAAATAAGATTCGCTGCCTTCAGCTTTAAATTCTACTACAACG
CCAAGGAAATAAGATTTATTGCCTCCAGCTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGA
TTCACTGCCTTAAGCTTTAATCTACTCTGACGCCAGCGAAATAAGATTTGATGCCTTCAACTTTA
TCAGTCAACTCCAACGCCAA
Found at i:158287 original size:46 final size:46
Alignment explanation
Indices: 158205--158385 Score: 143
Period size: 46 Copynumber: 3.8 Consensus size: 46
158195 TTCCACTGCA
* ** *
158205 ACGCTAAGGAAATAAGATTCACTGCCTT-AAGGTTTAATCTACTCTG
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAA-CTTTAATCTACTCTG
* *
158251 ACGCC-AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTG
1 ACGCCAAG-GAAATAAGATTTGCTGCCTTCAACTTTAATC--TAC-TCTG
* * * * *
158300 CAACGCCAAGGAAATGAGATTTGCTGCCTTCAGCTTTCACCTAATGC-G
1 --ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCTACT-CTG
* * *
158348 ATGCCAAGGAAATAAGATTTGCTGCATTCAGCTTTAAT
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAAT
158386 TTATTCCACT
Statistics
Matches: 108, Mismatches: 18, Indels: 18
0.75 0.12 0.12
Matches are distributed among these distances:
45 2 0.02
46 62 0.57
47 2 0.02
48 3 0.03
49 5 0.05
51 32 0.30
52 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (46 bp):
ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCTACTCTG
Found at i:158411 original size:148 final size:148
Alignment explanation
Indices: 158110--159027 Score: 804
Period size: 148 Copynumber: 6.2 Consensus size: 148
158100 GCGATGCTAG
* * * * * *
158110 GGAAATAAGATTCGCTGCCTTCAGCTTTAAACTGTTCTACTACAATGCCAAGGAAATAATATTTA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTTG
* * * * * * ** * *
158175 TTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAAGGAAATAAGATTCACTGCCTTAAGGTTT
66 CTGCCTTTAGC-TT--TA-G-TCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTT
* *
158240 AATC---TACTCTG--ACGCC-A
126 AATCTGTTCCACTGCAACGCCAA
* * * * *
158257 GCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAATGAGATTT
1 G-GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTT
* * * * * *
158322 GCTGCCTTCAGCTTTCA-CCTAATGCGATGCCAAGGAAATAAGATTTGCTGCATTCAGCTTTAAT
65 GCTGCCTTTAGCTTT-AGTCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAAT
* * *
158386 TTATTCCACTGCAATGCCAA
129 CTGTTCCACTGCAACGCCAA
* * * ** * *
158406 GGAAAT-GGAATTCGCTGCTTTCAGCTTTAACCTGTTCCACTGCAACGCCGGGGAAATAAGAGTC
1 GGAAATAAG-ATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTT
* * * * * *
158470 G-TAGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAATAAGATTTGTTACCTTCTGCTTTACT
65 GCT-GCCTTTAGCTTTAGTCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAAT
* * *
158534 CTGTTCTACTGCAACGGCAG
129 CTGTTCCACTGCAACGCCAA
* *
158554 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACT-CAAACGCCAAGGAAATAAGATTC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGC-AACGCCAAGGAAATAAGATTT
* * * ** *
158618 ACCGCCTTTAGCTTTAGTCTATTGCGGTGCCAGGGAAATAAGA-TTCCTTGCCTTCAGCTTTAAT
65 GCTGCCTTTAGCTTTAGTCTACTGCGACGCCAGGGAAATAAGATTTGC-TGCCTTCAGCTTTAAT
*
158682 CTGTTCCACTACAACAG-CAA
129 CTGTTCCACTGCAAC-GCCAA
* * * * *
158702 GGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGGAAATAAGATTTG
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTTG
* * * * * * * * * *
158767 CTACCTTCAGCTTTAATTTACTGTGACGACATGGAAATAA-AGTTTGCTACCTTCAGTTTTATTC
66 CTGCCTTTAGCTTTAGTCTACTGCGACGCCAGGGAAATAAGA-TTTGCTGCCTTCAGCTTTAATC
158831 TGTTCCACTGCAACGCCAA
130 TGTTCCACTGCAACGCCAA
** * *
158850 GGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTCT
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT-T
* * ** * *
158915 -CTGCCTTTAACTTTAG-CTTACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGTTAAT
65 GCTGCCTTTAGCTTTAGTC-TACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAAT
* *
158978 CTGTTCCACTGTAATGCCAA
129 CTGTTCCACTGCAACGCCAA
* * * *
158998 GAAAATGAGATTCGCTGCATTAAGCTTTAA
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAA
159028 CCTACTGCGA
Statistics
Matches: 612, Mismatches: 136, Indels: 45
0.77 0.17 0.06
Matches are distributed among these distances:
143 36 0.06
145 1 0.00
146 6 0.01
147 11 0.02
148 548 0.90
149 10 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (148 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTTG
CTGCCTTTAGCTTTAGTCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATCT
GTTCCACTGCAACGCCAA
Found at i:158657 original size:296 final size:295
Alignment explanation
Indices: 158251--159030 Score: 908
Period size: 296 Copynumber: 2.6 Consensus size: 295
158241 ATCTACTCTG
*
158251 ACGCC-AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCAGTTCAACTGCAACGCCAAGGAAAT
1 ACGCCAAG-GAAATAAGATTTGCTGCCTTCAACTTTAATCTGTTCAACTGCAACGCCAAGGAAAT
* ** * * * * *
158315 GAGATTTGCTGCCTTCAGCTTTCACCTAATGCGATGCCAAGGAAATAAGATTTGCTGCATTCAGC
65 AAGATTCACTGCCTTTAGCTTT-AGCTAATGCGATGCCAGGGAAATAAGATTTACTGCCTTCAGC
* * *
158380 TTTAATTTATTCCACTGCAATGCCAAGGAAATG-GAATTCGCTGCTTTCAGCTTTAACCTGTTCC
129 TTTAATCTGTTCCACTGCAATGCCAAGGAAATGAG-ATTCGCTGCATTCAGCTTTAACCTGTTCC
** * * * *
158444 ACTGCAACGCCGGGGAAATAAGAGTCG-TAGGCTTTAGCTTTAGTCTACTGCGACGTCAGGGAAA
193 ACTGCAACGCCAAGGAAATAAGAGTCGCTA-CCTTCAGCTTTAATCTACTGCGACGACAGGGAAA
* * *
158508 T-AAGATTTGTTACCTTCTGCTTTACTCTGTTCTACTGCA
257 TAAAG-TTTGCTACCTTCAGCTTTACTCTGTTCCACTGCA
* * * * *
158547 ACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACT-CAAACGCCAAGGAAAT
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCTGTTCAACTGC-AACGCCAAGGAAAT
* * * *
158611 AAGATTCACCGCCTTTAGCTTTAGTCTATTGCGGTGCCAGGGAAATAAGA-TTCCTTGCCTTCAG
65 AAGATTCACTGCCTTTAGCTTTAG-CTAATGCGATGCCAGGGAAATAAGATTTAC-TGCCTTCAG
* * * *
158675 CTTTAATCTGTTCCACTACAACAG-CAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTC
128 CTTTAATCTGTTCCACTGCAA-TGCCAAGGAAATGAGATTCGCTGCATTCAGCTTTAACCTGTTC
* * * * * * *
158739 CACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAATTTACTGTGACGACATGGAAA
192 CACTGCAACGCCAAGGAAATAAGAGTCGCTACCTTCAGCTTTAATCTACTGCGACGACAGGGAAA
* *
158804 TAAAGTTTGCTACCTTCAGTTTTATTCTGTTCCACTGCA
257 TAAAGTTTGCTACCTTCAGCTTTACTCTGTTCCACTGCA
* * *
158843 ACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATA
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCTGTTCAACTGCAACGCCAAGGAAATA
* * * * * * * *
158908 AGATTCTCTGCCTTTAACTTTAGCTTACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCG
66 AGATTCACTGCCTTTAGCTTTAGC-TAATGCGATGCCAGGGAAATAAGATTTACTGCCTTCAGCT
* * *
158973 TTAATCTGTTCCACTGTAATGCCAAGAAAATGAGATTCGCTGCATTAAGCTTTAACCT
130 TTAATCTGTTCCACTGCAATGCCAAGGAAATGAGATTCGCTGCATTCAGCTTTAACCT
159031 ACTGCGACGC
Statistics
Matches: 406, Mismatches: 66, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
295 7 0.02
296 388 0.96
297 11 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (295 bp):
ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATCTGTTCAACTGCAACGCCAAGGAAATA
AGATTCACTGCCTTTAGCTTTAGCTAATGCGATGCCAGGGAAATAAGATTTACTGCCTTCAGCTT
TAATCTGTTCCACTGCAATGCCAAGGAAATGAGATTCGCTGCATTCAGCTTTAACCTGTTCCACT
GCAACGCCAAGGAAATAAGAGTCGCTACCTTCAGCTTTAATCTACTGCGACGACAGGGAAATAAA
GTTTGCTACCTTCAGCTTTACTCTGTTCCACTGCA
Found at i:158944 original size:46 final size:49
Alignment explanation
Indices: 158535--159107 Score: 175
Period size: 51 Copynumber: 11.6 Consensus size: 49
158525 TGCTTTACTC
* * * * * *
158535 TGTTCTACTGCAACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATC
1 TGTTC-ACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAACTTT-ATA
* * *
158586 TGTTCTACT-CAAACGCCAAGGAAATAAGATTCACCGCCTTTAGC-TT-TA
1 TGTTC-ACTGC-AACGCCAAGGAAATAAGATTCTCTGCCTTTAACTTTATA
* *** * * * *
158634 -G-TCTATTGCGGTGCCAGGGAAATAAGATTC-CTTGCCTTCAGCTTTAATC
1 TGTTC-ACTGCAACGCCAAGGAAATAAGATTCTC-TGCCTTTAACTTT-ATA
* * * * * *
158683 TGTTCCACTACAACAG-CAAGGAGATGAGATTCGCTGCCTTCAGCTTTA-A
1 TGTT-CACTGCAAC-GCCAAGGAAATAAGATTCTCTGCCTTTAACTTTATA
* * * * *
158732 CCTGTTCCACTGCAATGCTAAGGAAATAAGATT-TGCTACCTTCAGCTTTA-A
1 --TGTT-CACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTTAACTTTATA
** * * * * ** *
158783 T-TT-ACTGTGACGACATGGAAATAA-AGTT-TGCTACCTTCAGTTTTATTC
1 TGTTCACTGCAACGCCAAGGAAATAAGA-TTCT-CTGCCTTTAACTTTA-TA
