Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3247

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 466

Length: 777
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32


Found at i:101 original size:20 final size:20

Alignment explanation


    Indices: 76--114  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         66 ATATAACCGA

                                 
         76 AAAATAA-AAAATAAAGATAC
          1 AAAATAATAAAA-AAAGATAC

                               
         96 AAAATAATAAAAAAAGATA
          1 AAAATAATAAAAAAAGATA

        115 TTTTCTATTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20   14  0.78
  21    4  0.22

ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15


Consensus pattern (20 bp):   
AAAATAATAAAAAAAGATAC
Done.