Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1360

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1923
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:1906 original size:16 final size:16

Alignment explanation


    Indices: 1885--1915  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1875 TTCGACGGGA

                  *         
       1885 GTATACGATTTATCTT
          1 GTATACAATTTATCTT

                           
       1901 GTATACAATTTATCT
          1 GTATACAATTTATCT

       1916 GCCCCCCT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48


Consensus pattern (16 bp):   
GTATACAATTTATCTT
Done.