Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2516

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 920
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46


Found at i:315 original size:14 final size:15

Alignment explanation


    Indices: 286--317  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

        276 CTTTCATATT

                           
        286 TTATCATGCGCATTA
          1 TTATCATGCGCATTA

                           
        301 TTATCATGC-CATTA
          1 TTATCATGCGCATTA

               
        315 TTA
          1 TTA

        318 CTACAAATTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    8  0.47
  15    9  0.53

ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44


Consensus pattern (15 bp):   
TTATCATGCGCATTA
Done.