Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3661

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 417

Length: 695
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.36


Found at i:652 original size:10 final size:10

Alignment explanation


    Indices: 635--676  Score: 75
    Period size: 10  Copynumber: 4.2  Consensus size: 10

        625 TGCGTGTTAA

                      
        635 ATGAAATTTC
          1 ATGAAATTTC

             *        
        645 ACGAAATTTC
          1 ATGAAATTTC

                      
        655 ATGAAATTTC
          1 ATGAAATTTC

                      
        665 ATGAAATTTC
          1 ATGAAATTTC

              
        675 AT
          1 AT

        677 TATGAAATTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  10   30  1.00

ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38


Consensus pattern (10 bp):   
ATGAAATTTC

Done.