Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2258

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31


Found at i:544 original size:22 final size:22

Alignment explanation


    Indices: 500--544  Score: 63
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        490 AGTAAGAAGA

                         **   *   
        500 TTTATTAAATAATTTATTTAAT
          1 TTTATTAAATAATCGATTGAAT

                                  
        522 TTTATTAAATAATCGATTGAAT
          1 TTTATTAAATAATCGATTGAAT

             
        544 T
          1 T

        545 AATAAAATTA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53


Consensus pattern (22 bp):   
TTTATTAAATAATCGATTGAAT
Done.