*
158831 TGTTCCACTGCAACGCCAAGGAAATAAGATT-TACTGCCTTCAACTTTAATA
1 TGTT-CACTGCAACGCCAAGGAAATAAGATTCT-CTGCCTTTAACTTT-ATA
158882 TGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAAC-TT-TA
1 TGTT-CACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAACTTTATA
* * * * * * *
158930 -GCTT-ACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCGTTAATC
1 TG-TTCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAAC-TTTATA
* * * * * *
158979 TGTTCCACTGTAATGCCAAGAAAATGAGATTCGCTG-CATTAAGCTTTA-A
1 TGTT-CACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAA-CTTTATA
** * * * * * * ** *
159028 -CCT-ACTGCGACGCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
1 TGTTCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAACTTT-ATA
**
159076 TGTTCCACTGCAACGCTTAGGAAATAAGATTC
1 TGTT-CACTGCAACGCCAAGGAAATAAGATTC
159108 GATGCCTTCA
Statistics
Matches: 397, Mismatches: 87, Indels: 76
0.71 0.16 0.14
Matches are distributed among these distances:
45 2 0.01
46 121 0.30
47 9 0.02
48 10 0.03
49 8 0.02
50 16 0.04
51 225 0.57
52 6 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (49 bp):
TGTTCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTTAACTTTATA
Found at i:159101 original size:296 final size:294
Alignment explanation
Indices: 158251--159123 Score: 850
Period size: 296 Copynumber: 2.9 Consensus size: 294
158241 ATCTACTCTG
158251 ACGCC-AGCGAAATAAGATTTGCTGCCTTCAACTTTAATCA-GTTCAACTGCAACGCCAAGGAAA
1 ACGCCAAG-GAAATAAGATTTGCTGCCTTCAACTTTAAT-ATGTTCAACTGCAACGCCAAGGAAA
* * * * * *
158314 TGAGATT-TGCTGCCTTCAGCTTTCA-CCTAATGCGATGCCAAGGAAATAAGATTTGCTGCATTC
64 TAAGATTCT-CTGCCTTTAGCTTT-AGCTTAATGCGATGCCAGGGAAATAAGA-TTCCTGCCTTC
* * *
158377 AGCTTTAATTTATTCCACTGCAATGCCAAGGAAATG-GAATTCGCTGCTTTCAGCTTTAACCTGT
126 AGCTTTAATCTGTTCCACTGCAATGCCAAGGAAATGAG-ATTCGCTGCATTCAGCTTTAACC--T
** * * * *
158441 TCCACTGCAACGCCGGGGAAATAAGAGTCGTAGGCTTTAGCTTT-A-G-TCTACTGCGACG-TCA
188 T-CACTGCAACGCTAGGGAAATAAGATTCCT-GGCTTCAGCTTTAATGTTC-ACTGCGACGCTTA
* * *
158502 GGGAAAT-AAGATTTGTTACCTTCTGCTTTACTCTGTTCTACTGCA
250 -GGAAATAAAGATTTGCTACCTTCAGCTTTACTCTGTTCCACTGCA
* * * * * *
158547 ACGGCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACT-CAAACGCCAAGGAAAT
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATATGTTCAACTGC-AACGCCAAGGAAAT
* * * *
158611 AAGATTCACCGCCTTTAGCTTTAG-TCTATTGCGGTGCCAGGGAAATAAGATTCCTTGCCTTCAG
65 AAGATTCTCTGCCTTTAGCTTTAGCT-TAATGCGATGCCAGGGAAATAAGATTCC-TGCCTTCAG
* * * *
158675 CTTTAATCTGTTCCACTACAACAG-CAAGGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTC
128 CTTTAATCTGTTCCACTGCAA-TGCCAAGGAAATGAGATTCGCTGCATTCAGCTTTAACC--TT-
* * * ** * *
158739 CACTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAGCTTTAAT-TT-ACTGTGACGACAT-GG
189 CACTGCAACGCTAGGGAAATAAGA-TTCCTGGCTTCAGCTTTAATGTTCACTGCGACG-CTTAGG
* *
158801 AAATAAAG-TTTGCTACCTTCAGTTTTATTCTGTTCCACTGCA
252 AAATAAAGATTTGCTACCTTCAGCTTTACTCTGTTCCACTGCA
* *
158843 ACGCCAAGGAAATAAGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATA
1 ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATATGTTCAACTGCAACGCCAAGGAAATA
* * * * * *
158908 AGATTCTCTGCCTTTAACTTTAGCTTACTGCGACGCCAGGGATATAAGATTCACTGCCTTTAGCG
66 AGATTCTCTGCCTTTAGCTTTAGCTTAATGCGATGCCAGGGAAATAAGATTC-CTGCCTTCAGCT
* * *
158973 TTAATCTGTTCCACTGTAATGCCAAGAAAATGAGATTCGCTGCATTAAGCTTTAACC-T-ACTGC
130 TTAATCTGTTCCACTGCAATGCCAAGGAAATGAGATTCGCTGCATTCAGCTTTAACCTTCACTGC
* * *
159036 GACGCTAGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTAGGAAAT
195 AACGCTAGGGAAATAAGATTC-CTGGCTTCAGCTTTAA--TGTT-CACTGCGACGCTTAGGAAAT
* * *
159101 -AAGATTCGATGCCTTCAGCTTTA
256 AAAGATTTGCTACCTTCAGCTTTA
159124 ATCTATTACG
Statistics
Matches: 472, Mismatches: 77, Indels: 56
0.78 0.13 0.09
Matches are distributed among these distances:
290 2 0.00
291 33 0.07
293 2 0.00
294 2 0.00
295 11 0.02
296 409 0.87
297 12 0.03
298 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (294 bp):
ACGCCAAGGAAATAAGATTTGCTGCCTTCAACTTTAATATGTTCAACTGCAACGCCAAGGAAATA
AGATTCTCTGCCTTTAGCTTTAGCTTAATGCGATGCCAGGGAAATAAGATTCCTGCCTTCAGCTT
TAATCTGTTCCACTGCAATGCCAAGGAAATGAGATTCGCTGCATTCAGCTTTAACCTTCACTGCA
ACGCTAGGGAAATAAGATTCCTGGCTTCAGCTTTAATGTTCACTGCGACGCTTAGGAAATAAAGA
TTTGCTACCTTCAGCTTTACTCTGTTCCACTGCA
Found at i:159125 original size:51 final size:51
Alignment explanation
Indices: 159031--159182 Score: 167
Period size: 51 Copynumber: 3.1 Consensus size: 51
159021 GCTTTAACCT
* *
159031 ACTGCGACGC-TAGGGAAATAAGATTC-ACTGGCTTCAGGTTTAATCTGTTCC
1 ACTGC-ACGCTTAGGGAAATAAGATTCGA-TGCCTTCAGCTTTAATCTGTTCC
*
159082 ACTGCAACGCTTA-GGAAATAAGATTCGATGCCTTCAGCTTTAATCTATT--
1 ACTGC-ACGCTTAGGGAAATAAGATTCGATGCCTTCAGCTTTAATCTGTTCC
* * *
159131 AC-G-ACG-TTAGGGAAATGAGATTCGCTGCCTTCAGCTTTAATTTGTTCC
1 ACTGCACGCTTAGGGAAATAAGATTCGATGCCTTCAGCTTTAATCTGTTCC
159179 ACTG
1 ACTG
159183 TGATGCCAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
45 3 0.03
46 35 0.40
48 3 0.03
49 3 0.03
51 40 0.46
52 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (51 bp):
ACTGCACGCTTAGGGAAATAAGATTCGATGCCTTCAGCTTTAATCTGTTCC
Found at i:159160 original size:46 final size:46
Alignment explanation
Indices: 159000--159171 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 46
158990 AATGCCAAGA
* * * * * * *
159000 AAATGAGATTCGCTGCATTAAGCTTTAACCTACTGCGACGCTAGGG
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTATTACGACGTTAGGG
* * * *
159046 AAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTTA-GG
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTATT--AC-G--ACG-TTAGGG
*
159097 AAATAAGATTCGATGCCTTCAGCTTTAATCTATTACGACGTTAGGG
1 AAATAAGATTCGCTGCCTTCAGCTTTAATCTATTACGACGTTAGGG
*
159143 AAATGAGATTCGCTGCCTTCAGCTTTAAT
1 AAATAAGATTCGCTGCCTTCAGCTTTAAT
159172 TTGTTCCACT
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
45 3 0.03
46 57 0.56
48 2 0.02
49 3 0.03
51 34 0.34
52 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (46 bp):
AAATAAGATTCGCTGCCTTCAGCTTTAATCTATTACGACGTTAGGG
Found at i:159203 original size:97 final size:97
Alignment explanation
Indices: 158110--159182 Score: 645
Period size: 97 Copynumber: 10.9 Consensus size: 97
158100 GCGATGCTAG
* * * * * * * *
158110 GGAAATAAGATTCGCTGCCTTCAGCTTTAAACTGTTCTACTACAATGCCAAGGAAATAATATTTA
1 GGAAATAAGATTCGCTGCCTTAAGCTTT-AAC----CTACTGCGACGCTAGGGAAATAAGATTCA
* * *
158175 TTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAA
61 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * **
158212 GGAAATAAGATTCACTGCCTTAAGGTTTAATCTACT-CTGACGCCAGCGAAATAAGATTTGCTGC
1 GGAAATAAGATTCGCTGCCTTAAGCTTTAACCTACTGC-GACGCTAGGGAAATAAGATTCACTGC
* * *
158276 CTTCAACTTTAATCAGTTCAACTGCAACGCCAA
65 CTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * ** *
158309 GGAAATGAGATTTGCTGCCTTCAGCTTTCACCTAATGCGATGCCAAGGAAATAAGATTTGCTGCA
1 GGAAATAAGATTCGCTGCCTTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGCC
* * *
158374 TTCAGCTTTAATTTATTCCACTGCAATGCCAA
66 TTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * ** *
158406 GGAAAT-GGAATTCGCTGCTTTCAGCTTTAACCTGTTCCACTGCAACGCCGGGGAAATAAGAGTC
1 GGAAATAAG-ATTCGCTGCCTTAAGCTTTAACC---T--ACTGCGACGCTAGGGAAATAAGATTC
* * * * * * *
158470 -GTAGGCTTTAGCTTT-A---G-TCTACTGCGACGTCAG
60 ACT-GCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * ** * *
158503 GGAAATAAGATTTGTTACCTTCTGCTTTACTCTGTTCTACTGCAACGGC-AGGGAAATAAGATTC
1 GGAAATAAGATTCGCTGCCTTAAGCTTTA-AC----CTACTGCGAC-GCTAGGGAAATAAGATTC
* *
158567 GCTGCCTTCAGCTTTAATCTGTTCTACT-CAAACGCCAA
60 ACTGCCTTCAGCTTTAATCTGTTCCACTGC-AACGCCAA
* * * ** * ** *
158605 GGAAATAAGATTCACCGCCTTTAGCTTTAGTCTATTGCGGTGCCAGGGAAATAAGATTC-CTTGC
1 GGAAATAAGATTCGCTGCCTTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCAC-TGC
*
158669 CTTCAGCTTTAATCTGTTCCACTACAACAG-CAA
65 CTTCAGCTTTAATCTGTTCCACTGCAAC-GCCAA
* * * * * * **
158702 GGAGATGAGATTCGCTGCCTTCAGCTTTAACCTGTTCCACTGCAATGCTAAGGAAATAAGATTTG
1 GGAAATAAGATTCGCTGCCTTAAGCTTTAACC---T--ACTGCGACGCTAGGGAAATAAGATTCA
* ** * *
158767 CTACCTTCAGCTTTAA--T-TT--ACTGTGACGACAT
61 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * * * *
