Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4674

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 301

Length: 502
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41


Found at i:404 original size:11 final size:11

Alignment explanation


    Indices: 388--431  Score: 51
    Period size: 11  Copynumber: 4.4  Consensus size: 11

        378 TTGACTTTTC

                       
        388 TAATTTGATTA
          1 TAATTTGATTA

                  *    
        399 TAATTTCA-T-
          1 TAATTTGATTA

                       
        408 T-A-TTGATTA
          1 TAATTTGATTA

                       
        417 TAATTTGATTA
          1 TAATTTGATTA

                
        428 TAAT
          1 TAAT

        432 GTTTACTCAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 8
        0.73            0.05        0.22

Matches are distributed among these distances:
   7    3  0.11
   8    2  0.07
   9    2  0.07
  10    2  0.07
  11   18  0.67

ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55


Consensus pattern (11 bp):   
TAATTTGATTA

Found at i:413 original size:18 final size:18

Alignment explanation


    Indices: 392--428  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        382 CTTTTCTAAT

                              
        392 TTGATTATAATTTCATTA
          1 TTGATTATAATTTCATTA

                         *    
        410 TTGATTATAATTTGATTA
          1 TTGATTATAATTTCATTA

             
        428 T
          1 T

        429 AATGTTTACT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57


Consensus pattern (18 bp):   
TTGATTATAATTTCATTA
Done.