Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1924

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1205
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38


Found at i:333 original size:21 final size:21

Alignment explanation


    Indices: 304--358  Score: 60
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        294 AATTCTAAAA

                             *   
        304 TTTAA-AATTTTTATAGCTTT
          1 TTTAATAATTTTTATAGATTT

                          *  *    
        324 TTT-ATGAATTTTTTTATATTT
          1 TTTAAT-AATTTTTATAGATTT

                          
        345 TTTAATAATTTTTA
          1 TTTAATAATTTTTA

        359 AAATTTAAAA


Statistics
Matches: 28,  Mismatches: 4, Indels: 5
        0.76            0.11        0.14

Matches are distributed among these distances:
  19    1  0.04
  20    3  0.11
  21   22  0.79
  22    2  0.07

ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65


Consensus pattern (21 bp):   
TTTAATAATTTTTATAGATTT

Found at i:344 original size:10 final size:11

Alignment explanation


    Indices: 311--357  Score: 51
    Period size: 11  Copynumber: 4.3  Consensus size: 11

        301 AAATTTAAAA

                    ** 
        311 TTTTTATAGCT
          1 TTTTTATAATT

                        
        322 TTTTTATGAATT
          1 TTTTTAT-AATT

                       
        334 TTTTTAT-ATT
          1 TTTTTATAATT

                *      
        344 TTTTAATAATT
          1 TTTTTATAATT

               
        355 TTT
          1 TTT

        358 AAAATTTAAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 4
        0.82            0.08        0.11

Matches are distributed among these distances:
  10    9  0.29
  11   13  0.42
  12    9  0.29

ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70


Consensus pattern (11 bp):   
TTTTTATAATT
Done.