158799 GGAAATAA-AGTTTGCTACCTTCAGTTTTATTCTGTTCCACTGCAACGCCAAGGAAATAAGATTT
1 GGAAATAAGA-TTCGCTGCCTTAAGCTTTA-AC----CTACTGCGACGCTAGGGAAATAAGATTC
* *
158863 ACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAA
60 ACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * *
158901 GGAAATAAGATTCTCTGCCTTTAA-CTTTAGCTTACTGCGACGCCAGGGATATAAGATTCACTGC
1 GGAAATAAGATTCGCTGCC-TTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGC
* * * *
158965 CTTTAGCGTTAATCTGTTCCACTGTAATGCCAA
65 CTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * *
158998 GAAAATGAGATTCGCTGCATTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGGC
1 GGAAATAAGATTCGCTGCCTTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGCC
* **
159063 TTCAGGTTTAATCTGTTCCACTGCAACGCTTA
66 TTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * * * *
159095 GGAAATAAGATTCGATGCCTTCAGCTTTAATCTATTACGACGTTAGGGAAATGAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGCC
*
159160 TTCAGCTTTAATTTGTTCCACTG
66 TTCAGCTTTAATCTGTTCCACTG
159183 TGATGCCAAA
Statistics
Matches: 757, Mismatches: 166, Indels: 101
0.74 0.16 0.10
Matches are distributed among these distances:
96 11 0.01
97 566 0.75
98 10 0.01
99 4 0.01
100 5 0.01
101 7 0.01
102 149 0.20
103 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (97 bp):
GGAAATAAGATTCGCTGCCTTAAGCTTTAACCTACTGCGACGCTAGGGAAATAAGATTCACTGCC
TTCAGCTTTAATCTGTTCCACTGCAACGCCAA
Found at i:161860 original size:46 final size:45
Alignment explanation
Indices: 161789--162157 Score: 272
Period size: 46 Copynumber: 7.7 Consensus size: 45
161779 NNNNNCTAGG
161789 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAGA
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCA-A
* * *
161835 GAAATCAGATTCGCTGCCTTTAGCTTTAATCTATTCCACTACAACGCCAA
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAA
* * *
161885 GGAAATGAGATTCGCTGCCTTCAACTTTAATCTACTGCGACGCCAA
1 -GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAA
* * * * * *
161931 GTAAATAAGATTTGCTGCCCTCAACATTAATCTGTTTCACTACAACACCAA
1 G-AAATAAGATTCGCTGCCTTCAGCTTTAATC----T-ACTGCAACGCCAA
* ** *
161982 GAAA-AGGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGTCGCCAG
1 GAAATA--AGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAA
* * *
162028 GAAAATAAGATTTGCTGCCTTCAGCTTTAATCTATTCCACTACAACACCAA
1 G-AAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAA
* * * * * * *
162079 GGGAACAAGATTCGCTGCCTTTAGCTGTAATCTACTGCGACACCAGG
1 -GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCA-A
* *
162126 GAAATAAGATTTGCTGCCTTTAGCTTTAATCT
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCT
162158 GTTCCACTAC
Statistics
Matches: 256, Mismatches: 44, Indels: 46
0.74 0.13 0.13
Matches are distributed among these distances:
45 1 0.00
46 136 0.53
47 4 0.02
48 3 0.01
49 3 0.01
50 5 0.02
51 103 0.40
52 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (45 bp):
GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAA
Found at i:161961 original size:97 final size:96
Alignment explanation
Indices: 161788--162187 Score: 503
Period size: 97 Copynumber: 4.1 Consensus size: 96
161778 NNNNNNCTAG
* * *
161788 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAGAGAAATCAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCA-AGAAATAAGATTTGCTGCC
* *
161853 TTTAGCTTTAATCTATTCCACTACAACGCCAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
* *
161885 GGAAATGAGATTCGCTGCCTTCAACTTTAATCTACTGCGACGCCAAGTAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-AAATAAGATTTGCTGCC
* * * * *
161950 CTCAACATTAATCTGTTTCACTACAACACCAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
* ** * * *
161982 GAAAAGGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGTCGCCAGGAAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAG-AAATAAGATTTGCTGCC
162047 TTCAGCTTTAATCTATTCCACTACAACACCAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
* * * * * *
162079 GGGAACAAGATTCGCTGCCTTTAGCTGTAATCTACTGCGACACCAGGGAAATAAGATTTGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCA-AGAAATAAGATTTGCTGCC
* * * *
162144 TTTAGCTTTAATCTGTTCCACTACAACGCAAA
65 TTCAGCTTTAATCTATTCCACTACAACACCAA
*
162176 AGAAATAAGATT
1 GGAAATAAGATT
162188 ATCGGCTTTA
Statistics
Matches: 261, Mismatches: 40, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
96 2 0.01
97 257 0.98
98 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (96 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAAGAAATAAGATTTGCTGCCT
TCAGCTTTAATCTATTCCACTACAACACCAA
Found at i:162457 original size:46 final size:45
Alignment explanation
Indices: 162407--162679 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 45
162397 CGATGCTAGG
* *
162407 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTGTGACGCTAGA
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTGCGACGCCA-A
* * * * * **
162453 GAAATAAGATTTGTTGGCTCCAGGTTTAATCTGTTCCACTGTAACGCCAA
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTG-----CTGCGACGCCAA
* * * * *
162503 GGAAATGAGATTTGCTGCCTTTAGCTTTAATCTACTGCGACACCAA
1 -GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTGCGACGCCAA
* * * *
162549 GAAAATAAGATTCACTGCCTTCAGCTTTAATTTGTTCCACTACAACGCCAA
1 G-AAATAAGATTCGCTGCCTTCAGCTTTAATCTG-----CTGCGACGCCAA
** * * *
162600 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCGACACTAGG
1 -GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTGCGACGCCA-A
162647 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
162680 TTCTACTACA
Statistics
Matches: 177, Mismatches: 36, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
45 1 0.01
46 101 0.57
50 1 0.01
51 73 0.41
52 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (45 bp):
GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTGCGACGCCAA
Found at i:162514 original size:97 final size:97
Alignment explanation
Indices: 162406--162727 Score: 412
Period size: 97 Copynumber: 3.3 Consensus size: 97
162396 GCGATGCTAG
* * * * * *
162406 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTGTGACGCTAGAGAAATAAGATTTGTTGGC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACACTAGAGAAATAAGATTCGCTGCC
* * **
162471 TCCAGGTTTAATCTGTTCCACTGTAACGCCAA
66 TTCAGCTTTAATCTGTTCCACTACAACGCCAA
* * * * *
162503 GGAAATGAGATTTGCTGCCTTTAGCTTTAATCTACTGCGACACCA-AGAAAATAAGATTCACTGC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACACTAGAG-AAATAAGATTCGCTGC
*
162567 CTTCAGCTTTAATTTGTTCCACTACAACGCCAA
65 CTTCAGCTTTAATCTGTTCCACTACAACGCCAA
* *
162600 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATTGCGACACTAGGGAAATAAGATTCGCTGCC
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACACTAGAGAAATAAGATTCGCTGCC
* *
162665 TTCAGCTTTAATCTGTTCTACTACAATGCCAA
66 TTCAGCTTTAATCTGTTCCACTACAACGCCAA
* ***
162697 GGAAATAATATTTATTGCCTTCAGCTTTAAT
1 GGAAATAAGATTCGCTGCCTTCAGCTTTAAT
162728 ATGTTCCACT
Statistics
Matches: 193, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
96 2 0.01
97 190 0.98
98 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (97 bp):
GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACACTAGAGAAATAAGATTCGCTGCC
TTCAGCTTTAATCTGTTCCACTACAACGCCAA
Found at i:162532 original size:51 final size:51
Alignment explanation
Indices: 162406--162780 Score: 296
Period size: 51 Copynumber: 7.6 Consensus size: 51
162396 GCGATGCTAG
* ** *
162406 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG-----CTGTGACG-CTA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
*** * * * *
162451 GAGAAATAAGATTTGTTGGCTCCAGGTTTAATCTGTTCCACTGTAACGCCAA
1 G-GAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* ** * * *
162503 GGAAATGAGATTTGCTGCCTTTAGCTTTAATC---T--ACTGCGACACCAA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * *
162549 GAAAATAAGATTCACTGCCTTCAGCTTTAATTTGTTCCACTACAACGCCAA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * * *
162600 GGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ATTGCGACACTAG
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * *
162646 GGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCTACTACAATGCCAA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* * * * *
