Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4096

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 352

Length: 587
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43


Found at i:575 original size:16 final size:15

Alignment explanation


    Indices: 509--580  Score: 58
    Period size: 16  Copynumber: 4.7  Consensus size: 15

        499 CCAGCGGGGT

                            
        509 TCTTTTTCTTTTTCT-
          1 TCTTTTT-TTTTTCTC

                       * * 
        524 TCTTTTTTTTTCCCC
          1 TCTTTTTTTTTTCTC

                         * *
        539 T-TTTTTTGTTTTTTG
          1 TCTTTTTT-TTTTCTC

             *              
        554 TTTTTTTTGTTTTCTC
          1 TCTTTTTT-TTTTCTC

                       
        570 TCTTTTTTTTT
          1 TCTTTTTTTTT

        581 GGATTGA


Statistics
Matches: 45,  Mismatches: 9, Indels: 6
        0.75            0.15        0.10

Matches are distributed among these distances:
  14   11  0.24
  15   15  0.33
  16   19  0.42

ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81


Consensus pattern (15 bp):   
TCTTTTTTTTTTCTC
Done.