162697 GGAAATAATATTTATTGCCTTCAGCTTTAATATGTTCCACTGCAACGCTAA
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
* *
162748 GGAAATAAGATTCACTGCCTTAAGGTTTAATCT
1 GGAAATAAGATTCACTGCCTTCAGCTTTAATCT
162781 ACTCTGACGC
Statistics
Matches: 257, Mismatches: 56, Indels: 28
0.75 0.16 0.08
Matches are distributed among these distances:
45 1 0.00
46 103 0.40
48 2 0.01
49 2 0.01
51 146 0.57
52 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (51 bp):
GGAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA
Found at i:163213 original size:51 final size:51
Alignment explanation
Indices: 163131--167259 Score: 2251
Period size: 51 Copynumber: 85.1 Consensus size: 51
163121 NNNNNNNNNN
* * *
163131 AGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * **
163181 GGAATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCGGGGAAATA
1 AG-ATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * * * *
163233 AGAGTCGTTGGCTTTAGCTTT-A---G-TCTACTGCGACGTCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
163279 AGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACAG-CAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAAC-GCCAAGGAAATA
* * * *
163330 AGATTCGCTGCCTTCAGCTTTAATCTATTCTACTGAAACGCCAAGGAAGTA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * * *** *
163381 AGATTCACCGCCTTTACCTTT-A---G-TCTATTGCGGTGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * *
163427 AGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATG
1 AGATTCGC-TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
163478 AGATTCGCCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * ** * *
163529 AGATTTGCTACCTTCAACTTTAA--T-TT--ACTGTGACGACATGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* *
163575 A-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * *
163626 AGATTTACTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
163677 AGATTCTCTGCCTTCAAC-TT--T-TGCTT--ACTGCGACGCTAGGGATATA
1 AGATTCGCTGCCTTCAGCTTTAATCTG-TTCCACTGCAACGCCAAGGAAATA
* * * * * * *
163723 AGATTCACTGCCTTTAGCCTTAATTTGTTCCACTGCAATGCCAAGAAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * **
163774 AGATTCGCTGCATTCAGCTTTAA-C----CTACTGCGACGCCCGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
163820 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAATGCCAAGAAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * **
163871 AGATTCGCTGCATTCAGCTTTAA-C----CTACTGCGACGCCCGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * *
163917 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
163968 AGATTCACCGCCTTCAGCTTTAATC---T--ACTGCAACACCAGGGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * *
164014 AGATTCGCTGCCTTCAAG-TTTAATC---T--ACTACGACTCC-AGGTAAATA
1 AGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATA
* * * **
164060 AGATTGGCTGCCTTTAGCTTTAATCTGTTCCACTGCAACACTGAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * *
164111 AGATTCACCGCCTTCAGCTTTAATC---T--ACTGCAACGCC-AGAGAAATC
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATA
* * * *
164157 AGATTCGCTGCCTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * *
164208 AGATTCGCTGCCTTCAAG-TTTAATC---T--ACTACGACTCCAGGGAAATA
1 AGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
164254 AGATTGGCTGCCTTTAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
164305 AGATTCGCCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * ** * *
164356 AGATTTGCTACCTTCAACTTTAA--T-TT--ACTGTGACGACATGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * *
164402 A-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
164453 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * *
164499 AGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
164549 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
* * * * *
164596 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * * *
164647 AGATTCACTGCCTTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * * *
164693 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
164744 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * *
164790 AGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
164840 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
* * * * *
164887 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * * *
164938 AGATTCACTGCCTTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * * *
164984 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
165035 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * *
165081 AGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
165131 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
* * * * *
165178 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * * *
165229 AGATTCACTGCCTTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * * *
165275 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
165326 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * *
165372 AGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
165422 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
* * * * *
165469 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * * *
165520 AGATTCACTGCCTTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * * *
165566 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
165617 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * *
165663 AGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
165713 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
* * * * *
165760 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * * *
165811 AGATTCACTGCCTTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * * *
165857 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
165908 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * *
165954 AGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
166004 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
* * * * *
166051 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATA
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * * *
166102 AGATTCACTGCCTTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * * *
166148 AGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
166199 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * * *
166245 AGATTTACTACATTCAGCTTTAATCAGTTCCACTGCAATGCCAGGGAAA-A
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** *
166295 GAGATTTGCTGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATA
1 -AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATA
** * * *
166342 AGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAACG-CAATCGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATA
* * *
166393 AGATTCACTGCCTTCAGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATA
* * **
166439 AGATTCACTG-CTTCAGCTTTAATCTGTTCTACTGCAACGAAAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
166489 AGATTCGCGGCCTTCAGGTTTAATC---T--ACAGCGACGCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * ** *
166535 AAATTCGCTGGCTTCAACTTTAATCTGTTCCACTGCAACGCTGAGGGAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
166586 AGACTCG-TGTCCTTCTGATTTAATC---T--ACTGCCACGCCAGGGAAATA
1 AGATTCGCTG-CCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * *
166632 AGATTCGCTGCCTTCAGCTTTAATCTACTGCGAC-GCTAATGCCAAAGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGC-AACGCCAAGGAAATA
* * * *
166684 AGATTCGCTGCCTTCAACTTTAA--T-TT--ACTACAACGGCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
166730 AGATTTGCTGCCTTTAGCTTTAATC---T--ACTGCGACTCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* *
166776 AGATTCGCTGCCTTCAGATTTAATCTGTTCCACTGCAACGCCAAAGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * *
166827 AGATTCGCTTCCTTCTGCTTTAATC---T--ACTTCGAC-CCCAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * *
166872 AGATTCGTTACCTTCAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* ** * *
166923 AGA-T---T-CATTCAGCTTTAATC---T--ACTGTGACCCCAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* *
166964 AGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * *
167015 AGATTCACTGCCTTCAGCTTTAATC---T--ACTGCGACGCTAGGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
** * * * * * * *
167061 AGATTTACTACCTTCAACTTGAATCTGTTTCACTGCAACGCGAGGGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* *** *
167112 AGATTCGCTGCCTTTAGCTTTAATC---T--ACTGTGGCG-CTAGGAAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATA
* * * * * *
167158 AGATTTGATGCCTTCAGCTTTCATC---T--ACTCCGATGCCAAGGAAATA
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
* * * * * * *
167204 AGATTTGTTGCCTTCAGCTTTAATCTATTCCACTACAACGCTAAAGAAATG
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
167255 AGATT
1 AGATT
167260 ATTGGCTTTA
Statistics
Matches: 3162, Mismatches: 623, Indels: 587
0.72 0.14 0.13
Matches are distributed among these distances:
41 18 0.01
42 1 0.00
43 1 0.00
44 1 0.00
45 65 0.02
46 1354 0.43
47 60 0.02
48 39 0.01
49 51 0.02
50 59 0.02
51 1460 0.46
52 53 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (51 bp):
AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA
Found at i:163402 original size:148 final size:148
Alignment explanation
Indices: 163131--167259 Score: 2092
Period size: 148 Copynumber: 28.4 Consensus size: 148
163121 NNNNNNNNNN
* * * * *
163131 AGATTTGCTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-GGAATTCGCTGCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG-ATTCGCTGCCT
** * ** * *
163195 TCAGCTTTAATCTGTTCCACTGCAACGCCGGGGAAATAAGAGTCGTTGGCTTTAGCTTTAGTCTA
65 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCTA
*
163260 CTGCGACGTCAGGGAAATA
130 CTGCGACGCCAGGGAAATA
* * * * * *
163279 AGATTTGTTGCCTTCTGCTTTACTCTGTTCTACTGCAACAG-CAGGGAAATAAGATTCGCTGCCT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAAC-GCCAAGGAAATAAGATTCGCTGCCT
* * * * * * *
163343 TCAGCTTTAATCTATTCTACTGAAACGCCAAGGAAGTAAGATTCACCGCCTTTACCTTTAGTCTA
65 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCTA
* **
163408 TTGCGGTGCCAGGGAAATA
130 CTGCGACGCCAGGGAAATA
* * * * *
163427 AGATTC-CTTGCCTTCAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCGCCGCCT
1 AGATTCGC-TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
* * * * ** * * * *
163491 TCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAACTTTAATTTA
65 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCTA
* * *
163556 CTGTGACGACATGGAAATA
130 CTGCGACGCCAGGGAAATA
* * **
163575 A-AGTTCGCTACCTTCAGTTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTTACTGCCT
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
* * * * *
163639 TCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAACTTTTG-CTT
65 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTC-T
* *
163703 ACTGCGACGCTAGGGATATA
129 ACTGCGACGCCAGGGAAATA
* * * * * * * *
163723 AGATTCACTGCCTTTAGCCTTAATTTGTTCCACTGCAATGCCAAGAAAATGAGATTCGCTGCATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
163788 CAGCTTTAA-C----CTACTGCGACGCCCGGGAAATAAGATTCACTGGCTTCAGGTTTAATCTGT
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A---G-
* * * * * *
163848 TCCACTGCAATGCCAAGAAAATG
126 TCTACTGCGACGCCAGGGAAATA
* * * ** * *
163871 AGATTCGCTGCATTCAGCTTTAA-C----CTACTGCGACGCCCGGGAAATAAGATTCACTGGCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * * *
163931 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCTAC
* * *
163996 TGCAACACCAGGGAAATG
131 TGCGACGCCAGGGAAATA
* * * *
164014 AGATTCGCTGCCTTCAAG-TTTAATC---T--ACTACGACTCC-AGGTAAATAAGATTGGCTGCC
1 AGATTCGCTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGATTCGCTGCC
* * ** * *
164072 TTTAGCTTTAATCTGTTCCACTGCAACACTGAGGAAATAAGATTCACCGCCTTCAGCTTTAATCT
64 TTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCT
* * *
164137 ACTGCAACGCCAGAGAAATC
129 ACTGCGACGCCAGGGAAATA
* * * *
164157 AGATTCGCTGCCTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAATGAGATTCGCTGCCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * * * ** *
164222 CAAG-TTTAATC---T--ACTACGACTCCAGGGAAATAAGATTGGCTGCCTTTAGCTTTAATCTG
66 C-AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A---G
* * * * * * *
164281 TTCCACTACAACGGCAAGGAGATG
126 -TCTACTGCGACGCCAGGGAAATA
* * * * * * *
164305 AGATTCGCCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATAAGATTTGCTACCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* ** * * * * *
164370 CAACTTTAA--T-TT--ACTGTGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGA-TTCACTGCCTTCAGCTTT-A---G
* * * *
164429 TTCCACTGCAACGCTAAGGAAATA
126 -TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
164453 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
164513 CAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
164577 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
* * * * * *
164596 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCC
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* * * * *
164659 TTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
64 TTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A--
* * * *
164718 TGTTCCACTGCAACGCTAAGGAAATA
125 -G-TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
164744 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
164804 CAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
164868 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
* * * * * *
164887 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCC
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* * * * *
164950 TTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
64 TTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A--
* * * *
165009 TGTTCCACTGCAACGCTAAGGAAATA
125 -G-TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
165035 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
165095 CAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
165159 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
* * * * * *
165178 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCC
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* * * * *
165241 TTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
64 TTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A--
* * * *
165300 TGTTCCACTGCAACGCTAAGGAAATA
125 -G-TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
165326 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
165386 CAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
165450 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
* * * * * *
165469 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCC
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* * * * *
165532 TTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
64 TTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A--
* * * *
165591 TGTTCCACTGCAACGCTAAGGAAATA
125 -G-TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
165617 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
165677 CAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
165741 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
* * * * * *
165760 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCC
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* * * * *
165823 TTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
64 TTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A--
* * * *
165882 TGTTCCACTGCAACGCTAAGGAAATA
125 -G-TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
165908 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * ** * *
165968 CAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
166032 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
* * * * * *
166051 AGAGTT-ACTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCC
1 AGA-TTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCC
* * * * *
166114 TTCCGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTGGCTTCAGGTTTAATC
64 TTCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A--
* * * *
166173 TGTTCCACTGCAACGCTAAGGAAATA
125 -G-TCTACTGCGACGCCAGGGAAATA
* * * * * * ** * *
166199 AGATTCACCGCCTTCAGCTTTAATC---T--ACTACGATGCCAGGGAAATAAGATTTACTACATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * * ** * *
166259 CAGCTTTAATCAGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTTTAATCTG
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTTTAGTCTA
*
166323 CTGTGACGCTC-GGGAAATA
130 CTGCGACGC-CAGGGAAATA
** * * * *
166342 AGATTTACTACCTTCAGCTTTAATCTGTTCCACTACAACG-CAATCGAAATAAGATTCACTGCCT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCGCTGCCT
* *
166406 TCAGTTTTAATCTAG-T--AC-G--ACGCCAGGGAAATAAGATTCACTG-CTTCAGCTTTAATCT
65 TCAGCTTTAATCT-GTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A---
* ** *
166464 GTTCTACTGCAACGAAAAGGAAATA
125 G-TCTACTGCGACGCCAGGGAAATA
* * * * * * *
166489 AGATTCGCGGCCTTCAGGTTTAATC---T--ACAGCGACGCCAGGGAAATAAAATTCGCTGGCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* ** * * * * * *
166549 CAACTTTAATCTGTTCCACTGCAACGCTGAGGGAATAAGACTC-GTGTCCTTCTGATTTAATCTA
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTG-CCTTCAGCTTTAGTCTA
*
166613 CTGCCACGCCAGGGAAATA
130 CTGCGACGCCAGGGAAATA
* * * * * *
166632 AGATTCGCTGCCTTCAGCTTTAATCTACTGCGAC-GCTAATGCCAAAGAAATGAGATTCGCTGCC
1 AGATTCGCTGCCTTCAGCTTTAATCT-GTTCCACTGC-AACGCCAAGGAAATAAGATTCGCTGCC
* * * * ** * *
166696 TTCAACTTTAA--T-TT--ACTACAACGGCAGGGAAATAAGATTTGCTGCCTTTAGCTTTAATCT
64 TTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCT
*
166756 ACTGCGACTCCAGGGAAATA
129 ACTGCGACGCCAGGGAAATA
* * *
166776 AGATTCGCTGCCTTCAGATTTAATCTGTTCCACTGCAACGCCAAAGAAATAAGATTCGCTTCCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* * * * ** * *
166841 CTGCTTTAATC---T--ACTTCGAC-CCCAGGAAATAAGATTCGTTACCTTCAACTTTAATCTGT
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT-A---G-
* * * *
166900 TCCACTGCAACGCCAAGGAAATG
126 TCTACTGCGACGCCAGGGAAATA
* ** * * *
166923 AGA-T---T-CATTCAGCTTTAATC---T--ACTGTGACCCCAGGGAAATAAGATTCGCTACCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* *
166978 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCACTGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCTAC
*
167043 TGCGACGCTAGGGAAATA
131 TGCGACGCCAGGGAAATA
** * * * * * * *
167061 AGATTTACTACCTTCAACTTGAATCTGTTTCACTGCAACGCGAGGGAAATGAGATTCGCTGCCTT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
* *** * *
167126 TAGCTTTAATC---T--ACTGTGGCG-CTAGGAAAATAAGATTTGA-TGCCTTCAGCTTTCA-TC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGA-TTCACTGCCTTCAGCTTT-AGTC
* * *
167183 TACTCCGATGCCAAGGAAATA
128 TACTGCGACGCCAGGGAAATA
* * * * * * *
167204 AGATTTGTTGCCTTCAGCTTTAATCTATTCCACTACAACGCTAAAGAAATGAGATT
1 AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
167260 ATTGGCTTTA
Statistics
Matches: 3062, Mismatches: 663, Indels: 517
0.72 0.16 0.12
Matches are distributed among these distances:
137 38 0.01
138 21 0.01
139 2 0.00
140 1 0.00
141 1 0.00
142 103 0.03
143 1163 0.38
144 125 0.04
145 32 0.01
146 36 0.01
147 120 0.04
148 1369 0.45
149 51 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (148 bp):
AGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTT
CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTTAGTCTAC
TGCGACGCCAGGGAAATA
Found at i:163422 original size:97 final size:97
Alignment explanation
Indices: 163138--167259 Score: 3107
Period size: 97 Copynumber: 42.5 Consensus size: 97
163128 NNNAGATTTG
* * * * *
163138 CTGCCTTCAGCTTTAATTTGTTCCACTGCAATGCCAAGGAAAT-GGAATTCGCTGCTTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAG-ATTCACTGCCTTCAGCTT
* * * *
163202 TAATCTGTTCCACTGCAACGCCGGGGAAATAAGAGTCG
65 TAATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
* * * * * * * *** *
163240 TTGGCTTTAGCTTT-A---G-TCTACTGCGACGTCAGGGAAATAAGATTTGTTGCCTTCTGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
163300 ACTCTGTTCTACTGCAACAG-CAGGGAAATAAGATTCG
66 A-----ATCTACTGCGAC-GCCAGGGAAATAAGATTCA
* * * * * * *
163337 CTGCCTTCAGCTTTAATCTATTCTACTGAAACGCCAAGGAAGTAAGATTCACCGCCTTTACCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * **
163402 AGTCTATTGCGGTGCCAGGGAAATAAGATTC-
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * * *
163433 CTTGCCTTCAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCGCCGCCTTCAGCTT
1 C-TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTT
* * * * * * **
163498 TAACCTGTTCCATTGCAATGCTAAGGAAATAAGATTTG
65 TAA-----TCTACTGCGACGCCAGGGAAATAAGATTCA
* * ** * * * * *
163536 CTACCTTCAACTTTAA--T-TT--ACTGTGACGACATGGAAATAA-AGTTCGCTACCTTCAGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGA-TTCACTGCCTTCAGCTT
* * *
163595 TAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTTA
65 TAATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
* * * *
163633 CTGCCTTCAACTTTAATATGTTCCACTGCAACGCCAAGGAAATAAGATTCTCTGCCTTCAACTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* *
163698 --TGCTTACTGCGACGCTAGGGATATAAGATTCA
66 AAT-C-TACTGCGACGCCAGGGAAATAAGATTCA
* * * * * * * *
163730 CTGCCTTTAGCCTTAATTTGTTCCACTGCAATGCCAAGAAAATGAGATTCGCTGCATTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* *
163795 AACCTACTGCGACGCCCGGGAAATAAGATTCA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * * * *
163827 CTGGCTTCAGGTTTAATCTGTTCCACTGCAATGCCAAGAAAATGAGATTCGCTGCATTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* *
163892 AACCTACTGCGACGCCCGGGAAATAAGATTCA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
163924 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * * *
163989 AATCTACTGCAACACCAGGGAAATGAGATTCG
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * ** *
164021 CTGCCTTCAAG-TTTAATC---T--ACTACGACTCC-AGGTAAATAAGATTGGCTGCCTTTAGCT
1 CTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGATTCACTGCCTTCAGCT
* * *
164079 TTAATCTGTTCCACTGCAAC-ACTGAGGAAATAAGATTCA
64 TTAATC---T--ACTGCGACGCCAG-GGAAATAAGATTCA
* * * *
164118 CCGCCTTCAGCTTTAATC---T--ACTGCAACGCC-AGAGAAATCAGATTCGCTGCCTTTAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATAAGATTCACTGCCTTCAGCTT
* * * * *
164177 TAATCTATTCCACTACAACGCCAAGGAAATGAGATTCG
65 TAATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
* * * * ** *
164215 CTGCCTTCAAG-TTTAATC---T--ACTACGACTCCAGGGAAATAAGATTGGCTGCCTTTAGCTT
1 CTGCCTTC-AGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTT
* * * * * * *
164274 TAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCG
65 TAATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
* * * * * ** * *
164312 CCGCCTTCAGCTTTAACCTGTTCCATTGCAATGCTAAGGAAATAAGATTTGCTACCTTCAACTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * * * *
164377 AATTTACTGTGACGACATGGAAATAA-AGTTCG
66 AATCTACTGCGACGCCAGGGAAATAAGA-TTCA
* * * *
164409 CTACCTTCAGTTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
164474 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * **
164506 CTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* *
164570 TAATCTGCTGTGACGCTC-GGGAAATAAGAGTT-A
65 TAATCTACTGCGACGC-CAGGGAAATAAGA-TTCA
* * * * * *
164603 CTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCCTTCCGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
164667 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
164700 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
164765 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * **
164797 CTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* *
164861 TAATCTGCTGTGACGCTC-GGGAAATAAGAGTT-A
65 TAATCTACTGCGACGC-CAGGGAAATAAGA-TTCA
* * * * * *
164894 CTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCCTTCCGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
164958 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
164991 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
165056 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * **
165088 CTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* *
165152 TAATCTGCTGTGACGCTC-GGGAAATAAGAGTT-A
65 TAATCTACTGCGACGC-CAGGGAAATAAGA-TTCA
* * * * * *
165185 CTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCCTTCCGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
165249 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
165282 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
165347 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * **
165379 CTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* *
165443 TAATCTGCTGTGACGCTC-GGGAAATAAGAGTT-A
65 TAATCTACTGCGACGC-CAGGGAAATAAGA-TTCA
* * * * * *
165476 CTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCCTTCCGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
165540 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
165573 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
165638 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * **
165670 CTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* *
165734 TAATCTGCTGTGACGCTC-GGGAAATAAGAGTT-A
65 TAATCTACTGCGACGC-CAGGGAAATAAGA-TTCA
* * * * * *
165767 CTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCCTTCCGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
165831 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
165864 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
165929 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * **
165961 CTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* *
166025 TAATCTGCTGTGACGCTC-GGGAAATAAGAGTT-A
65 TAATCTACTGCGACGC-CAGGGAAATAAGA-TTCA
* * * * * *
166058 CTACCTTCAGCTTTAATCTGTTCCACTACCACG-CAATCGAAATAAGATTCACTGCCTTCCGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
166122 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * *
166155 CTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
166220 AATCTACTACGATGCCAGGGAAATAAGATTTA
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * * **
166252 CTACATTCAGCTTTAATCAGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGCTGCCTTCAGCTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATA-AGATTCACTGCCTTCAGCTT
* * *
166316 TAATCTGCTGTGACGCTC-GGGAAATAAGATTTA
65 TAATCTACTGCGACGC-CAGGGAAATAAGATTCA
* * * *
166349 CTACCTTCAGCTTTAATCTGTTCCACTACAACG-CAATCGAAATAAGATTCACTGCCTTCAGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAA-GGAAATAAGATTCACTGCCTTCAGCTT
* *
166413 TAATCTAGTACGACGCCAGGGAAATAAGATTCA
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* ** * * *
166446 CTG-CTTCAGCTTTAATCTGTTCTACTGCAACGAAAAGGAAATAAGATTCGCGGCCTTCAGGTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
166510 AATCTACAGCGACGCCAGGGAAATAAAATTCG
66 AATCTACTGCGACGCCAGGGAAATAAGATTCA
* * ** * * * * *
166542 CTGGCTTCAACTTTAATCTGTTCCACTGCAACGCTGAGGGAATAAGACTC-GTGTCCTTCTGATT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTG-CCTTCAGCTT
* *
166606 TAATCTACTGCCACGCCAGGGAAATAAGATTCG
65 TAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * * * * *
166639 CTGCCTTCAGCTTTAATCTACTGCGAC-GCTAATGCCAAAGAAATGAGATTCGCTGCCTTCAACT
1 CTGCCTTCAGCTTTAATCT-GTTCCACTGC-AACGCCAAGGAAATAAGATTCACTGCCTTCAGCT
* * * * **
166703 TTAATTTACTACAACGGCAGGGAAATAAGATTTG
64 TTAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * * *
166737 CTGCCTTTAGCTTTAATC---T--ACTGCGACTCCAGGGAAATAAGATTCGCTGCCTTCAGATTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* ** *
166797 AATCTGTTCCACTGCAACGCCAAAGAAATAAGATTCG
66 AATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
* * * * * ** * *
166834 CTTCCTTCTGCTTTAATC---T--ACTTCGAC-CCCAGGAAATAAGATTCGTTACCTTCAACTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
166893 AATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCA
66 AATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
** * * * *
166930 -----TTCAGCTTTAATC---T--ACTGTGACCCCAGGGAAATAAGATTCGCTACCTTCAGCTTT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * *
166985 AATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCA
66 AATC---T--ACTGCGACGCCAGGGAAATAAGATTCA
* * * * * * *
167022 CTGCCTTCAGCTTTAATC---T--ACTGCGACGCTAGGGAAATAAGATTTACTACCTTCAACTTG
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
* * * *
167082 AATCTGTTTCACTGCAACGCGAGGGAAATGAGATTCG
66 AATC----T-ACTGCGACGCCAGGGAAATAAGATTCA
* *** * *
167119 CTGCCTTTAGCTTTAATC---T--ACTGTGGCG-CTAGGAAAATAAGATTTGA-TGCCTTCAGCT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGG-AAATAAGA-TTCACTGCCTTCAGCT
* * * * **
167177 TTCATCTACTCCGATGCCAAGGAAATAAGATTTG
64 TTAATCTACTGCGACGCCAGGGAAATAAGATTCA
* * * * * *
167211 TTGCCTTCAGCTTTAATCTATTCCACTACAACGCTAAAGAAATGAGATT
1 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
167260 ATTGGCTTTA
Statistics
Matches: 3293, Mismatches: 591, Indels: 278
0.79 0.14 0.07
Matches are distributed among these distances:
91 22 0.01
92 169 0.05
93 3 0.00
94 1 0.00
95 3 0.00
96 196 0.06
97 2607 0.79
98 128 0.04
99 9 0.00
100 5 0.00
101 2 0.00
102 146 0.04
103 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (97 bp):
CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATTCACTGCCTTCAGCTTT
AATCTACTGCGACGCCAGGGAAATAAGATTCA
Found at i:163921 original size:143 final size:143
Alignment explanation
Indices: 163769--167040 Score: 1405
Period size: 143 Copynumber: 22.5 Consensus size: 143
163759 AATGCCAAGA
* * * *
163769 AAATGAGATTCGCTGCATTCAGCTTTAACCTACTGCGACGCCCGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * *
163834 CAGGTTTAATCTGTTCCACTGCAATGCCAAGAAAATGAGATTCGCTGCATTCAGCTTTAACCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
* *
163899 TGCGACGCCCGGG
131 TACGACGCCAGGG
* * * * * * * *
163912 AAATAAGATTCACTGGCTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATAAGATTCACT
* *
163977 GCCTTCAGCTTTAATC---T--ACTGCAACACCAGGGAAATGAGATTCGCTGCCTTCAAG-TTTA
61 GCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTC-AGCTTTA
* * *
164036 ATCTACTACGACTCCAGGT
125 ACCTACTACGACGCCAGGG
* * * * * *
164055 AAATAAGATTGGCTGCCTTTAGCTTTAATCTGTTCCACTGCAAC-ACTGAGGAAATAAGATTCAC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAG-GGAAATAAGATTCAC
* * *
164119 CGCCTTCAGCTTTAATC---T--ACTGCAACGCC-AGAGAAATCAGATTCGCTGCCTTTAGCTTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG-GAAATGAGATTCGCTGCCTTCAGCTTT
* * *
164178 AATCTATTCCACTACAACGCCAAGG
124 AA-C----CTACTACGACGCCAGGG
* * * * **
164203 AAATGAGATTCGCTGCCTTCAAG-TTTAATCTACTACGACTCCAGGGAAATAAGATTGGCTGCCT
1 AAATAAGATTCGCTGCCTTC-AGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCT
* * * * *
164267 TTAGCTTTAATCTGTTCCACTACAACGGCAAGGAGATGAGATTCGCCGCCTTCAGCTTTAACCTG
65 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACC--
* * * * * *
164332 TTCCATTGCAATGCTAAGG
128 -T--ACTACGACGCCAGGG
* * * ** * * * * *
164351 AAATAAGATTTGCTACCTTCAACTTTAATTTACTGTGACGACATGGAAATAA-AGTTCGCTACCT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGA-TTCACTGCCT
* * * * * *
164415 TCAGTTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTA
65 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTA
*
164480 CTACGATGCCAGGG
130 CTACGACGCCAGGG
** * * * * * **
164494 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * * *
164558 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGAGTT-ACTACCTTCAGCTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGA-TTCGCTGCCTTCAGCTT
* * * **
164616 TAATCTGTTCCACTACCACGCAATCG
123 TAA-C----CTACTACGACGCCAGGG
* * * * * * *
164642 AAATAAGATTCACTGCCTTCCGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
164707 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
*
164772 TACGATGCCAGGG
131 TACGACGCCAGGG
** * * * * * **
164785 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * * *
164849 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGAGTT-ACTACCTTCAGCTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGA-TTCGCTGCCTTCAGCTT
* * * **
164907 TAATCTGTTCCACTACCACGCAATCG
123 TAA-C----CTACTACGACGCCAGGG
* * * * * * *
164933 AAATAAGATTCACTGCCTTCCGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
164998 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
*
165063 TACGATGCCAGGG
131 TACGACGCCAGGG
** * * * * * **
165076 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * * *
165140 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGAGTT-ACTACCTTCAGCTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGA-TTCGCTGCCTTCAGCTT
* * * **
165198 TAATCTGTTCCACTACCACGCAATCG
123 TAA-C----CTACTACGACGCCAGGG
* * * * * * *
165224 AAATAAGATTCACTGCCTTCCGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
165289 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
*
165354 TACGATGCCAGGG
131 TACGACGCCAGGG
** * * * * * **
165367 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * * *
165431 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGAGTT-ACTACCTTCAGCTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGA-TTCGCTGCCTTCAGCTT
* * * **
165489 TAATCTGTTCCACTACCACGCAATCG
123 TAA-C----CTACTACGACGCCAGGG
* * * * * * *
165515 AAATAAGATTCACTGCCTTCCGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
165580 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
*
165645 TACGATGCCAGGG
131 TACGACGCCAGGG
** * * * * * **
165658 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * * *
165722 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGAGTT-ACTACCTTCAGCTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGA-TTCGCTGCCTTCAGCTT
* * * **
165780 TAATCTGTTCCACTACCACGCAATCG
123 TAA-C----CTACTACGACGCCAGGG
* * * * * * *
165806 AAATAAGATTCACTGCCTTCCGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
165871 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
*
165936 TACGATGCCAGGG
131 TACGACGCCAGGG
** * * * * * **
165949 AAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * * *
166013 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGAGTT-ACTACCTTCAGCTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGA-TTCGCTGCCTTCAGCTT
* * * **
166071 TAATCTGTTCCACTACCACGCAATCG
123 TAA-C----CTACTACGACGCCAGGG
* * * * * * *
166097 AAATAAGATTCACTGCCTTCCGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTGGCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
166162 CAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
*
166227 TACGATGCCAGGG
131 TACGACGCCAGGG
** * * * * * **
166240 AAATAAGATTTACTACATTCAGCTTTAATCAGTTCCACTGCAATGCCAGGGAAA-AGAGATTTGC
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATA-AGATTCAC
** * * ** *
166304 TGCCTTCAGCTTTAATCTG-----CTGTGACGCTC-GGGAAATAAGATTTACTACCTTCAGCTTT
60 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGC-CAAGGAAATGAGATTCGCTGCCTTCAGCTTT
* * * **
166363 AATCTGTTCCACTACAACGCAATCG
124 AA-C----CTACTACGACGCCAGGG
* * * * *
166388 AAATAAGATTCACTGCCTTCAGTTTTAATCTAGTACGACGCCAGGGAAATAAGATTCACTG-CTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* ** * * * *
166452 CAGCTTTAATCTGTTCTACTGCAACGAAAAGGAAATAAGATTCGCGGCCTTCAGGTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
166517 -AGCGACGCCAGGG
131 TA-CGACGCCAGGG
* * * * * * * *
166530 AAATAAAATTCGCTGGCTTCAACTTTAATCTGTTCCACTGCAACGCTGAGGG-AATAAGACTC-G
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGC-CAGGGAAATAAGATTCAC
* * * * *
166593 TGTCCTTCTGATTTAATC---T--ACTGCCACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTT
60 TG-CCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTT
* * **
166653 AATCTACTGCGACGCTAATGCCAAAG
124 AACCTACT---ACG---ACGCCAGGG
* * ** * * * **
166679 AAATGAGATTCGCTGCCTTCAACTTTAATTTACTACAACGGCAGGGAAATAAGATTTGCTGCCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * * * * *
166744 TAGCTTTAATC---T--ACTGCGACTCCAGGGAAATAAGATTCGCTGCCTTCAGATTTAATCTGT
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAA-C---
* * * **
166804 TCCACTGCAACGCCAAAG
127 -CTACTACGACGCCAGGG
* * * * * ** *
166822 AAATAAGATTCGCTTCCTTCTGCTTTAATCTACTTCGACCCCA-GGAAATAAGATTCGTTACCTT
1 AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
* * *
166886 CAACTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGA-T---T-CATTCAGCTTTAATCTAC
66 CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
** *
166946 TGTGACCCCAGGG
131 TACGACGCCAGGG
* * * * *
166959 AAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCACT
1 AAATAAGATTCGCTGCCTTCAGCTTTAA-C----CTACTGCGACGCCAGGGAAATAAGATTCACT
167024 GCCTTCAGCTTTAATCT
61 GCCTTCAGCTTTAATCT
167041 ACTGCGACGC
Statistics
Matches: 2350, Mismatches: 570, Indels: 418
0.70 0.17 0.13
Matches are distributed among these distances:
137 37 0.02
141 1 0.00
142 100 0.04
143 1046 0.45
144 93 0.04
145 6 0.00
146 7 0.00
147 90 0.04
148 930 0.40
149 40 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (143 bp):
AAATAAGATTCGCTGCCTTCAGCTTTAACCTACTGCGACGCCAGGGAAATAAGATTCACTGCCTT
CAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTAACCTAC
TACGACGCCAGGG
Found at i:164523 original size:291 final size:290
Alignment explanation
Indices: 164413--166572 Score: 4056
Period size: 291 Copynumber: 7.4 Consensus size: 290
164403 AGTTCGCTAC
*
164413 CTTCAGTTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
164478 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
164543 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
164608 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
164673 AGTACGACGCCAGGGAAATAAGATTCACTGG
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
164704 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
164769 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
164834 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
164899 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
164964 AGTACGACGCCAGGGAAATAAGATTCACTGG
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
164995 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
165060 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
165125 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
165190 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
165255 AGTACGACGCCAGGGAAATAAGATTCACTGG
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
165286 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
165351 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
165416 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
165481 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
165546 AGTACGACGCCAGGGAAATAAGATTCACTGG
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
165577 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
165642 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
165707 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
165772 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
165837 AGTACGACGCCAGGGAAATAAGATTCACTGG
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
165868 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
165933 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCTGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
165998 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
166063 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
166128 AGTACGACGCCAGGGAAATAAGATTCACTGG
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
166159 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
166224 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCAGTTCCACTGCAATGCCAG
66 TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATC-GTTCCACTGCAATGCCAG
*
166289 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGATTTACTACC
130 GGAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACC
* *
166354 TTCAGCTTTAATCTGTTCCACTACAACGCAATCGAAATAAGATTCACTGCCTTCAGTTTTAATCT
195 TTCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCT
166419 AGTACGACGCCAGGGAAATAAGATTCACT-G
260 AGTACGACGCCAGGGAAATAAGATTCACTGG
* * ** * * *
166449 CTTCAGCTTTAATCTGTTCTACTGCAACGAAAAGGAAATAAGATTCGCGGCCTTCAGGTTTAATC
1 CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
* * ** * *
166514 TAC-AGCGACGCCAGGGAAATAAAATTCGCTGGC-TTCAACTTTAATCTGTTCCACTGCAA
66 TACTA-CGATGCCAGGGAAATAAGATTTACT-ACATTCAGCTTTAATC-GTTCCACTGCAA
166573 CGCTGAGGGA
Statistics
Matches: 1848, Mismatches: 19, Indels: 5
0.99 0.01 0.00
Matches are distributed among these distances:
289 1 0.00
290 107 0.06
291 1740 0.94
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (290 bp):
CTTCAGGTTTAATCTGTTCCACTGCAACGCTAAGGAAATAAGATTCACCGCCTTCAGCTTTAATC
TACTACGATGCCAGGGAAATAAGATTTACTACATTCAGCTTTAATCGTTCCACTGCAATGCCAGG
GAAAAGAGATTTGCTGCCTTCAGCTTTAATCTGCTGTGACGCTCGGGAAATAAGAGTTACTACCT
TCAGCTTTAATCTGTTCCACTACCACGCAATCGAAATAAGATTCACTGCCTTCCGTTTTAATCTA
GTACGACGCCAGGGAAATAAGATTCACTGG
Done.